Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00631

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00630 and CCNA_00631 overlap by 4 nucleotidesCCNA_00631 and CCNA_00632 overlap by 4 nucleotidesCCNA_00632 and CCNA_00633 overlap by 4 nucleotides CCNA_00630: CCNA_00630 - chemotaxis histidine kinase protein cheAII, at 676,286 to 678,580 _00630 CCNA_00631: CCNA_00631 - chemotaxis protein cheW, at 678,577 to 679,029 _00631 CCNA_00632: CCNA_00632 - chemotaxis receiver domain protein CheYII, at 679,026 to 679,394 _00632 CCNA_00633: CCNA_00633 - receiver domain-glutamate methylesterase CheBII, at 679,391 to 680,467 _00633 Position (kb) 678 679 680Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 677.580 kb on + strand, within CCNA_00630at 677.590 kb on + strand, within CCNA_00630at 677.598 kb on - strand, within CCNA_00630at 677.613 kb on + strand, within CCNA_00630at 677.618 kb on + strand, within CCNA_00630at 677.619 kb on + strand, within CCNA_00630at 677.621 kb on - strand, within CCNA_00630at 677.624 kb on + strand, within CCNA_00630at 677.624 kb on + strand, within CCNA_00630at 677.624 kb on + strand, within CCNA_00630at 677.624 kb on + strand, within CCNA_00630at 677.626 kb on - strand, within CCNA_00630at 677.629 kb on + strand, within CCNA_00630at 677.632 kb on - strand, within CCNA_00630at 677.632 kb on - strand, within CCNA_00630at 677.632 kb on - strand, within CCNA_00630at 677.645 kb on + strand, within CCNA_00630at 677.678 kb on + strand, within CCNA_00630at 677.678 kb on + strand, within CCNA_00630at 677.730 kb on - strand, within CCNA_00630at 677.740 kb on + strand, within CCNA_00630at 677.740 kb on + strand, within CCNA_00630at 677.740 kb on + strand, within CCNA_00630at 677.742 kb on - strand, within CCNA_00630at 677.746 kb on + strand, within CCNA_00630at 677.748 kb on - strand, within CCNA_00630at 677.748 kb on - strand, within CCNA_00630at 677.748 kb on - strand, within CCNA_00630at 677.754 kb on - strand, within CCNA_00630at 677.756 kb on + strand, within CCNA_00630at 677.769 kb on + strand, within CCNA_00630at 677.777 kb on - strand, within CCNA_00630at 677.779 kb on + strand, within CCNA_00630at 677.796 kb on - strand, within CCNA_00630at 677.804 kb on - strand, within CCNA_00630at 677.834 kb on - strand, within CCNA_00630at 677.843 kb on - strand, within CCNA_00630at 677.866 kb on - strand, within CCNA_00630at 677.879 kb on + strand, within CCNA_00630at 677.915 kb on - strand, within CCNA_00630at 677.927 kb on + strand, within CCNA_00630at 677.937 kb on + strand, within CCNA_00630at 677.937 kb on + strand, within CCNA_00630at 677.945 kb on - strand, within CCNA_00630at 677.960 kb on + strand, within CCNA_00630at 677.965 kb on + strand, within CCNA_00630at 677.968 kb on - strand, within CCNA_00630at 677.968 kb on - strand, within CCNA_00630at 677.968 