Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04270 and ABZR86_RS04275 are separated by 8 nucleotides ABZR86_RS04275 and ABZR86_RS04280 are separated by 87 nucleotides ABZR86_RS04280 and ABZR86_RS04285 overlap by 4 nucleotides ABZR86_RS04285 and ABZR86_RS04290 are separated by 17 nucleotides
ABZR86_RS04270: ABZR86_RS04270 - universal stress protein, at 959,798 to 960,235
_RS04270
ABZR86_RS04275: ABZR86_RS04275 - universal stress protein, at 960,244 to 960,657
_RS04275
ABZR86_RS04280: ABZR86_RS04280 - cation-translocating P-type ATPase, at 960,745 to 963,264
_RS04280
ABZR86_RS04285: ABZR86_RS04285 - universal stress protein, at 963,261 to 964,067
_RS04285
ABZR86_RS04290: ABZR86_RS04290 - cytochrome b/b6 domain-containing protein, at 964,085 to 964,726
_RS04290
Position (kb) 960
961
962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.794 kb on + strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.795 kb on - strand at 959.875 kb on + strand, within ABZR86_RS04270 at 959.875 kb on + strand, within ABZR86_RS04270 at 959.875 kb on + strand, within ABZR86_RS04270 at 959.875 kb on + strand, within ABZR86_RS04270 at 959.876 kb on - strand, within ABZR86_RS04270 at 959.876 kb on - strand, within ABZR86_RS04270 at 959.876 kb on - strand, within ABZR86_RS04270 at 959.920 kb on - strand, within ABZR86_RS04270 at 959.930 kb on + strand, within ABZR86_RS04270 at 959.931 kb on - strand, within ABZR86_RS04270 at 959.971 kb on - strand, within ABZR86_RS04270 at 959.971 kb on - strand, within ABZR86_RS04270 at 959.971 kb on - strand, within ABZR86_RS04270 at 959.971 kb on - strand, within ABZR86_RS04270 at 960.096 kb on + strand, within ABZR86_RS04270 at 960.096 kb on + strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.097 kb on - strand, within ABZR86_RS04270 at 960.154 kb on + strand, within ABZR86_RS04270 at 960.154 kb on + strand, within ABZR86_RS04270 at 960.154 kb on + strand, within ABZR86_RS04270 at 960.155 kb on - strand, within ABZR86_RS04270 at 960.155 kb on - strand, within ABZR86_RS04270 at 960.155 kb on - strand, within ABZR86_RS04270 at 960.155 kb on - strand, within ABZR86_RS04270 at 960.202 kb on + strand at 960.203 kb on - strand at 960.522 kb on - strand, within ABZR86_RS04275 at 960.568 kb on + strand, within ABZR86_RS04275 at 960.602 kb on + strand, within ABZR86_RS04275 at 960.602 kb on + strand, within ABZR86_RS04275 at 960.603 kb on - strand, within ABZR86_RS04275 at 960.603 kb on - strand, within ABZR86_RS04275 at 960.603 kb on - strand, within ABZR86_RS04275 at 960.623 kb on + strand at 960.623 kb on + strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.624 kb on - strand at 960.627 kb on + strand at 960.627 kb on + strand at 960.627 kb on + strand at 960.627 kb on + strand at 960.627 kb on + strand at 960.627 kb on + strand at 960.628 kb on - strand at 960.628 kb on - strand at 960.628 kb on - strand at 960.628 kb on - strand at 961.095 kb on - strand, within ABZR86_RS04280 at 961.095 kb on - strand, within ABZR86_RS04280 at 961.388 kb on + strand, within ABZR86_RS04280 at 961.389 kb on - strand, within ABZR86_RS04280 at 961.417 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.678 kb on + strand, within