Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04530 and AO353_04535 are separated by 307 nucleotides AO353_04535 and AO353_04540 are separated by 60 nucleotides AO353_04540 and AO353_04545 are separated by 7 nucleotides
AO353_04530: AO353_04530 - LPS export ABC transporter permease LptF, at 977,857 to 978,975
_04530
AO353_04535: AO353_04535 - aminopeptidase, at 979,283 to 980,773
_04535
AO353_04540: AO353_04540 - DNA polymerase III subunit chi, at 980,834 to 981,262
_04540
AO353_04545: AO353_04545 - DNA polymerase III subunit chi, at 981,270 to 981,692
_04545
Position (kb) 979
980
981 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 979.002 kb on - strand at 979.025 kb on - strand at 979.025 kb on - strand at 979.126 kb on + strand at 979.126 kb on + strand at 979.126 kb on + strand at 979.126 kb on + strand at 979.126 kb on + strand at 979.127 kb on - strand at 979.127 kb on - strand at 979.212 kb on + strand at 979.212 kb on + strand at 979.213 kb on - strand at 979.213 kb on - strand at 979.214 kb on + strand at 979.214 kb on + strand at 979.214 kb on + strand at 979.214 kb on + strand at 979.214 kb on + strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.215 kb on - strand at 979.218 kb on + strand at 979.218 kb on + strand at 979.218 kb on + strand at 979.218 kb on + strand at 979.219 kb on - strand at 979.219 kb on - strand at 979.219 kb on - strand at 979.243 kb on + strand at 979.266 kb on + strand at 979.266 kb on + strand at 979.267 kb on - strand at 979.267 kb on - strand at 979.267 kb on - strand at 979.267 kb on - strand at 979.296 kb on + strand at 979.296 kb on + strand at 979.296 kb on + strand at 979.296 kb on + strand at 979.297 kb on - strand at 979.297 kb on - strand at 979.569 kb on + strand, within AO353_04535 at 979.694 kb on + strand, within AO353_04535 at 979.694 kb on + strand, within AO353_04535 at 979.694 kb on + strand, within AO353_04535 at 979.694 kb on + strand, within AO353_04535 at 979.694 kb on + strand, within AO353_04535 at 979.695 kb on - strand, within AO353_04535 at 979.695 kb on - strand, within AO353_04535 at 979.695 kb on - strand, within AO353_04535 at 979.864 kb on + strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.982 kb on + strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.364 kb on - strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.852 kb on + strand at 980.853 kb on - strand at 980.939 kb on + strand, within AO353_04540 at 980.939 kb on + strand, within AO353_04540 at 980.940 kb on - strand, within AO353_04540 at 981.051 kb on + strand, within AO353_04540 at 981.249 kb on + strand at 981.249 kb on + strand at 981.681 kb on + strand at 981.723 kb on + strand at 981.723 kb on + strand at 981.724 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.740 kb on - strand at 981.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 979,002 - +0.2 979,025 - -1.1 979,025 - +0.5 979,126 + +0.5 979,126 + -0.6 979,126 + -1.1 979,126 + -0.5 979,126 + +3.3 979,127 - +0.2 979,127 - -0.1 979,212 + -1.1 979,212 + -0.7 979,213 - -2.0 979,213 - +0.6 979,214 + -0.6 979,214 + -0.8 979,214 + +1.2 979,214 + +0.6 979,214 + -0.2 979,215 - -3.9 979,215 - -0.2 979,215 - -1.2 979,215 - +0.2 979,215 - -1.2 979,215 - +0.2 979,215 - -0.9 979,215 - -1.9 979,215 - -1.8 979,215 - -1.2 979,215 - -1.0 979,218 + -0.0 979,218 + -0.6 979,218 + -1.5 979,218 + -1.8 979,219 - -3.2 979,219 - -1.1 979,219 - +2.6 979,243 + -3.0 979,266 + -1.5 979,266 + -2.3 979,267 - -0.4 979,267 - -1.5 979,267 - +0.2 979,267 - -1.1 979,296 + -0.2 979,296 + -1.3 979,296 + -1.5 979,296 + -0.3 979,297 - -1.8 979,297 - -0.8 979,569 + AO353_04535 0.19 -2.6 979,694 + AO353_04535 0.28 -0.6 979,694 + AO353_04535 0.28 -2.8 979,694 + AO353_04535 0.28 -1.5 979,694 + AO353_04535 0.28 -1.1 979,694 + AO353_04535 0.28 -1.1 979,695 - AO353_04535 0.28 -0.2 979,695 - AO353_04535 0.28 -1.3 979,695 - AO353_04535 0.28 -0.2 979,864 + AO353_04535 0.39 -2.2 979,865 - AO353_04535 0.39 -2.1 979,865 - AO353_04535 0.39 -1.2 979,982 + AO353_04535 0.47 -2.1 979,983 - AO353_04535 0.47 -2.8 979,983 - AO353_04535 0.47 -1.2 980,033 + AO353_04535 0.50 -1.3 980,033 + AO353_04535 0.50 -1.8 980,063 + AO353_04535 0.52 -1.6 980,063 + AO353_04535 0.52 -0.4 980,063 + AO353_04535 0.52 -1.9 980,063 + AO353_04535 0.52 -2.6 980,064 - AO353_04535 0.52 -2.0 980,064 - AO353_04535 0.52 -0.5 980,064 - AO353_04535 0.52 -0.4 980,064 - AO353_04535 0.52 +0.4 980,064 - AO353_04535 0.52 -1.2 980,064 - AO353_04535 0.52 -1.8 980,106 + AO353_04535 0.55 +1.2 980,106 + AO353_04535 0.55 -0.6 980,106 + AO353_04535 0.55 -1.5 980,107 - AO353_04535 0.55 +0.2 980,107 - AO353_04535 0.55 -2.1 980,107 - AO353_04535 0.55 -1.0 980,107 - AO353_04535 0.55 -1.0 980,107 - AO353_04535 0.55 -1.0 980,144 + AO353_04535 0.58 -2.1 980,144 + AO353_04535 0.58 -2.2 980,144 + AO353_04535 0.58 -2.9 980,144 + AO353_04535 0.58 -2.2 980,145 - AO353_04535 0.58 -1.2 980,145 - AO353_04535 0.58 +0.6 980,287 + AO353_04535 0.67 -1.1 980,287 + AO353_04535 0.67 -1.5 980,287 + AO353_04535 0.67 -2.3 980,287 + AO353_04535 0.67 -3.6 980,363 + AO353_04535 0.72 -2.2 980,363 + AO353_04535 0.72 -0.3 980,364 - AO353_04535 0.73 -2.3 980,546 + AO353_04535 0.85 -2.6 980,546 + AO353_04535 0.85 -0.0 980,546 + AO353_04535 0.85 -1.1 980,852 + -0.8 980,853 - -1.0 980,939 + AO353_04540 0.24 +1.2 980,939 + AO353_04540 0.24 -1.1 980,940 - AO353_04540 0.25 -1.1 981,051 + AO353_04540 0.51 -0.6 981,249 + -1.4 981,249 + +1.2 981,681 + -1.1 981,723 + -1.5 981,723 + +0.2 981,724 - +0.4 981,730 - -2.2 981,730 - +1.2 981,730 - +1.2 981,739 + -0.8 981,739 + +0.8 981,739 + +0.5 981,740 - +0.8 981,740 - +0.1
Or see this region's nucleotide sequence