kb on - strand, within CCNA_00630at 677.972 kb on + strand, within CCNA_00630at 678.000 kb on + strand, within CCNA_00630at 678.011 kb on - strand, within CCNA_00630at 678.018 kb on - strand, within CCNA_00630at 678.113 kb on + strand, within CCNA_00630at 678.142 kb on + strand, within CCNA_00630at 678.163 kb on + strand, within CCNA_00630at 678.181 kb on - strand, within CCNA_00630at 678.220 kb on + strand, within CCNA_00630at 678.243 kb on + strand, within CCNA_00630at 678.244 kb on - strand, within CCNA_00630at 678.315 kb on - strand, within CCNA_00630at 678.316 kb on - strand, within CCNA_00630at 678.325 kb on - strand, within CCNA_00630at 678.349 kb on - strand, within CCNA_00630at 678.361 kb on + strandat 678.361 kb on + strandat 678.369 kb on - strandat 678.369 kb on - strandat 678.399 kb on - strandat 678.403 kb on + strandat 678.411 kb on - strandat 678.415 kb on + strandat 678.423 kb on - strandat 678.448 kb on + strandat 678.448 kb on + strandat 678.469 kb on - strandat 678.469 kb on - strandat 678.495 kb on + strandat 678.521 kb on - strandat 678.532 kb on + strandat 678.532 kb on + strandat 678.532 kb on + strandat 678.540 kb on - strandat 678.567 kb on + strandat 678.588 kb on + strandat 678.588 kb on + strandat 678.593 kb on + strandat 678.593 kb on + strandat 678.596 kb on - strandat 678.596 kb on - strandat 678.626 kb on + strand, within CCNA_00631at 678.627 kb on - strand, within CCNA_00631at 678.627 kb on - strand, within CCNA_00631at 678.635 kb on + strand, within CCNA_00631at 678.661 kb on - strand, within CCNA_00631at 678.661 kb on - strand, within CCNA_00631at 678.662 kb on - strand, within CCNA_00631at 678.668 kb on + strand, within CCNA_00631at 678.672 kb on - strand, within CCNA_00631at 678.674 kb on + strand, within CCNA_00631at 678.749 kb on - strand, within CCNA_00631at 678.764 kb on + strand, within CCNA_00631at 678.772 kb on - strand, within CCNA_00631at 678.772 kb on - strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.812 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.869 kb on + strand, within CCNA_00631at 678.869 kb on + strand, within CCNA_00631at 678.884 kb on + strand, within CCNA_00631at 678.887 kb on - strand, within CCNA_00631at 678.922 kb on + strand, within CCNA_00631at 678.974 kb on - strand, within CCNA_00631at 678.980 kb on + strand, within CCNA_00631at 679.011 kb on + strandat 679.030 kb on + strandat 679.038 kb on - strandat 679.038 kb on - strandat 679.038 kb on - strandat 679.044 kb on + strandat 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on - strand, within CCNA_00632at 679.087 kb on - strand, within CCNA_00632at 679.098 kb on + strand, within CCNA_00632at 679.126 kb on + strand, within CCNA_00632at 679.126 kb on + strand, within CCNA_00632at 679.146 kb on + strand, within CCNA_00632at 679.149 kb on - strand, within