Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS22045

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS22035 and ABZR86_RS22040 are separated by 59 nucleotidesABZR86_RS22040 and ABZR86_RS22045 overlap by 4 nucleotidesABZR86_RS22045 and ABZR86_RS22050 are separated by 106 nucleotides ABZR86_RS22035: ABZR86_RS22035 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 368,681 to 370,063 _RS22035 ABZR86_RS22040: ABZR86_RS22040 - lipoprotein insertase outer membrane protein LolB, at 370,123 to 370,731 _RS22040 ABZR86_RS22045: ABZR86_RS22045 - tetratricopeptide repeat protein, at 370,728 to 372,464 _RS22045 ABZR86_RS22050: ABZR86_RS22050 - glutamyl-tRNA reductase, at 372,571 to 373,845 _RS22050 Position (kb) 370 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.958 kb on - strandat 370.026 kb on - strandat 370.057 kb on - strandat 370.057 kb on - strandat 370.107 kb on + strandat 370.124 kb on + strandat 370.124 kb on + strandat 370.125 kb on - strandat 370.933 kb on + strand, within ABZR86_RS22045at 371.047 kb on + strand, within ABZR86_RS22045at 371.047 kb on + strand, within ABZR86_RS22045at 371.048 kb on - strand, within ABZR86_RS22045at 371.048 kb on - strand, within ABZR86_RS22045at 371.143 kb on + strand, within ABZR86_RS22045at 371.143 kb on + strand, within ABZR86_RS22045at 371.143 kb on + strand, within ABZR86_RS22045at 371.161 kb on + strand, within ABZR86_RS22045at 371.245 kb on + strand, within ABZR86_RS22045at 371.245 kb on + strand, within ABZR86_RS22045at 371.245 kb on + strand, within ABZR86_RS22045at 371.245 kb on + strand, within ABZR86_RS22045at 371.246 kb on - strand, within ABZR86_RS22045at 371.246 kb on - strand, within ABZR86_RS22045at 371.246 kb on - strand, within ABZR86_RS22045at 371.246 kb on - strand, within ABZR86_RS22045at 371.246 kb on - strand, within ABZR86_RS22045at 371.260 kb on - strand, within ABZR86_RS22045at 371.267 kb on - strand, within ABZR86_RS22045at 371.267 kb on - strand, within ABZR86_RS22045at 371.299 kb on + strand, within ABZR86_RS22045at 371.423 kb on - strand, within ABZR86_RS22045at 371.423 kb on - strand, within ABZR86_RS22045at 371.527 kb on + strand, within ABZR86_RS22045at 371.587 kb on + strand, within ABZR86_RS22045at 371.587 kb on + strand, within ABZR86_RS22045at 371.587 kb on + strand, within ABZR86_RS22045at 371.588 kb on - strand, within ABZR86_RS22045at 371.588 kb on - strand, within ABZR86_RS22045at 371.638 kb on + strand, within ABZR86_RS22045at 371.638 kb on + strand, within ABZR86_RS22045at 371.639 kb on - strand, within ABZR86_RS22045at 371.639 kb on - strand, within ABZR86_RS22045at 371.639 kb on - strand, within ABZR86_RS22045at 371.639 kb on - strand, within ABZR86_RS22045at 371.668 kb on + strand, within ABZR86_RS22045at 371.669 kb on - strand, within ABZR86_RS22045at 371.755 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.779 kb on + strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.780 kb on - strand, within ABZR86_RS22045at 371.834 kb on - strand, within ABZR86_RS22045at 372.223 kb on + strand, within ABZR86_RS22045at 372.223 kb on + strand, within ABZR86_RS22045at 372.224 kb on - strand, within ABZR86_RS22045at 372.467 kb on + strandat 372.467 kb on + strandat 372.468 kb on - strandat 372.468 kb on - strandat 372.468 kb on - strandat 372.468 kb on - strandat 372.487 kb on + strandat 372.487 kb on + strandat 372.487 kb on + strandat 372.487 kb on + strandat 372.527 kb on + strandat 372.527 kb on + strandat 372.527 kb on + strandat 372.527 kb on + strandat 372.528 kb on - strandat 372.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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369,958 - -0.1
