Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23950 and AO353_23955 are separated by 119 nucleotides AO353_23955 and AO353_23960 overlap by 4 nucleotides
AO353_23950: AO353_23950 - hypothetical protein, at 5,256,527 to 5,257,492
_23950
AO353_23955: AO353_23955 - RND transporter, at 5,257,612 to 5,259,033
_23955
AO353_23960: AO353_23960 - transporter, at 5,259,030 to 5,262,209
_23960
Position (kb) 5257
5258
5259
5260 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5257.175 kb on + strand, within AO353_23950 at 5257.175 kb on + strand, within AO353_23950 at 5257.175 kb on + strand, within AO353_23950 at 5257.352 kb on + strand at 5257.352 kb on + strand, within AO353_23950 at 5257.352 kb on + strand, within AO353_23950 at 5257.353 kb on - strand, within AO353_23950 at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.661 kb on + strand at 5257.662 kb on - strand at 5257.662 kb on - strand at 5257.662 kb on - strand at 5257.662 kb on - strand at 5257.857 kb on + strand, within AO353_23955 at 5257.858 kb on - strand, within AO353_23955 at 5257.858 kb on - strand, within AO353_23955 at 5257.916 kb on + strand, within AO353_23955 at 5257.916 kb on + strand, within AO353_23955 at 5257.917 kb on - strand, within AO353_23955 at 5257.917 kb on - strand, within AO353_23955 at 5257.999 kb on - strand, within AO353_23955 at 5257.999 kb on - strand, within AO353_23955 at 5257.999 kb on - strand, within AO353_23955 at 5258.499 kb on - strand, within AO353_23955 at 5258.646 kb on - strand, within AO353_23955 at 5258.786 kb on + strand, within AO353_23955 at 5258.786 kb on + strand, within AO353_23955 at 5258.963 kb on + strand at 5258.963 kb on + strand at 5258.964 kb on - strand at 5258.964 kb on - strand at 5258.999 kb on - strand at 5259.105 kb on + strand at 5259.105 kb on + strand at 5259.105 kb on + strand at 5259.106 kb on - strand at 5259.106 kb on - strand at 5259.106 kb on - strand at 5259.106 kb on - strand at 5259.106 kb on - strand at 5259.106 kb on - strand at 5259.109 kb on + strand at 5259.109 kb on + strand at 5259.109 kb on + strand at 5259.110 kb on - strand at 5259.110 kb on - strand at 5259.110 kb on - strand at 5259.508 kb on + strand, within AO353_23960 at 5259.508 kb on + strand, within AO353_23960 at 5259.509 kb on - strand, within AO353_23960 at 5259.509 kb on - strand, within AO353_23960 at 5259.541 kb on - strand, within AO353_23960 at 5259.614 kb on - strand, within AO353_23960 at 5259.614 kb on - strand, within AO353_23960 at 5259.682 kb on + strand, within AO353_23960 at 5259.719 kb on + strand, within AO353_23960 at 5259.731 kb on - strand, within AO353_23960 at 5259.731 kb on - strand, within AO353_23960 at 5259.731 kb on - strand, within AO353_23960 at 5259.880 kb on + strand, within AO353_23960 at 5259.880 kb on + strand, within AO353_23960 at 5259.881 kb on - strand, within AO353_23960 at 5259.881 kb on - strand, within AO353_23960 at 5259.913 kb on + strand, within