CCNA_00632at 679.154 kb on - strand, within CCNA_00632at 679.181 kb on - strand, within CCNA_00632at 679.203 kb on + strand, within CCNA_00632at 679.211 kb on - strand, within CCNA_00632at 679.250 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.262 kb on + strand, within CCNA_00632at 679.272 kb on + strand, within CCNA_00632at 679.291 kb on + strand, within CCNA_00632at 679.299 kb on - strand, within CCNA_00632at 679.376 kb on + strandat 679.422 kb on - strandat 679.437 kb on - strandat 679.437 kb on - strandat 679.446 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.487 kb on - strandat 679.487 kb on - strandat 679.487 kb on - strandat 679.501 kb on - strand, within CCNA_00633at 679.537 kb on + strand, within CCNA_00633at 679.550 kb on - strand, within CCNA_00633at 679.554 kb on - strand, within CCNA_00633at 679.569 kb on + strand, within CCNA_00633at 679.579 kb on - strand, within CCNA_00633at 679.615 kb on + strand, within CCNA_00633at 679.615 kb on + strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.657 kb on + strand, within CCNA_00633at 679.667 kb on - strand, within CCNA_00633at 679.677 kb on - strand, within CCNA_00633at 679.681 kb on + strand, within CCNA_00633at 679.743 kb on - strand, within CCNA_00633at 679.758 kb on + strand, within CCNA_00633at 679.758 kb on + strand, within CCNA_00633at 679.758 kb on - strand, within CCNA_00633at 679.763 kb on + strand, within CCNA_00633at 679.766 kb on - strand, within CCNA_00633at 679.776 kb on - strand, within CCNA_00633at 679.781 kb on - strand, within CCNA_00633at 679.783 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.839 kb on - strand, within CCNA_00633at 679.839 kb on - strand, within CCNA_00633at 679.854 kb on + strand, within CCNA_00633at 679.858 kb on + strand, within CCNA_00633at 679.878 kb on + strand, within CCNA_00633at 679.888 kb on + strand, within CCNA_00633at 679.896 kb on - strandat 679.896 kb on - strand, within CCNA_00633at 679.909 kb on - strand, within CCNA_00633at 679.920 kb on - strand, within CCNA_00633at 679.923 kb on + strand, within CCNA_00633at 679.972 kb on - strand, within CCNA_00633at 679.982 kb on - strand, within CCNA_00633at 679.982 kb on - strand, within CCNA_00633at 679.988 kb on + strand, within CCNA_00633at 679.996 kb on - strand, within CCNA_00633at 680.007 kb on + strand, within CCNA_00633at 680.019 kb on + strand, within CCNA_00633at 680.023 kb on + strand, within CCNA_00633

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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677,580 + CCNA_00630 0.56 -0.4
677,590 + CCNA_00630 0.57 +0.9
677,598 - CCNA_00630 0.57 -0.1
677,613 + CCNA_00630 0.58 +2.2
677,618 + CCNA_00630 0.58 -1.1
677,619 + CCNA_00630 0.58 +0.7
677,621 - CCNA_00630 0.58 -0.9
677,624 + CCNA_00630 0.58 -2.0
677,624 + CCNA_00630 0.58 -1.5
