Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00050

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00048 and CCNA_00049 are separated by 119 nucleotidesCCNA_00049 and CCNA_00050 are separated by 27 nucleotidesCCNA_00050 and CCNA_00051 overlap by 4 nucleotidesCCNA_00051 and CCNA_00052 are separated by 8 nucleotides CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125 _00048 CCNA_00049: CCNA_00049 - HTH transcriptional regulator, at 52,245 to 52,679 _00049 CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.259 kb on - strandat 52.287 kb on - strandat 52.296 kb on + strand, within CCNA_00049at 52.323 kb on - strand, within CCNA_00049at 52.332 kb on - strand, within CCNA_00049at 52.339 kb on - strand, within CCNA_00049at 52.339 kb on - strand, within CCNA_00049at 52.350 kb on - strand, within CCNA_00049at 52.352 kb on + strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.369 kb on - strand, within CCNA_00049at 52.388 kb on - strand, within CCNA_00049at 52.403 kb on + strand, within CCNA_00049at 52.428 kb on - strand, within CCNA_00049at 52.438 kb on - strand, within CCNA_00049at 52.496 kb on - strand, within CCNA_00049at 52.535 kb on - strand, within CCNA_00049at 52.821 kb on + strandat 52.904 kb on + strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.958 kb on + strand, within CCNA_00050at 52.963 kb on + strand, within CCNA_00050at 52.966 kb on - strand, within CCNA_00050at 52.972 kb on - strand, within CCNA_00050at 52.989 kb on - strand, within CCNA_00050at 53.023 kb on - strand, within CCNA_00050at 53.052 kb on + strand, within CCNA_00050at 53.088 kb on - strand, within CCNA_00050at 53.170 kb on - strand, within CCNA_00050at 53.204 kb on - strand, within CCNA_00050at 53.213 kb on - strand, within CCNA_00050at 53.238 kb on + strand, within CCNA_00050at 53.243 kb on + strand, within CCNA_00050at 53.288 kb on - strand, within CCNA_00050at 53.339 kb on - strand, within CCNA_00050at 53.353 kb on - strand, within CCNA_00050at 53.357 kb on - strand, within CCNA_00050at 53.374 kb on + strand, within CCNA_00050at 53.382 kb on - strand, within CCNA_00050at 53.419 kb on - strand, within CCNA_00050at 53.485 kb on - strand, within CCNA_00050at 53.495 kb on - strand, within CCNA_00050at 53.505 kb on - strand, within CCNA_00050at 53.511 kb on + strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.596 kb on - strand, within CCNA_00050at 53.600 kb on + strand, within CCNA_00050at 53.635 kb on + strand, within CCNA_00050at 53.637 kb on - strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.675 kb on - strand, within CCNA_00050at 53.757 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.777 kb on + strand, within CCNA_00050at 53.780 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.785 kb on - strand, within CCNA_00050at 53.793 kb on - strand, within CCNA_00050at 53.821 kb on - strand, within CCNA_00050at 53.867 kb on + strand, within CCNA_00050at 53.875 kb on - strand, within CCNA_00050at 53.913 kb on + strand, within CCNA_00050at 53.913 kb on + strand, within CCNA_00050at 53.921 kb on - strand, within CCNA_00050at 53.945 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.950 kb on + strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.958 kb on - strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.971 kb on + strand, within CCNA_00050at 53.972 kb on - strand, within CCNA_00050at 53.976 kb on + strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.979 kb on - strand, within CCNA_00050at 53.984 kb on - strand, within CCNA_00050at 53.984 kb