Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24195

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS24190 and CA265_RS24195 are separated by 78 nucleotidesCA265_RS24195 and CA265_RS24200 are separated by 167 nucleotidesCA265_RS24200 and CA265_RS24205 are separated by 52 nucleotides CA265_RS24190: CA265_RS24190 - transporter, at 5,893,987 to 5,895,327 _RS24190 CA265_RS24195: CA265_RS24195 - TetR family transcriptional regulator, at 5,895,406 to 5,896,017 _RS24195 CA265_RS24200: CA265_RS24200 - fatty acid hydroxylase, at 5,896,185 to 5,896,628 _RS24200 CA265_RS24205: CA265_RS24205 - hypothetical protein, at 5,896,681 to 5,897,370 _RS24205 Position (kb) 5895 5896 5897Strain fitness (log2 ratio) -2 -1 0 1 2at 5894.447 kb on + strand, within CA265_RS24190at 5894.448 kb on - strand, within CA265_RS24190at 5894.492 kb on - strand, within CA265_RS24190at 5894.496 kb on - strand, within CA265_RS24190at 5894.580 kb on + strand, within CA265_RS24190at 5894.584 kb on + strand, within CA265_RS24190at 5894.585 kb on - strand, within CA265_RS24190at 5894.595 kb on + strand, within CA265_RS24190at 5894.595 kb on + strand, within CA265_RS24190at 5894.729 kb on - strand, within CA265_RS24190at 5894.739 kb on + strand, within CA265_RS24190at 5894.768 kb on - strand, within CA265_RS24190at 5894.812 kb on - strand, within CA265_RS24190at 5894.829 kb on + strand, within CA265_RS24190at 5894.874 kb on - strand, within CA265_RS24190at 5894.874 kb on - strand, within CA265_RS24190at 5894.874 kb on - strand, within CA265_RS24190at 5894.922 kb on + strand, within CA265_RS24190at 5894.930 kb on + strand, within CA265_RS24190at 5894.930 kb on + strand, within CA265_RS24190at 5895.085 kb on - strand, within CA265_RS24190at 5895.095 kb on + strand, within CA265_RS24190at 5895.096 kb on - strand, within CA265_RS24190at 5895.096 kb on - strand, within CA265_RS24190at 5895.142 kb on + strand, within CA265_RS24190at 5895.143 kb on - strand, within CA265_RS24190at 5895.219 kb on - strandat 5895.240 kb on + strandat 5895.291 kb on + strandat 5895.292 kb on + strandat 5895.332 kb on + strandat 5895.332 kb on + strandat 5895.356 kb on + strandat 5895.356 kb on + strandat 5895.356 kb on + strandat 5895.357 kb on - strandat 5895.360 kb on + strandat 5895.361 kb on - strandat 5895.437 kb on - strandat 5895.471 kb on + strand, within CA265_RS24195at 5895.472 kb on - strand, within CA265_RS24195at 5895.517 kb on - strand, within CA265_RS24195at 5895.520 kb on - strand, within CA265_RS24195at 5895.661 kb on + strand, within CA265_RS24195at 5895.662 kb on - strand, within CA265_RS24195at 5895.662 kb on - strand, within CA265_RS24195at 5895.700 kb on + strand, within CA265_RS24195at 5895.726 kb on - strand, within CA265_RS24195at 5895.728 kb on + strand, within CA265_RS24195at 5895.800 kb on + strand, within CA265_RS24195at 5895.856 kb on - strand, within CA265_RS24195at 5895.860 kb on - strand, within CA265_RS24195at 5895.881 kb on + strand, within CA265_RS24195at 5895.923 kb on - strand, within CA265_RS24195at 5895.943 kb on - strand, within CA265_RS24195at 5895.972 kb on + strandat 5896.152 kb on + strandat 5896.152 kb on + strandat 5896.155 kb on - strandat 5896.157 kb on - strandat 5896.253 kb on + strand, within CA265_RS24200at 5896.289 kb on + strand, within