AO353_23960 at 5259.913 kb on + strand, within AO353_23960 at 5259.913 kb on + strand, within AO353_23960 at 5259.914 kb on - strand, within AO353_23960 at 5259.914 kb on - strand, within AO353_23960 at 5259.914 kb on - strand, within AO353_23960 at 5259.914 kb on - strand, within AO353_23960 at 5259.914 kb on - strand, within AO353_23960 at 5259.928 kb on + strand, within AO353_23960 at 5259.929 kb on - strand, within AO353_23960 at 5260.027 kb on + strand, within AO353_23960 at 5260.027 kb on + strand, within AO353_23960 at 5260.028 kb on - strand, within AO353_23960 at 5260.028 kb on - strand, within AO353_23960
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 5,257,175 + AO353_23950 0.67 -1.0 5,257,175 + AO353_23950 0.67 -0.3 5,257,175 + AO353_23950 0.67 +0.1 5,257,352 + +1.4 5,257,352 + AO353_23950 0.85 -1.0 5,257,352 + AO353_23950 0.85 +0.7 5,257,353 - AO353_23950 0.86 +1.0 5,257,661 + +0.4 5,257,661 + +1.3 5,257,661 + +0.1 5,257,661 + -1.4 5,257,661 + -3.0 5,257,661 + -0.2 5,257,661 + +0.4 5,257,662 - -1.7 5,257,662 - -0.9 5,257,662 - +0.5 5,257,662 - -0.6 5,257,857 + AO353_23955 0.17 +0.4 5,257,858 - AO353_23955 0.17 -2.0 5,257,858 - AO353_23955 0.17 +0.2 5,257,916 + AO353_23955 0.21 -0.4 5,257,916 + AO353_23955 0.21 -0.7 5,257,917 - AO353_23955 0.21 -0.7 5,257,917 - AO353_23955 0.21 -0.4 5,257,999 - AO353_23955 0.27 -1.7 5,257,999 - AO353_23955 0.27 -1.4 5,257,999 - AO353_23955 0.27 -2.0 5,258,499 - AO353_23955 0.62 -1.0 5,258,646 - AO353_23955 0.73 -1.5 5,258,786 + AO353_23955 0.83 -1.7 5,258,786 + AO353_23955 0.83 -0.9 5,258,963 + +1.1 5,258,963 + -1.1 5,258,964 - -0.9 5,258,964 - -0.3 5,258,999 - -0.7 5,259,105 + -1.6 5,259,105 + +0.5 5,259,105 + -1.6 5,259,106 - +1.4 5,259,106 - -0.9 5,259,106 - -0.2 5,259,106 - -1.0 5,259,106 - -1.6 5,259,106 - -0.5 5,259,109 + -1.0 5,259,109 + +0.9 5,259,109 + +0.6 5,259,110 - +0.1 5,259,110 - -0.6 5,259,110 - -2.3 5,259,508 + AO353_23960 0.15 -0.4 5,259,508 + AO353_23960 0.15 +0.1 5,259,509 - AO353_23960 0.15 -0.0 5,259,509 - AO353_23960 0.15 -2.6 5,259,541 - AO353_23960 0.16 +0.1 5,259,614 - AO353_23960 0.18 -1.0 5,259,614 - AO353_23960 0.18 +0.8 5,259,682 + AO353_23960 0.21 -1.4 5,259,719 + AO353_23960 0.22 +0.4 5,259,731 - AO353_23960 0.22 +0.6 5,259,731 - AO353_23960 0.22 +1.3 5,259,731 - AO353_23960 0.22 +0.6 5,259,880 + AO353_23960 0.27 +1.7 5,259,880 + AO353_23960 0.27 +0.1 5,259,881 - AO353_23960 0.27 +1.2 5,259,881 - AO353_23960 0.27 -0.2 5,259,913 + AO353_23960 0.28 -0.1 5,259,913 + AO353_23960 0.28 +0.1 5,259,913 + AO353_23960 0.28 +0.7 5,259,914 - AO353_23960 0.28 +0.1 5,259,914 - AO353_23960 0.28 +1.0 5,259,914 - AO353_23960 0.28 +0.8 5,259,914 - AO353_23960 0.28 -1.9 5,259,914 - AO353_23960 0.28 -0.8 5,259,928 + AO353_23960 0.28 -0.0 5,259,929 - AO353_23960 0.28 -0.4 5,260,027 + AO353_23960 0.31 +0.0 5,260,027 + AO353_23960 0.31 -1.2 5,260,028 - AO353_23960 0.31 +0.7 5,260,028 - AO353_23960 0.31 -0.3
Or see this region's nucleotide sequence