on - strand, within CCNA_00050at 54.054 kb on + strand, within CCNA_00050at 54.136 kb on + strand, within CCNA_00050at 54.183 kb on - strandat 54.251 kb on + strandat 54.251 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.262 kb on + strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.270 kb on - strandat 54.381 kb on + strandat 54.459 kb on + strand, within CCNA_00051at 54.459 kb on + strand, within CCNA_00051at 54.470 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.494 kb on + strand, within CCNA_00051at 54.500 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.502 kb on - strand, within CCNA_00051at 54.506 kb on - strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.520 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.526 kb on + strand, within CCNA_00051at 54.528 kb on - strand, within CCNA_00051at 54.533 kb on + strand, within CCNA_00051at 54.538 kb on + strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.551 kb on - strand, within CCNA_00051at 54.560 kb on - strand, within CCNA_00051at 54.561 kb on - strand, within CCNA_00051at 54.599 kb on + strand, within CCNA_00051at 54.636 kb on + strand, within CCNA_00051at 54.647 kb on + strand, within CCNA_00051at 54.687 kb on - strand, within CCNA_00051at 54.713 kb on + strand, within CCNA_00051at 54.721 kb on - strand, within CCNA_00051at 54.751 kb on + strand, within CCNA_00051at 54.770 kb on + strand, within CCNA_00051at 54.778 kb on - strand, within CCNA_00051at 54.792 kb on - strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.804 kb on + strand, within CCNA_00051at 54.822 kb on - strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 55.015 kb on - strand, within CCNA_00051at 55.035 kb on - strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.045 kb on - strand, within CCNA_00051at 55.133 kb on + strandat 55.152 kb on + strandat 55.152 kb on + strandat 55.204 kb on - strandat 55.206 kb on - strandat 55.220 kb on - strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.227 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.234 kb on + strandat 55.253 kb on + strandat 55.260 kb on - strandat 55.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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52,259 - +0.3
52,287 - +0.7
52,296 + CCNA_00049 0.12 +0.1
52,323 - CCNA_00049 0.18 -0.1
52,332 - CCNA_00049 0.20 +0.7
52,339 - CCNA_00049 0.22 +0.1
52,339 - CCNA_00049 0.22 -0.2
52,350 - CCNA_00049 0.24 -0.5
52,352 + CCNA_00049 0.25 -1.1
52,360 - CCNA_00049 0.26 -1.0
52,360 - CCNA_00049 0.26 +3.1
52,360 - CCNA_00049 0.26 -0.1
52,369 - CCNA_00049 0.29 -1.1
52,388 - CCNA_00049 0.33 -0.3
52,403 + CCNA_00049 0.36 -0.3
52,428 - CCNA_00049 0.42 +0.9
52,438 - CCNA_00049 0.44 -0.9
52,496 - CCNA_00049 0.58 -1.8
52,535 - CCNA_00049 0.67 +0.1
52,821 + -0.5
52,904 + CCNA_00050 0.12 -1.1
52,912 - CCNA_00050 0.13 +0.9
52,912 - CCNA_00050 0.13 +0.8
52,912 - CCNA_00050 0.13 -0.1
52,958 + CCNA_00050 0.16 +0.3
52,963 + CCNA_00050 0.16 -1.7
52,966 - CCNA_00050 0.16 -1.3
52,972 - CCNA_00050 0.17 -0.6
52,989 - CCNA_00050 0.18 -1.7
53,023 - CCNA_00050 0.20 -0.8
53,052 + CCNA_00050 0.22 -2.3
53,088 - CCNA_00050 0.24 +0.1
53,170 - CCNA_00050 0.29 -1.7
53,204 - CCNA_00050 0.31 -0.0
53,213 - CCNA_00050 0.32 -0.8
53,238 + CCNA_00050 0.33 +1.2
53,243 + CCNA_00050 0.34 -1.1
53,288 - CCNA_00050 0.36 -1.2
53,339 - CCNA_00050 0.40 -0.1
53,353 - CCNA_00050 0.41 -0.3
53,357 - CCNA_00050 0.41 -2.3
53,374 + CCNA_00050 0.42 -1.1
53,382 - CCNA_00050 0.42 -0.2
53,419 - CCNA_00050 0.45 -1.1
53,485 - CCNA_00050 0.49 +0.1