370,026 - -0.1
370,057 - +0.3
370,057 - -0.2
370,107 + +1.0
370,124 + +0.7
370,124 + -1.2
370,125 - +1.1
370,933 + ABZR86_RS22045 0.12 -1.0
371,047 + ABZR86_RS22045 0.18 -0.0
371,047 + ABZR86_RS22045 0.18 +1.5
371,048 - ABZR86_RS22045 0.18 -1.2
371,048 - ABZR86_RS22045 0.18 +0.8
371,143 + ABZR86_RS22045 0.24 +0.1
371,143 + ABZR86_RS22045 0.24 -1.6
371,143 + ABZR86_RS22045 0.24 +0.2
371,161 + ABZR86_RS22045 0.25 -1.2
371,245 + ABZR86_RS22045 0.30 +0.0
371,245 + ABZR86_RS22045 0.30 -0.0
371,245 + ABZR86_RS22045 0.30 -1.4
371,245 + ABZR86_RS22045 0.30 -0.8
371,246 - ABZR86_RS22045 0.30 -1.5
371,246 - ABZR86_RS22045 0.30 +0.0
371,246 - ABZR86_RS22045 0.30 -0.4
371,246 - ABZR86_RS22045 0.30 -0.1
371,246 - ABZR86_RS22045 0.30 +0.1
371,260 - ABZR86_RS22045 0.31 +0.4
371,267 - ABZR86_RS22045 0.31 -0.7
371,267 - ABZR86_RS22045 0.31 +0.5
371,299 + ABZR86_RS22045 0.33 +0.1
371,423 - ABZR86_RS22045 0.40 -3.2
371,423 - ABZR86_RS22045 0.40 +1.3
371,527 + ABZR86_RS22045 0.46 +0.2
371,587 + ABZR86_RS22045 0.49 -0.9
371,587 + ABZR86_RS22045 0.49 -1.2
371,587 + ABZR86_RS22045 0.49 -0.8
371,588 - ABZR86_RS22045 0.50 -0.3
371,588 - ABZR86_RS22045 0.50 -0.4
371,638 + ABZR86_RS22045 0.52 -0.2
371,638 + ABZR86_RS22045 0.52 -0.3
371,639 - ABZR86_RS22045 0.52 -0.1
371,639 - ABZR86_RS22045 0.52 -0.4
371,639 - ABZR86_RS22045 0.52 -0.4
371,639 - ABZR86_RS22045 0.52 +2.4
371,668 + ABZR86_RS22045 0.54 +0.2
371,669 - ABZR86_RS22045 0.54 +0.1
371,755 + ABZR86_RS22045 0.59 -0.7
371,779 + ABZR86_RS22045 0.61 -1.1
371,779 + ABZR86_RS22045 0.61 -3.5
371,779 + ABZR86_RS22045 0.61 -1.2
371,779 + ABZR86_RS22045 0.61 -1.8
371,779 + ABZR86_RS22045 0.61 -1.5
371,779 + ABZR86_RS22045 0.61 -1.1
371,779 + ABZR86_RS22045 0.61 -2.2
371,779 + ABZR86_RS22045 0.61 -1.4
371,779 + ABZR86_RS22045 0.61 +1.8
371,779 + ABZR86_RS22045 0.61 -1.8
371,779 + ABZR86_RS22045 0.61 +1.1
371,780 - ABZR86_RS22045 0.61 +0.6
371,780 - ABZR86_RS22045 0.61 -0.8
371,780 - ABZR86_RS22045 0.61 -1.2
371,780 - ABZR86_RS22045 0.61 +2.0
371,780 - ABZR86_RS22045 0.61 +0.5
371,780 - ABZR86_RS22045 0.61 +0.2
371,780 - ABZR86_RS22045 0.61 +0.4
371,780 - ABZR86_RS22045 0.61 +0.3
371,780 - ABZR86_RS22045 0.61 -0.3
371,780 - ABZR86_RS22045 0.61 -0.7
371,780 - ABZR86_RS22045 0.61 -0.4
371,780 - ABZR86_RS22045 0.61 -0.9
371,780 - ABZR86_RS22045 0.61 +0.2
371,834 - ABZR86_RS22045 0.64 -1.5
372,223 + ABZR86_RS22045 0.86 -1.8
372,223 + ABZR86_RS22045 0.86 +0.0
372,224 - ABZR86_RS22045 0.86 -1.2
372,467 + -0.8
372,467 + -0.7
372,468 - +0.5
372,468 - -0.1
372,468 - +0.3
372,468 - +0.0
372,487 + +1.3
372,487 + +0.2
372,487 + +1.9
372,487 + -0.3
372,527 + -0.3
372,527 + -0.0
372,527 + +0.3
372,527 + -0.2
372,528 - -0.3
372,532 + -0.0

Or see this region's nucleotide sequence