Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20990 and ABZR86_RS20995 are separated by 5 nucleotides ABZR86_RS20995 and ABZR86_RS21000 are separated by 156 nucleotides ABZR86_RS21000 and ABZR86_RS21005 are separated by 190 nucleotides
ABZR86_RS20990: ABZR86_RS20990 - hypothetical protein, at 171,540 to 172,115
_RS20990
ABZR86_RS20995: ABZR86_RS20995 - TetR/AcrR family transcriptional regulator, at 172,121 to 172,750
_RS20995
ABZR86_RS21000: ABZR86_RS21000 - hypothetical protein, at 172,907 to 173,395
_RS21000
ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575
_RS21005
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.992 kb on - strand, within ABZR86_RS20990 at 171.992 kb on - strand, within ABZR86_RS20990 at 172.140 kb on + strand at 172.261 kb on - strand, within ABZR86_RS20995 at 172.337 kb on + strand, within ABZR86_RS20995 at 172.346 kb on + strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.599 kb on + strand, within ABZR86_RS20995 at 172.660 kb on - strand, within ABZR86_RS20995 at 172.812 kb on + strand at 172.980 kb on - strand, within ABZR86_RS21000 at 173.252 kb on + strand, within ABZR86_RS21000 at 173.253 kb on - strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.366 kb on + strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.393 kb on + strand at 173.479 kb on + strand at 173.578 kb on + strand at 173.578 kb on + strand at 173.579 kb on - strand at 173.591 kb on + strand at 173.591 kb on + strand at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.757 kb on + strand, within ABZR86_RS21005 at 173.757 kb on + strand, within ABZR86_RS21005 at 173.839 kb on - strand, within ABZR86_RS21005 at 173.913 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.111 kb on + strand, within ABZR86_RS21005 at 174.111 kb on + strand, within ABZR86_RS21005 at 174.112 kb on - strand, within ABZR86_RS21005 at 174.112 kb on - strand, within ABZR86_RS21005 at 174.182 kb on + strand, within ABZR86_RS21005 at 174.182 kb on + strand, within ABZR86_RS21005 at 174.183 kb on - strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.204 kb on + strand, within ABZR86_RS21005 at 174.205 kb on - strand, within ABZR86_RS21005 at 174.205 kb on - strand, within ABZR86_RS21005 at 174.228 kb on + strand, within ABZR86_RS21005 at 174.250 kb on - strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 171,992 - ABZR86_RS20990 0.78 -0.6 171,992 - ABZR86_RS20990 0.78 +0.2 172,140 + +0.1 172,261 - ABZR86_RS20995 0.22 -0.8 172,337 + ABZR86_RS20995 0.34 -1.3 172,346 + ABZR86_RS20995 0.36 +0.8 172,347 - ABZR86_RS20995 0.36 -0.0 172,347 - ABZR86_RS20995 0.36 -1.1 172,347 - ABZR86_RS20995 0.36 +0.2 172,347 - ABZR86_RS20995 0.36 +1.3 172,599 + ABZR86_RS20995 0.76 +0.4 172,660 - ABZR86_RS20995 0.86 -0.9 172,812 + +1.4 172,980 - ABZR86_RS21000 0.15 -1.6 173,252 + ABZR86_RS21000 0.71 -1.2 173,253 - ABZR86_RS21000 0.71 -0.9 173,327 + ABZR86_RS21000 0.86 -2.0 173,327 + ABZR86_RS21000 0.86 +0.8 173,328 - ABZR86_RS21000 0.86 -0.9 173,328 - ABZR86_RS21000 0.86 -0.5 173,328 - ABZR86_RS21000 0.86 -0.9 173,328 - ABZR86_RS21000 0.86 -0.1 173,328 - ABZR86_RS21000 0.86 +0.5 173,328 - ABZR86_RS21000 0.86 +0.5 173,366 + -0.5 173,367 - -0.2 173,367 - +0.4 173,367 - -0.8 173,393 + -0.6 173,479 + +0.8 173,578 + -0.9 173,578 + -0.7 173,579 - +0.4 173,591 + -0.9 173,591 + -0.8 173,751 + ABZR86_RS21005 0.17 +0.4 173,751 + ABZR86_RS21005 0.17 +0.1 173,751 + ABZR86_RS21005 0.17 -0.2 173,751 + ABZR86_RS21005 0.17 +0.1 173,752 - ABZR86_RS21005 0.17 +0.1 173,752 - ABZR86_RS21005 0.17 -2.2 173,752 - ABZR86_RS21005 0.17 +0.3 173,757 + ABZR86_RS21005 0.17 +0.4 173,757 + ABZR86_RS21005 0.17 +1.8 173,839 - ABZR86_RS21005 0.26 -0.2 173,913 + ABZR86_RS21005 0.33 -0.2 174,105 + ABZR86_RS21005 0.52 +0.0 174,105 + ABZR86_RS21005 0.52 +0.3 174,105 + ABZR86_RS21005 0.52 +0.6 174,105 + ABZR86_RS21005 0.52 -0.4 174,106 - ABZR86_RS21005 0.53 -1.0 174,106 - ABZR86_RS21005 0.53 -0.6 174,106 - ABZR86_RS21005 0.53 +0.3 174,106 - ABZR86_RS21005 0.53 +0.6 174,106 - ABZR86_RS21005 0.53 -0.0 174,106 - ABZR86_RS21005 0.53 +0.8 174,107 + ABZR86_RS21005 0.53 +1.8 174,107 + ABZR86_RS21005 0.53 -3.1 174,107 + ABZR86_RS21005 0.53 +0.1 174,107 + ABZR86_RS21005 0.53 +2.8 174,108 - ABZR86_RS21005 0.53 +0.3 174,108 - ABZR86_RS21005 0.53 -1.5 174,108 - ABZR86_RS21005 0.53 +0.4 174,111 + ABZR86_RS21005 0.53 -0.7 174,111 + ABZR86_RS21005 0.53 +1.0 174,112 - ABZR86_RS21005 0.53 +0.2 174,112 - ABZR86_RS21005 0.53 +0.0 174,182 + ABZR86_RS21005 0.60 -0.6 174,182 + ABZR86_RS21005 0.60 -0.3 174,183 - ABZR86_RS21005 0.60 -0.2 174,200 + ABZR86_RS21005 0.62 -0.5 174,200 + ABZR86_RS21005 0.62 +1.2 174,200 + ABZR86_RS21005 0.62 -0.0 174,200 + ABZR86_RS21005 0.62 +0.2 174,201 - ABZR86_RS21005 0.62 +0.4 174,201 - ABZR86_RS21005 0.62 -0.9 174,201 - ABZR86_RS21005 0.62 -0.5 174,204 + ABZR86_RS21005 0.62 +0.1 174,205 - ABZR86_RS21005 0.63 -1.5 174,205 - ABZR86_RS21005 0.63 -0.4 174,228 + ABZR86_RS21005 0.65 +1.2 174,250 - ABZR86_RS21005 0.67 +0.8 174,273 + ABZR86_RS21005 0.69 +0.2 174,273 + ABZR86_RS21005 0.69 -0.3 174,273 + ABZR86_RS21005 0.69 +0.1 174,274 - ABZR86_RS21005 0.69 +0.2 174,274 - ABZR86_RS21005 0.69 +0.3 174,274 - ABZR86_RS21005 0.69 -0.5
Or see this region's nucleotide sequence