Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09405

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09400 and AO353_09405 are separated by 17 nucleotidesAO353_09405 and AO353_09410 are separated by 300 nucleotides AO353_09400: AO353_09400 - hypothetical protein, at 2,064,531 to 2,065,730 _09400 AO353_09405: AO353_09405 - type VI secretion protein, at 2,065,748 to 2,065,888 _09405 AO353_09410: AO353_09410 - Fis family transcriptional regulator, at 2,066,189 to 2,067,706 _09410 Position (kb) 2065 2066Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2065.226 kb on - strand, within AO353_09400at 2065.226 kb on - strand, within AO353_09400at 2065.450 kb on + strand, within AO353_09400at 2065.450 kb on + strand, within AO353_09400at 2065.451 kb on - strand, within AO353_09400at 2065.451 kb on - strand, within AO353_09400at 2065.451 kb on - strand, within AO353_09400at 2065.451 kb on - strand, within AO353_09400at 2065.520 kb on + strand, within AO353_09400at 2065.535 kb on + strand, within AO353_09400at 2065.685 kb on + strandat 2065.791 kb on + strand, within AO353_09405at 2065.791 kb on + strand, within AO353_09405at 2065.812 kb on + strand, within AO353_09405at 2065.812 kb on + strand, within AO353_09405at 2065.813 kb on - strand, within AO353_09405at 2065.813 kb on - strand, within AO353_09405at 2065.813 kb on - strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.841 kb on + strand, within AO353_09405at 2065.842 kb on - strand, within AO353_09405at 2065.842 kb on - strand, within AO353_09405at 2065.842 kb on - strand, within AO353_09405at 2066.071 kb on + strandat 2066.083 kb on + strandat 2066.083 kb on + strandat 2066.084 kb on - strandat 2066.487 kb on + strand, within AO353_09410at 2066.487 kb on + strand, within AO353_09410at 2066.487 kb on + strand, within AO353_09410at 2066.487 kb on + strand, within AO353_09410at 2066.488 kb on - strand, within AO353_09410at 2066.488 kb on - strand, within AO353_09410at 2066.488 kb on - strand, within AO353_09410at 2066.488 kb on - strand, within AO353_09410at 2066.488 kb on - strand, within AO353_09410at 2066.646 kb on + strand, within AO353_09410at 2066.646 kb on + strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.647 kb on - strand, within AO353_09410at 2066.783 kb on + strand, within AO353_09410at 2066.783 kb on + strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410at 2066.784 kb on - strand, within AO353_09410

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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2,065,226 - AO353_09400 0.58 -0.1
2,065,226 - AO353_09400 0.58 +0.0
2,065,450 + AO353_09400 0.77 +2.0
2,065,450 + AO353_09400 0.77 +0.5
2,065,451 - AO353_09400 0.77 +2.0
2,065,451 - AO353_09400 0.77 -1.2
2,065,451 - AO353_09400 0.77 -0.7
2,065,451 - AO353_09400 0.77 -3.0
2,065,520 + AO353_09400 0.82 +1.6
2,065,535 + AO353_09400 0.84 -1.1
2,065,685 + +1.5
2,065,791 + AO353_09405 0.30 -0.2
2,065,791 + AO353_09405 0.30 -1.9
2,065,812 + AO353_09405 0.45 +1.5
2,065,812 + AO353_09405 0.45 -0.5
2,065,813 - AO353_09405 0.46 +0.8
2,065,813 - AO353_09405 0.46 -0.1
2,065,813 - AO353_09405 0.46 -0.9
2,065,841 + AO353_09405 0.66 +0.7
2,065,841 + AO353_09405 0.66 +0.0
2,065,841 + AO353_09405 0.66 -0.7
2,065,841 + AO353_09405 0.66 -1.6
2,065,841 + AO353_09405 0.66 +1.2
2,065,841 + AO353_09405 0.66 -0.0
2,065,842 - AO353_09405 0.67 -1.1
2,065,842 - AO353_09405 0.67 +0.6
2,065,842 - AO353_09405 0.67 -0.5
2,066,071 + -0.1
2,066,083 + -0.1
2,066,083 + +0.5
2,066,084 - +1.3
2,066,487 + AO353_09410 0.20 +0.0
2,066,487 + AO353_09410 0.20 +1.3
2,066,487 + AO353_09410 0.20 -0.4
2,066,487 + AO353_09410 0.20 -0.4
2,066,488 - AO353_09410 0.20 -0.9
2,066,488 - AO353_09410 0.20 -1.2
2,066,488 - AO353_09410 0.20 -0.5
2,066,488 - AO353_09410 0.20 +0.1
2,066,488 - AO353_09410 0.20 +0.0
2,066,646 + AO353_09410 0.30 +0.5
2,066,646 + AO353_09410 0.30 -0.3
2,066,647 - AO353_09410 0.30 -1.3
2,066,647 - AO353_09410 0.30 +0.0
2,066,647 - AO353_09410 0.30 +0.7
2,066,647 - AO353_09410 0.30 -1.9
2,066,647 - AO353_09410 0.30 +0.1
2,066,647 - AO353_09410 0.30 -0.5
2,066,647 - AO353_09410 0.30 +0.9
2,066,783 + AO353_09410 0.39 -0.6
2,066,783 + AO353_09410 0.39 +0.8
2,066,784 - AO353_09410 0.39 -1.0
2,066,784 - AO353_09410 0.39 -0.3
2,066,784 - AO353_09410 0.39 +0.6
2,066,784 - AO353_09410 0.39 +0.1
2,066,784 - AO353_09410 0.39 -0.5
2,066,784 - AO353_09410 0.39 -2.0

Or see this region's nucleotide sequence