Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20925

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS20915 and CA265_RS20920 are separated by 231 nucleotidesCA265_RS20920 and CA265_RS20925 are separated by 9 nucleotidesCA265_RS20925 and CA265_RS20930 are separated by 29 nucleotides CA265_RS20915: CA265_RS20915 - 50S ribosomal protein L19, at 5,157,083 to 5,157,430 _RS20915 CA265_RS20920: CA265_RS20920 - hypothetical protein, at 5,157,662 to 5,158,151 _RS20920 CA265_RS20925: CA265_RS20925 - hypothetical protein, at 5,158,161 to 5,158,643 _RS20925 CA265_RS20930: CA265_RS20930 - hypothetical protein, at 5,158,673 to 5,159,632 _RS20930 Position (kb) 5158 5159Strain fitness (log2 ratio) -2 -1 0 1 2at 5157.596 kb on - strandat 5157.664 kb on - strandat 5157.707 kb on - strandat 5157.722 kb on - strand, within CA265_RS20920at 5157.761 kb on + strand, within CA265_RS20920at 5157.764 kb on - strand, within CA265_RS20920at 5157.764 kb on - strand, within CA265_RS20920at 5157.764 kb on - strand, within CA265_RS20920at 5157.805 kb on + strand, within CA265_RS20920at 5157.806 kb on - strand, within CA265_RS20920at 5157.843 kb on + strand, within CA265_RS20920at 5157.886 kb on + strand, within CA265_RS20920at 5157.892 kb on + strand, within CA265_RS20920at 5157.892 kb on + strand, within CA265_RS20920at 5157.893 kb on - strand, within CA265_RS20920at 5157.915 kb on - strand, within CA265_RS20920at 5157.922 kb on + strand, within CA265_RS20920at 5158.029 kb on + strand, within CA265_RS20920at 5158.101 kb on - strand, within CA265_RS20920at 5158.153 kb on - strandat 5158.162 kb on + strandat 5158.171 kb on + strandat 5158.254 kb on + strand, within CA265_RS20925at 5158.254 kb on + strand, within CA265_RS20925at 5158.254 kb on + strand, within CA265_RS20925at 5158.254 kb on + strand, within CA265_RS20925at 5158.255 kb on - strand, within CA265_RS20925at 5158.364 kb on - strand, within CA265_RS20925at 5158.433 kb on + strand, within CA265_RS20925at 5158.443 kb on + strand, within CA265_RS20925at 5158.444 kb on - strand, within CA265_RS20925at 5158.508 kb on + strand, within CA265_RS20925at 5158.543 kb on + strand, within CA265_RS20925at 5158.543 kb on + strand, within CA265_RS20925at 5158.553 kb on - strand, within CA265_RS20925at 5158.624 kb on - strandat 5158.801 kb on + strand, within CA265_RS20930at 5158.808 kb on - strand, within CA265_RS20930at 5158.876 kb on + strand, within CA265_RS20930at 5158.925 kb on - strand, within CA265_RS20930at 5158.968 kb on + strand, within CA265_RS20930at 5158.968 kb on + strand, within CA265_RS20930at 5158.969 kb on - strand, within CA265_RS20930at 5158.969 kb on - strand, within CA265_RS20930at 5159.009 kb on + strand, within CA265_RS20930at 5159.012 kb on - strand, within CA265_RS20930at 5159.057 kb on - strand, within CA265_RS20930at 5159.077 kb on - strand, within CA265_RS20930at 5159.082 kb on - strand, within CA265_RS20930at 5159.125 kb on + strand, within CA265_RS20930at 5159.139 kb on - strand, within CA265_RS20930at 5159.139 kb on - strand, within CA265_RS20930at 5159.179 kb on - strand, within CA265_RS20930at 5159.217 kb on + strand, within CA265_RS20930at 5159.266 kb on - strand, within CA265_RS20930at 5159.269 kb on + strand, within CA265_RS20930at 5159.280 kb on + strand, within CA265_RS20930at 5159.280 kb on + strand, within CA265_RS20930at 5159.302 kb on + strand, within CA265_RS20930at 5159.382 kb on + strand, within CA265_RS20930at 5159.382 