677,624 + CCNA_00630 0.58 -0.2
677,624 + CCNA_00630 0.58 -0.9
677,626 - CCNA_00630 0.58 -1.9
677,629 + CCNA_00630 0.59 -1.2
677,632 - CCNA_00630 0.59 +3.9
677,632 - CCNA_00630 0.59 -0.4
677,632 - CCNA_00630 0.59 -0.5
677,645 + CCNA_00630 0.59 +0.5
677,678 + CCNA_00630 0.61 -0.9
677,678 + CCNA_00630 0.61 +0.5
677,730 - CCNA_00630 0.63 -0.6
677,740 + CCNA_00630 0.63 +0.7
677,740 + CCNA_00630 0.63 -0.1
677,740 + CCNA_00630 0.63 -1.9
677,742 - CCNA_00630 0.63 -0.5
677,746 + CCNA_00630 0.64 -1.5
677,748 - CCNA_00630 0.64 +1.2
677,748 - CCNA_00630 0.64 +0.4
677,748 - CCNA_00630 0.64 -1.0
677,754 - CCNA_00630 0.64 -1.8
677,756 + CCNA_00630 0.64 -1.0
677,769 + CCNA_00630 0.65 +0.1
677,777 - CCNA_00630 0.65 +1.4
677,779 + CCNA_00630 0.65 -0.3
677,796 - CCNA_00630 0.66 +1.5
677,804 - CCNA_00630 0.66 -0.5
677,834 - CCNA_00630 0.67 -0.5
677,843 - CCNA_00630 0.68 -1.4
677,866 - CCNA_00630 0.69 +3.3
677,879 + CCNA_00630 0.69 -0.7
677,915 - CCNA_00630 0.71 +0.2
677,927 + CCNA_00630 0.72 -0.3
677,937 + CCNA_00630 0.72 +1.2
677,937 + CCNA_00630 0.72 -1.2
677,945 - CCNA_00630 0.72 -1.6
677,960 + CCNA_00630 0.73 -0.3
677,965 + CCNA_00630 0.73 -1.2
677,968 - CCNA_00630 0.73 -1.1
677,968 - CCNA_00630 0.73 +0.2
677,968 - CCNA_00630 0.73 -0.7
677,972 + CCNA_00630 0.73 -2.1
678,000 + CCNA_00630 0.75 -0.5
678,011 - CCNA_00630 0.75 -0.8
678,018 - CCNA_00630 0.75 -1.3
678,113 + CCNA_00630 0.80 -0.4
678,142 + CCNA_00630 0.81 +4.1
678,163 + CCNA_00630 0.82 -0.6
678,181 - CCNA_00630 0.83 +1.3
678,220 + CCNA_00630 0.84 +0.3
678,243 + CCNA_00630 0.85 -0.3
678,244 - CCNA_00630 0.85 +0.2
678,315 - CCNA_00630 0.88 -1.3
678,316 - CCNA_00630 0.88 -2.4
678,325 - CCNA_00630 0.89 -0.7
678,349 - CCNA_00630 0.90 -0.7
678,361 + -0.6
678,361 + +0.6
678,369 - -1.3
678,369 - +0.5
678,399 - +1.1
678,403 + +0.1
678,411 - -1.3
678,415 + -0.7
678,423 - -1.1
678,448 + -1.7
678,448 + +0.9
678,469 - +1.1
678,469 - -0.5
678,495 + +0.2
678,521 - +0.1
678,532 + +1.0
678,532 + -1.2
678,532 + -0.5
678,540 - +0.8
678,567 + -0.5
678,588 + +0.4
678,588 + -0.9
678,593 + -0.7
678,593 + -1.6
678,596 - +2.1
678,596 - +0.1
678,626 + CCNA_00631 0.11 -0.9
678,627 - CCNA_00631 0.11 -2.0
678,627 - CCNA_00631 0.11 -1.5
678,635 + CCNA_00631 0.13 -0.6
678,661 - CCNA_00631 0.19 +0.9
678,661 - CCNA_00631 0.19 +0.5
678,662 - CCNA_00631 0.19 -1.2
678,668 + CCNA_00631 0.20 -1.3
678,672 - CCNA_00631 0.21 -2.0
678,674 + CCNA_00631 0.21 +0.8
678,749 - CCNA_00631 0.38 -0.4
678,764 + CCNA_00631 0.41 -0.2
678,772 - CCNA_00631 0.43 -0.5
678,772 - CCNA_00631 0.43 -0.9
678,809 + CCNA_00631 0.51 +0.8
678,809 + CCNA_00631 0.51 -0.2
678,809 + CCNA_00631 0.51 -1.3
678,809 + CCNA_00631 0.51 +1.5
678,809 + CCNA_00631 0.51 -0.8
678,812 - CCNA_00631 0.52 -0.4
678,817 - CCNA_00631 0.53 -0.3
678,817 - CCNA_00631 0.53 +1.2
678,817 - CCNA_00631 0.53 -0.4
678,817 - CCNA_00631 0.53 -1.4