53,495 - CCNA_00050 0.49 -1.8
53,505 - CCNA_00050 0.50 -0.5
53,511 + CCNA_00050 0.50 -0.2
53,549 - CCNA_00050 0.53 -0.2
53,549 - CCNA_00050 0.53 -1.6
53,596 - CCNA_00050 0.56 -0.1
53,600 + CCNA_00050 0.56 -1.8
53,635 + CCNA_00050 0.58 -0.2
53,637 - CCNA_00050 0.58 -0.3
53,641 + CCNA_00050 0.59 -1.5
53,641 + CCNA_00050 0.59 +0.5
53,649 - CCNA_00050 0.59 -0.2
53,649 - CCNA_00050 0.59 -0.2
53,675 - CCNA_00050 0.61 +2.3
53,757 + CCNA_00050 0.66 +1.2
53,777 + CCNA_00050 0.67 +0.5
53,777 + CCNA_00050 0.67 -1.2
53,777 + CCNA_00050 0.67 -2.3
53,777 + CCNA_00050 0.67 -1.0
53,780 - CCNA_00050 0.67 -1.3
53,785 - CCNA_00050 0.68 -0.3
53,785 - CCNA_00050 0.68 -1.2
53,785 - CCNA_00050 0.68 -2.2
53,785 - CCNA_00050 0.68 -1.1
53,793 - CCNA_00050 0.68 -0.5
53,821 - CCNA_00050 0.70 -0.9
53,867 + CCNA_00050 0.73 -0.2
53,875 - CCNA_00050 0.73 +0.2
53,913 + CCNA_00050 0.76 +0.7
53,913 + CCNA_00050 0.76 -0.2
53,921 - CCNA_00050 0.76 -0.0
53,945 + CCNA_00050 0.78 +0.9
53,950 + CCNA_00050 0.78 +0.8
53,950 + CCNA_00050 0.78 -0.5
53,950 + CCNA_00050 0.78 +0.2
53,950 + CCNA_00050 0.78 +0.1
53,958 - CCNA_00050 0.79 +1.5
53,958 - CCNA_00050 0.79 -0.7
53,958 - CCNA_00050 0.79 -1.5
53,971 + CCNA_00050 0.79 -1.7
53,971 + CCNA_00050 0.79 -2.3
53,971 + CCNA_00050 0.79 +1.5
53,971 + CCNA_00050 0.79 -1.9
53,971 + CCNA_00050 0.79 -1.9
53,971 + CCNA_00050 0.79 -1.7
53,972 - CCNA_00050 0.79 -1.1
53,976 + CCNA_00050 0.80 +0.8
53,979 - CCNA_00050 0.80 -0.1
53,979 - CCNA_00050 0.80 +1.1
53,979 - CCNA_00050 0.80 +0.3
53,979 - CCNA_00050 0.80 -2.1
53,979 - CCNA_00050 0.80 -0.2
53,979 - CCNA_00050 0.80 -0.4
53,984 - CCNA_00050 0.80 +0.1
53,984 - CCNA_00050 0.80 -0.3
54,054 + CCNA_00050 0.85 -1.3
54,136 + CCNA_00050 0.90 +0.1
54,183 - -1.4
54,251 + -0.9
54,251 + +0.5
54,262 + -0.1
54,262 + +0.9
54,262 + -0.5
54,270 - -1.1
54,270 - -0.2
54,270 - -0.2
54,270 - +0.3
54,270 - -0.2
54,270 - -1.8
54,381 + -1.9
54,459 + CCNA_00051 0.18 +1.2
54,459 + CCNA_00051 0.18 +0.1
54,470 + CCNA_00051 0.19 +0.7
54,494 + CCNA_00051 0.21 -0.1
54,494 + CCNA_00051 0.21 -1.9
54,500 - CCNA_00051 0.22 +1.7
54,502 - CCNA_00051 0.22 -0.7
54,502 - CCNA_00051 0.22 +0.1
54,506 - CCNA_00051 0.23 -0.4
54,520 + CCNA_00051 0.24 -1.4
54,520 + CCNA_00051 0.24 -2.0
54,526 + CCNA_00051 0.25 +0.2
54,526 + CCNA_00051 0.25 +1.2
54,528 - CCNA_00051 0.25 +1.5
54,533 + CCNA_00051 0.26 -0.8
54,538 + CCNA_00051 0.26 -2.2
54,551 - CCNA_00051 0.28 -1.2
54,551 - CCNA_00051 0.28 -1.5
54,560 - CCNA_00051 0.28 -1.2
54,561 - CCNA_00051 0.29 +0.7
54,599 + CCNA_00051 0.33 -0.4
54,636 + CCNA_00051 0.37 +0.4
54,647 + CCNA_00051 0.38 -1.3
54,687 - CCNA_00051 0.42 -0.2
54,713 + CCNA_00051 0.45 +0.1
54,721 - CCNA_00051 0.46 -1.8
54,751 + CCNA_00051 0.49 -0.5
54,770 + CCNA_00051 0.51 -0.7
54,778 - CCNA_00051 0.52 +0.9
54,792 - CCNA_00051 0.54 +0.3
54,793 - CCNA_00051 0.54 +0.6
54,804 + CCNA_00051 0.55 +0.9
54,822 - CCNA_00051 0.57 -0.6
54,829 + CCNA_00051 0.57 -2.1
54,829 + CCNA_00051 0.57 -0.1
54,870 + CCNA_00051 0.62 +0.6
54,878 - CCNA_00051 0.63 -1.0
55,015 - CCNA_00051 0.78 -0.9
55,035 - CCNA_00051 0.80 +0.2
55,044 + CCNA_00051 0.81 +0.5
55,044 + CCNA_00051 0.81 -0.7
55,045 - CCNA_00051 0.81 +0.3
55,133 + -0.9
55,152 + -0.2
55,152 + +0.6
55,204 - -0.8
55,206 - +1.2
55,220 - +0.7
55,224 + +0.9
55,224 + -1.3
55,224 + -0.3
55,224 + -1.0
55,227 - -1.3
55,232 - -0.7
55,232 - +0.2
55,232 - -0.4
55,232 - +1.4
55,232 - +0.1
55,232 - -1.4
55,232 - +0.3
55,232 - -0.6
55,232 - -0.2
55,232 - -0.4
55,232 - +0.4
55,234 + -1.4
55,253 + -1.0
55,260 - -0.4
55,270 + -2.2

Or see this region's nucleotide sequence