kb on + strand, within CA265_RS20930at 5159.383 kb on - strand, within CA265_RS20930at 5159.383 kb on - strand, within CA265_RS20930at 5159.384 kb on + strand, within CA265_RS20930at 5159.384 kb on + strand, within CA265_RS20930at 5159.384 kb on + strand, within CA265_RS20930at 5159.385 kb on - strandat 5159.396 kb on - strand, within CA265_RS20930at 5159.396 kb on - strand, within CA265_RS20930at 5159.453 kb on + strand, within CA265_RS20930at 5159.453 kb on + strand, within CA265_RS20930at 5159.465 kb on - strand, within CA265_RS20930at 5159.471 kb on - strand, within CA265_RS20930at 5159.525 kb on - strand, within CA265_RS20930at 5159.584 kb on + strandat 5159.594 kb on - strandat 5159.594 kb on - strandat 5159.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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5,157,596 - -0.2
5,157,664 - -0.3
5,157,707 - +0.4
5,157,722 - CA265_RS20920 0.12 +0.6
5,157,761 + CA265_RS20920 0.20 +0.2
5,157,764 - CA265_RS20920 0.21 +0.6
5,157,764 - CA265_RS20920 0.21 -1.4
5,157,764 - CA265_RS20920 0.21 +0.2
5,157,805 + CA265_RS20920 0.29 +1.2
5,157,806 - CA265_RS20920 0.29 -0.9
5,157,843 + CA265_RS20920 0.37 -0.7
5,157,886 + CA265_RS20920 0.46 -0.3
5,157,892 + CA265_RS20920 0.47 -0.3
5,157,892 + CA265_RS20920 0.47 +0.2
5,157,893 - CA265_RS20920 0.47 +2.0
5,157,915 - CA265_RS20920 0.52 -0.8
5,157,922 + CA265_RS20920 0.53 +0.9
5,158,029 + CA265_RS20920 0.75 +0.7
5,158,101 - CA265_RS20920 0.90 +0.8
5,158,153 - +0.3
5,158,162 + +0.0
5,158,171 + +0.5
5,158,254 + CA265_RS20925 0.19 +2.5
5,158,254 + CA265_RS20925 0.19 +0.0
5,158,254 + CA265_RS20925 0.19 +0.0
5,158,254 + CA265_RS20925 0.19 -0.2
5,158,255 - CA265_RS20925 0.19 -0.1
5,158,364 - CA265_RS20925 0.42 -0.2
5,158,433 + CA265_RS20925 0.56 +0.3
5,158,443 + CA265_RS20925 0.58 +0.4
5,158,444 - CA265_RS20925 0.59 +1.3
5,158,508 + CA265_RS20925 0.72 +0.4
5,158,543 + CA265_RS20925 0.79 +0.3
5,158,543 + CA265_RS20925 0.79 -0.3
5,158,553 - CA265_RS20925 0.81 +0.8
5,158,624 - +0.3
5,158,801 + CA265_RS20930 0.13 +0.3
5,158,808 - CA265_RS20930 0.14 -0.3
5,158,876 + CA265_RS20930 0.21 +1.2
5,158,925 - CA265_RS20930 0.26 +0.2
5,158,968 + CA265_RS20930 0.31 +0.5
5,158,968 + CA265_RS20930 0.31 +0.3
5,158,969 - CA265_RS20930 0.31 +0.0
5,158,969 - CA265_RS20930 0.31 -1.3
5,159,009 + CA265_RS20930 0.35 -0.1
5,159,012 - CA265_RS20930 0.35 -0.2
5,159,057 - CA265_RS20930 0.40 +0.6
5,159,077 - CA265_RS20930 0.42 -0.3
5,159,082 - CA265_RS20930 0.43 +0.9
5,159,125 + CA265_RS20930 0.47 -1.1
5,159,139 - CA265_RS20930 0.49 +1.7
5,159,139 - CA265_RS20930 0.49 +0.6
5,159,179 - CA265_RS20930 0.53 +0.0
5,159,217 + CA265_RS20930 0.57 -1.6
5,159,266 - CA265_RS20930 0.62 +0.3
5,159,269 + CA265_RS20930 0.62 +0.3
5,159,280 + CA265_RS20930 0.63 +1.0
5,159,280 + CA265_RS20930 0.63 +1.0
5,159,302 + CA265_RS20930 0.66 +0.8
5,159,382 + CA265_RS20930 0.74 +1.2
5,159,382 + CA265_RS20930 0.74 +0.9
5,159,383 - CA265_RS20930 0.74 +1.2
5,159,383 - CA265_RS20930 0.74 +0.9
5,159,384 + CA265_RS20930 0.74 +0.4
5,159,384 + CA265_RS20930 0.74 +0.8
5,159,384 + CA265_RS20930 0.74 -0.1
5,159,385 - -0.2
5,159,396 - CA265_RS20930 0.75 -0.2
5,159,396 - CA265_RS20930 0.75 +0.4
5,159,453 + CA265_RS20930 0.81 +0.8
5,159,453 + CA265_RS20930 0.81 +0.0
5,159,465 - CA265_RS20930 0.82 +0.7
5,159,471 - CA265_RS20930 0.83 +0.8
5,159,525 - CA265_RS20930 0.89 -1.8
5,159,584 + +1.4
5,159,594 - +0.8
5,159,594 - +0.3
5,159,616 - -0.6

Or see this region's nucleotide sequence