Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04435 and AO353_04440 are separated by 39 nucleotides AO353_04440 and AO353_04445 are separated by 435 nucleotides AO353_04445 and AO353_04450 are separated by 31 nucleotides
AO353_04435: AO353_04435 - ADP-ribose pyrophosphatase, at 953,715 to 954,266
_04435
AO353_04440: AO353_04440 - hypothetical protein, at 954,306 to 954,809
_04440
AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976
_04445
AO353_04450: AO353_04450 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 956,008 to 957,114
_04450
Position (kb) 955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.264 kb on + strand at 954.264 kb on + strand at 954.264 kb on + strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.271 kb on + strand at 954.271 kb on + strand at 954.278 kb on - strand at 954.278 kb on - strand at 954.285 kb on - strand at 954.285 kb on - strand at 954.304 kb on + strand at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.785 kb on + strand at 954.786 kb on - strand at 954.786 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.892 kb on - strand at 954.892 kb on - strand at 954.983 kb on + strand at 954.983 kb on + strand at 954.984 kb on - strand at 954.985 kb on + strand at 954.985 kb on + strand at 954.986 kb on - strand at 955.025 kb on + strand at 955.026 kb on - strand at 955.026 kb on - strand at 955.066 kb on + strand at 955.067 kb on - strand at 955.067 kb on - strand at 955.090 kb on + strand at 955.091 kb on - strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.296 kb on + strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.632 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.665 kb on - strand, within AO353_04445 at 955.752 kb on + strand, within AO353_04445 at 955.753 kb on - strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.890 kb on + strand, within AO353_04445 at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.944 kb on + strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.947 kb on + strand at 955.948 kb on - strand at 955.948 kb on - strand at 955.948 kb on - strand at 956.128 kb on + strand, within AO353_04450 at 956.129 kb on - strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.447 kb on - strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.626 kb on - strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.750 kb on + strand, within AO353_04450 at 956.751 kb on - strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.819 kb on - strand, within AO353_04450
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 954,264 + +0.1 954,264 + -0.3 954,264 + -1.0 954,265 - -1.5 954,265 - +2.0 954,265 - -0.4 954,265 - +0.2 954,271 + +0.6 954,271 + +0.6 954,278 - -0.5 954,278 - +0.4 954,285 - +0.1 954,285 - -0.5 954,304 + +0.1 954,462 + AO353_04440 0.31 -0.5 954,462 + AO353_04440 0.31 +0.2 954,462 + AO353_04440 0.31 -0.0 954,522 - AO353_04440 0.43 +1.2 954,522 - AO353_04440 0.43 -0.7 954,522 - AO353_04440 0.43 -0.9 954,522 - AO353_04440 0.43 +0.0 954,537 + AO353_04440 0.46 -1.0 954,537 + AO353_04440 0.46 +0.2 954,537 + AO353_04440 0.46 +0.5 954,538 - AO353_04440 0.46 +2.1 954,538 - AO353_04440 0.46 -0.4 954,538 - AO353_04440 0.46 +0.6 954,538 - AO353_04440 0.46 -1.0 954,538 - AO353_04440 0.46 -1.5 954,763 + +0.2 954,763 + +2.1 954,763 + -0.0 954,763 + -0.2 954,764 - +1.2 954,764 - +1.8 954,764 - -0.8 954,764 - -0.4 954,764 - -1.2 954,764 - +1.1 954,785 + -0.8 954,786 - -1.5 954,786 - +0.2 954,819 - +0.4 954,819 - +1.2 954,819 - -0.6 954,819 - +0.6 954,892 - +0.1 954,892 - +0.3 954,983 + +0.2 954,983 + -1.2 954,984 - -0.5 954,985 + -0.5 954,985 + -0.6 954,986 - +0.5 955,025 + -1.3 955,026 - +1.6 955,026 - -0.2 955,066 + +0.7 955,067 - -0.9 955,067 - -0.2 955,090 + +1.6 955,091 - +0.2 955,238 + +0.8 955,238 + +1.1 955,238 + +0.1 955,239 - +0.7 955,239 - +0.2 955,239 - -1.3 955,239 - -2.3 955,239 - +0.1 955,296 + -2.0 955,297 - -0.7 955,297 - -1.6 955,297 - +0.9 955,632 + AO353_04445 0.53 -0.8 955,664 + AO353_04445 0.57 -0.4 955,664 + AO353_04445 0.57 +0.1 955,664 + AO353_04445 0.57 -0.9 955,665 - AO353_04445 0.57 -2.1 955,752 + AO353_04445 0.69 -1.0 955,753 - AO353_04445 0.69 -1.5 955,758 + AO353_04445 0.70 -2.0 955,758 + AO353_04445 0.70 +0.2 955,890 + AO353_04445 0.88 -0.8 955,929 + -2.1 955,929 + -0.7 955,929 + +1.4 955,929 + -1.0 955,929 + +0.8 955,929 + +0.6 955,929 + +0.1 955,929 + +0.8 955,929 + -1.3 955,930 - +0.1 955,930 - -1.3 955,930 - -1.2 955,930 - +0.1 955,930 - +1.4 955,930 - -0.5 955,930 - +2.0 955,930 - +0.7 955,930 - -0.1 955,930 - +0.0 955,930 - +0.1 955,930 - +0.1 955,930 - -0.6 955,930 - -0.3 955,944 + -1.7 955,944 + +0.1 955,945 - +0.3 955,945 - +1.1 955,947 + -0.6 955,948 - +0.7 955,948 - -1.1 955,948 - -0.2 956,128 + AO353_04450 0.11 +0.2 956,129 - AO353_04450 0.11 +0.2 956,374 + AO353_04450 0.33 -1.7 956,374 + AO353_04450 0.33 -1.3 956,374 + AO353_04450 0.33 -0.1 956,374 + AO353_04450 0.33 -0.4 956,374 + AO353_04450 0.33 +0.1 956,374 + AO353_04450 0.33 +0.2 956,374 + AO353_04450 0.33 +1.2 956,374 + AO353_04450 0.33 -0.6 956,374 + AO353_04450 0.33 +1.0 956,375 - AO353_04450 0.33 +1.5 956,375 - AO353_04450 0.33 +0.2 956,375 - AO353_04450 0.33 +0.3 956,375 - AO353_04450 0.33 +1.1 956,375 - AO353_04450 0.33 +0.3 956,375 - AO353_04450 0.33 -1.0 956,375 - AO353_04450 0.33 -0.7 956,446 + AO353_04450 0.40 -1.0 956,446 + AO353_04450 0.40 +1.4 956,446 + AO353_04450 0.40 -0.4 956,447 - AO353_04450 0.40 -0.2 956,569 + AO353_04450 0.51 -0.1 956,569 + AO353_04450 0.51 +1.1 956,569 + AO353_04450 0.51 +0.4 956,570 - AO353_04450 0.51 -0.2 956,570 - AO353_04450 0.51 -1.3 956,623 + AO353_04450 0.56 +0.4 956,623 + AO353_04450 0.56 +0.1 956,623 + AO353_04450 0.56 -0.6 956,623 + AO353_04450 0.56 -0.9 956,623 + AO353_04450 0.56 -0.4 956,623 + AO353_04450 0.56 +0.6 956,623 + AO353_04450 0.56 +0.2 956,623 + AO353_04450 0.56 +0.2 956,623 + AO353_04450 0.56 -0.9 956,623 + AO353_04450 0.56 -1.0 956,623 + AO353_04450 0.56 -0.3 956,623 + AO353_04450 0.56 -0.3 956,623 + AO353_04450 0.56 -0.1 956,623 + AO353_04450 0.56 -0.0 956,624 - AO353_04450 0.56 -0.9 956,624 - AO353_04450 0.56 -1.5 956,624 - AO353_04450 0.56 -2.4 956,624 - AO353_04450 0.56 +1.7 956,624 - AO353_04450 0.56 -0.5 956,624 - AO353_04450 0.56 +1.4 956,624 - AO353_04450 0.56 +0.2 956,624 - AO353_04450 0.56 -0.9 956,624 - AO353_04450 0.56 -1.8 956,624 - AO353_04450 0.56 -0.0 956,626 - AO353_04450 0.56 -1.4 956,692 + AO353_04450 0.62 -0.1 956,692 + AO353_04450 0.62 +0.2 956,692 + AO353_04450 0.62 -1.4 956,693 - AO353_04450 0.62 -2.0 956,693 - AO353_04450 0.62 +0.4 956,750 + AO353_04450 0.67 -0.3 956,751 - AO353_04450 0.67 +2.0 956,770 + AO353_04450 0.69 +0.7 956,770 + AO353_04450 0.69 -0.8 956,770 + AO353_04450 0.69 +0.7 956,770 + AO353_04450 0.69 -0.8 956,771 - AO353_04450 0.69 +0.6 956,771 - AO353_04450 0.69 -0.6 956,771 - AO353_04450 0.69 +0.6 956,771 - AO353_04450 0.69 +0.0 956,818 + AO353_04450 0.73 -0.4 956,818 + AO353_04450 0.73 -0.2 956,818 + AO353_04450 0.73 -0.4 956,818 + AO353_04450 0.73 -0.0 956,818 + AO353_04450 0.73 -0.6 956,818 + AO353_04450 0.73 +0.9 956,818 + AO353_04450 0.73 -0.2 956,819 - AO353_04450 0.73 +0.2
Or see this region's nucleotide sequence