CA265_RS24200at 5896.383 kb on + strand, within CA265_RS24200at 5896.388 kb on - strand, within CA265_RS24200at 5896.439 kb on - strand, within CA265_RS24200at 5896.506 kb on - strand, within CA265_RS24200at 5896.541 kb on + strand, within CA265_RS24200at 5896.694 kb on + strandat 5896.773 kb on + strand, within CA265_RS24205at 5896.774 kb on - strand, within CA265_RS24205at 5896.789 kb on + strand, within CA265_RS24205at 5896.789 kb on + strand, within CA265_RS24205at 5896.795 kb on + strand, within CA265_RS24205at 5896.842 kb on - strand, within CA265_RS24205at 5896.846 kb on - strand, within CA265_RS24205at 5896.919 kb on - strand, within CA265_RS24205at 5896.919 kb on - strand, within CA265_RS24205at 5896.950 kb on + strand, within CA265_RS24205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
remove
5,894,447 + CA265_RS24190 0.34 +0.2
5,894,448 - CA265_RS24190 0.34 -0.1
5,894,492 - CA265_RS24190 0.38 +0.7
5,894,496 - CA265_RS24190 0.38 +0.9
5,894,580 + CA265_RS24190 0.44 +0.6
5,894,584 + CA265_RS24190 0.45 -0.6
5,894,585 - CA265_RS24190 0.45 -1.4
5,894,595 + CA265_RS24190 0.45 -0.9
5,894,595 + CA265_RS24190 0.45 -0.4
5,894,729 - CA265_RS24190 0.55 +1.0
5,894,739 + CA265_RS24190 0.56 +0.3
5,894,768 - CA265_RS24190 0.58 -0.0
5,894,812 - CA265_RS24190 0.62 -1.0
5,894,829 + CA265_RS24190 0.63 -0.2
5,894,874 - CA265_RS24190 0.66 +0.0
5,894,874 - CA265_RS24190 0.66 -0.9
5,894,874 - CA265_RS24190 0.66 -1.4
5,894,922 + CA265_RS24190 0.70 +0.4
5,894,930 + CA265_RS24190 0.70 +1.0
5,894,930 + CA265_RS24190 0.70 -2.0
5,895,085 - CA265_RS24190 0.82 -1.0
5,895,095 + CA265_RS24190 0.83 +0.0
5,895,096 - CA265_RS24190 0.83 -1.1
5,895,096 - CA265_RS24190 0.83 -0.6
5,895,142 + CA265_RS24190 0.86 -0.7
5,895,143 - CA265_RS24190 0.86 +1.4
5,895,219 - -0.3
5,895,240 + +0.3
5,895,291 + -0.1
5,895,292 + -0.1
5,895,332 + -0.2
5,895,332 + -1.5
5,895,356 + +0.1
5,895,356 + +2.2
5,895,356 + -0.2
5,895,357 - -1.5
5,895,360 + +0.4
5,895,361 - -0.4
5,895,437 - -0.7
5,895,471 + CA265_RS24195 0.11 -0.0
5,895,472 - CA265_RS24195 0.11 -0.1
5,895,517 - CA265_RS24195 0.18 +0.2
5,895,520 - CA265_RS24195 0.19 +0.5
5,895,661 + CA265_RS24195 0.42 +0.1
5,895,662 - CA265_RS24195 0.42 +0.1
5,895,662 - CA265_RS24195 0.42 -1.5
5,895,700 + CA265_RS24195 0.48 +0.6
5,895,726 - CA265_RS24195 0.52 +0.9
5,895,728 + CA265_RS24195 0.53 +0.2
5,895,800 + CA265_RS24195 0.64 +1.5
5,895,856 - CA265_RS24195 0.74 +0.4
5,895,860 - CA265_RS24195 0.74 +0.3
5,895,881 + CA265_RS24195 0.78 -0.2
5,895,923 - CA265_RS24195 0.84 +0.4
5,895,943 - CA265_RS24195 0.88 +0.3
5,895,972 + +0.1
5,896,152 + +1.0
5,896,152 + +1.4
5,896,155 - -0.7
5,896,157 - -0.3
5,896,253 + CA265_RS24200 0.15 +0.2
5,896,289 + CA265_RS24200 0.23 +0.1
5,896,383 + CA265_RS24200 0.45 -0.3
5,896,388 - CA265_RS24200 0.46 -0.9
5,896,439 - CA265_RS24200 0.57 -0.2
5,896,506 - CA265_RS24200 0.72 -0.0
5,896,541 + CA265_RS24200 0.80 -0.5
5,896,694 + -0.6
5,896,773 + CA265_RS24205 0.13 +0.7
5,896,774 - CA265_RS24205 0.13 -0.3
5,896,789 + CA265_RS24205 0.16 -0.1
5,896,789 + CA265_RS24205 0.16 +0.5
5,896,795 + CA265_RS24205 0.17 -0.6
5,896,842 - CA265_RS24205 0.23 +0.6
5,896,846 - CA265_RS24205 0.24 -0.1
5,896,919 - CA265_RS24205 0.34 -0.0
5,896,919 - CA265_RS24205 0.34 +0.3
5,896,950 + CA265_RS24205 0.39 -0.1

Or see this region's nucleotide sequence