678,817 - CCNA_00631 0.53 -0.3
678,869 + CCNA_00631 0.64 -0.9
678,869 + CCNA_00631 0.64 -0.6
678,884 + CCNA_00631 0.68 -0.9
678,887 - CCNA_00631 0.68 -0.5
678,922 + CCNA_00631 0.76 -0.3
678,974 - CCNA_00631 0.88 +0.6
678,980 + CCNA_00631 0.89 -0.1
679,011 + -1.0
679,030 + -0.7
679,038 - -1.1
679,038 - +1.1
679,038 - -1.7
679,044 + -0.3
679,079 + CCNA_00632 0.14 -0.9
679,079 + CCNA_00632 0.14 -0.1
679,079 + CCNA_00632 0.14 +0.7
679,079 + CCNA_00632 0.14 -0.1
679,079 - CCNA_00632 0.14 +0.9
679,087 - CCNA_00632 0.17 +1.8
679,098 + CCNA_00632 0.20 -1.5
679,126 + CCNA_00632 0.27 -0.1
679,126 + CCNA_00632 0.27 +0.6
679,146 + CCNA_00632 0.33 +1.1
679,149 - CCNA_00632 0.33 +0.4
679,154 - CCNA_00632 0.35 -0.2
679,181 - CCNA_00632 0.42 -0.7
679,203 + CCNA_00632 0.48 -1.1
679,211 - CCNA_00632 0.50 +1.1
679,250 + CCNA_00632 0.61 +1.7
679,257 + CCNA_00632 0.63 +1.4
679,257 + CCNA_00632 0.63 -0.6
679,257 + CCNA_00632 0.63 +0.9
679,257 + CCNA_00632 0.63 -1.2
679,262 + CCNA_00632 0.64 -0.6
679,272 + CCNA_00632 0.67 -0.6
679,291 + CCNA_00632 0.72 -0.8
679,299 - CCNA_00632 0.74 -0.1
679,376 + -0.7
679,422 - -1.1
679,437 - -2.6
679,437 - +0.8
679,446 + -1.0
679,479 + +0.6
679,479 + -0.9
679,479 + -0.1
679,479 + -1.5
679,487 - -1.1
679,487 - -1.1
679,487 - +0.5
679,501 - CCNA_00633 0.10 -0.4
679,537 + CCNA_00633 0.14 -0.6
679,550 - CCNA_00633 0.15 -1.9
679,554 - CCNA_00633 0.15 +2.0
679,569 + CCNA_00633 0.17 -1.6
679,579 - CCNA_00633 0.17 -0.9
679,615 + CCNA_00633 0.21 -0.6
679,615 + CCNA_00633 0.21 -1.0
679,623 - CCNA_00633 0.22 +0.2
679,623 - CCNA_00633 0.22 -0.1
679,623 - CCNA_00633 0.22 -0.5
679,623 - CCNA_00633 0.22 -0.8
679,657 + CCNA_00633 0.25 -1.3
679,667 - CCNA_00633 0.26 -0.8
679,677 - CCNA_00633 0.27 +0.5
679,681 + CCNA_00633 0.27 +0.1
679,743 - CCNA_00633 0.33 -0.8
679,758 + CCNA_00633 0.34 -0.3
679,758 + CCNA_00633 0.34 -2.5
679,758 - CCNA_00633 0.34 -0.8
679,763 + CCNA_00633 0.35 -1.1
679,766 - CCNA_00633 0.35 -0.2
679,776 - CCNA_00633 0.36 +1.1
679,781 - CCNA_00633 0.36 -0.7
679,783 + CCNA_00633 0.36 -1.3
679,831 + CCNA_00633 0.41 -0.7
679,831 + CCNA_00633 0.41 -0.7
679,831 + CCNA_00633 0.41 +3.0
679,831 + CCNA_00633 0.41 -1.7
679,831 + CCNA_00633 0.41 -0.6
679,831 + CCNA_00633 0.41 -1.4
679,839 - CCNA_00633 0.42 +1.2
679,839 - CCNA_00633 0.42 +1.7
679,854 + CCNA_00633 0.43 +0.5
679,858 + CCNA_00633 0.43 -0.3
679,878 + CCNA_00633 0.45 -1.6
679,888 + CCNA_00633 0.46 -0.4
679,896 - +2.7
679,896 - CCNA_00633 0.47 -2.3
679,909 - CCNA_00633 0.48 +1.2
679,920 - CCNA_00633 0.49 -2.1
679,923 + CCNA_00633 0.49 -1.2
679,972 - CCNA_00633 0.54 -0.0
679,982 - CCNA_00633 0.55 -0.6
679,982 - CCNA_00633 0.55 +0.9
679,988 + CCNA_00633 0.55 +0.7
679,996 - CCNA_00633 0.56 -0.0
680,007 + CCNA_00633 0.57 -0.2
680,019 + CCNA_00633 0.58 -0.7
680,023 + CCNA_00633 0.59 +2.9

Or see this region's nucleotide sequence