ABZR86_RS04280 at 961.679 kb on - strand, within ABZR86_RS04280 at 961.679 kb on - strand, within ABZR86_RS04280 at 961.679 kb on - strand, within ABZR86_RS04280 at 961.680 kb on + strand, within ABZR86_RS04280 at 961.680 kb on + strand, within ABZR86_RS04280 at 961.930 kb on + strand, within ABZR86_RS04280 at 961.930 kb on + strand, within ABZR86_RS04280 at 961.930 kb on + strand, within ABZR86_RS04280 at 961.931 kb on - strand, within ABZR86_RS04280 at 962.108 kb on + strand, within ABZR86_RS04280 at 962.108 kb on + strand, within ABZR86_RS04280 at 962.109 kb on - strand, within ABZR86_RS04280 at 962.109 kb on - strand, within ABZR86_RS04280 at 962.109 kb on - strand, within ABZR86_RS04280 at 962.109 kb on - strand, within ABZR86_RS04280 at 962.682 kb on + strand, within ABZR86_RS04280 at 962.893 kb on + strand, within ABZR86_RS04280 at 962.893 kb on + strand, within ABZR86_RS04280 at 962.893 kb on + strand, within ABZR86_RS04280 at 962.894 kb on - strand, within ABZR86_RS04280 at 962.894 kb on - strand, within ABZR86_RS04280 at 962.894 kb on - strand, within ABZR86_RS04280 at 962.894 kb on - strand, within ABZR86_RS04280 at 962.894 kb on - strand, within ABZR86_RS04280 at 963.080 kb on + strand at 963.080 kb on + strand at 963.080 kb on + strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.084 kb on + strand at 963.085 kb on - strand at 963.564 kb on + strand, within ABZR86_RS04285 at 963.565 kb on - strand, within ABZR86_RS04285 at 963.633 kb on + strand, within ABZR86_RS04285 at 963.633 kb on + strand, within ABZR86_RS04285 at 963.633 kb on + strand, within ABZR86_RS04285 at 963.634 kb on - strand, within ABZR86_RS04285 at 963.634 kb on - strand, within ABZR86_RS04285 at 963.634 kb on - strand, within ABZR86_RS04285 at 963.697 kb on - strand, within ABZR86_RS04285 at 963.759 kb on + strand, within ABZR86_RS04285 at 963.852 kb on + strand, within ABZR86_RS04285 at 963.852 kb on + strand, within ABZR86_RS04285 at 963.853 kb on - strand, within ABZR86_RS04285 at 964.057 kb on + strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.086 kb on + strand at 964.086 kb on + strand at 964.086 kb on + strand at 964.087 kb on - strand at 964.087 kb on - strand at 964.237 kb on + strand, within ABZR86_RS04290 at 964.238 kb on - strand, within ABZR86_RS04290 at 964.238 kb on - strand, within ABZR86_RS04290 at 964.238 kb on - strand, within ABZR86_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 959,794 + -1.3 959,794 + -0.4 959,794 + -0.2 959,794 + +0.6 959,794 + +0.1 959,794 + -0.3 959,794 + +1.4 959,794 + -0.6 959,794 + -0.8 959,794 + -0.1 959,795 - +0.9 959,795 - +0.0 959,795 - +0.1 959,795 - +0.5 959,795 - +0.9 959,795 - +0.3 959,795 - +0.8 959,795 - +0.2 959,795 - +0.2 959,875 + ABZR86_RS04270 0.18 -0.5 959,875 + ABZR86_RS04270 0.18 +0.4 959,875 + ABZR86_RS04270 0.18 -0.5 959,875 + ABZR86_RS04270 0.18 +0.0 959,876 - ABZR86_RS04270 0.18 -1.1 959,876 - ABZR86_RS04270 0.18 +2.9 959,876 - ABZR86_RS04270 0.18 -0.1 959,920 - ABZR86_RS04270 0.28 +0.4 959,930 + ABZR86_RS04270 0.30 -0.1 959,931 - ABZR86_RS04270 0.30 +0.3 959,971 - ABZR86_RS04270 0.39 -0.9 959,971 - ABZR86_RS04270 0.39 +0.1 959,971 - ABZR86_RS04270 0.39 -0.6 959,971 - ABZR86_RS04270 0.39 -0.3 960,096 + ABZR86_RS04270 0.68 -0.1 960,096 + ABZR86_RS04270 0.68 -0.3 960,097 - ABZR86_RS04270 0.68 -0.9 960,097 - ABZR86_RS04270 0.68 -0.0 960,097 - ABZR86_RS04270 0.68 -0.6 960,097 - ABZR86_RS04270 0.68 -0.0 960,097 - ABZR86_RS04270 0.68 -0.7 960,097 - ABZR86_RS04270 0.68 +1.7 960,097 - ABZR86_RS04270 0.68 -0.2 960,154 + ABZR86_RS04270 0.81 +0.8 960,154 + ABZR86_RS04270 0.81 -0.4 960,154 + ABZR86_RS04270 0.81 -1.0 960,155 - ABZR86_RS04270 0.82 -2.3 960,155 - ABZR86_RS04270 0.82 +0.9 960,155 - ABZR86_RS04270 0.82 +0.1 960,155 - ABZR86_RS04270 0.82 +0.9 960,202 + -0.2 960,203 - -0.1 960,522 - ABZR86_RS04275 0.67 -2.5 960,568 + ABZR86_RS04275 0.78 +0.7 960,602 + ABZR86_RS04275 0.86 -1.6 960,602 + ABZR86_RS04275 0.86 -2.3 960,603 - ABZR86_RS04275 0.87 -0.4 960,603 - ABZR86_RS04275 0.87 -0.4 960,603 - ABZR86_RS04275 0.87 -0.7 960,623 + -0.3 960,623 + -1.0 960,624 - +1.4 960,624 - -0.1 960,624 - +0.0 960,624 - -0.6 960,624 - -0.1 960,624 - -1.0 960,624 - -0.3 960,624 - +0.7 960,624 - +0.2 960,627 + +0.1 960,627 + -0.6 960,627 + +0.8 960,627 + -2.3 960,627 + +0.1 960,627 + -0.2 960,628 - -0.7 960,628 - -0.3 960,628 - +0.4 960,628 - -0.7 961,095 - ABZR86_RS04280 0.14 +0.1 961,095 - ABZR86_RS04280 0.14 -0.5 961,388 + ABZR86_RS04280 0.26 +0.0 961,389 - ABZR86_RS04280 0.26 -0.0 961,417 + ABZR86_RS04280 0.27 -0.2 961,678 + ABZR86_RS04280 0.37 +0.4 961,678 + ABZR86_RS04280 0.37 +0.7 961,678 + ABZR86_RS04280 0.37 +0.3 961,678 + ABZR86_RS04280 0.37 +0.1 961,678 + ABZR86_RS04280 0.37 +0.5 961,678 + ABZR86_RS04280 0.37 -2.3 961,679 - ABZR86_RS04280 0.37 -0.5 961,679 - ABZR86_RS04280 0.37 -3.1 961,679 - ABZR86_RS04280 0.37 -0.2 961,680 + ABZR86_RS04280 0.37 -1.2 961,680 + ABZR86_RS04280 0.37 -0.7 961,930 + ABZR86_RS04280 0.47 +0.1 961,930 + ABZR86_RS04280 0.47 -0.2 961,930 + ABZR86_RS04280 0.47 +0.4 961,931 - ABZR86_RS04280 0.47 +0.3 962,108 + ABZR86_RS04280 0.54 -0.5 962,108 + ABZR86_RS04280 0.54 -0.6 962,109 - ABZR86_RS04280 0.54 -1.6 962,109 - ABZR86_RS04280 0.54 -0.5 962,109 - ABZR86_RS04280 0.54 -0.7 962,109 - ABZR86_RS04280 0.54 -0.1 962,682 + ABZR86_RS04280 0.77 +0.4 962,893 + ABZR86_RS04280 0.85 -0.2 962,893 + ABZR86_RS04280 0.85 +0.5 962,893 + ABZR86_RS04280 0.85 +0.2 962,894 - ABZR86_RS04280 0.85 -0.0 962,894 - ABZR86_RS04280 0.85 -0.3 962,894 - ABZR86_RS04280 0.85 +0.2 962,894 - ABZR86_RS04280 0.85 +0.2 962,894 - ABZR86_RS04280 0.85 +0.1 963,080 + -0.0 963,080 + +0.7 963,080 + +0.5 963,081 - +0.6 963,081 - -0.9 963,081 - -0.5 963,081 - +0.9 963,081 - -0.3 963,081 - -0.9 963,081 - -0.9 963,081 - +0.3 963,084 + +0.8 963,085 - -0.9 963,564 + ABZR86_RS04285 0.38 +0.7 963,565 - ABZR86_RS04285 0.38 -0.6 963,633 + ABZR86_RS04285 0.46 +0.6 963,633 + ABZR86_RS04285 0.46 -1.9 963,633 + ABZR86_RS04285 0.46 -0.9 963,634 - ABZR86_RS04285 0.46 +0.0 963,634 - ABZR86_RS04285 0.46 +0.6 963,634 - ABZR86_RS04285 0.46 -0.3 963,697 - ABZR86_RS04285 0.54 -0.6 963,759 + ABZR86_RS04285 0.62 -0.5 963,852 + ABZR86_RS04285 0.73 +0.5 963,852 + ABZR86_RS04285 0.73 +0.4 963,853 - ABZR86_RS04285 0.73 +0.6 964,057 + -0.0 964,057 + +0.2 964,057 + -0.2 964,057 + -1.0 964,057 + +0.4 964,057 + -0.3 964,086 + +0.1 964,086 + +0.2 964,086 + +0.4 964,087 - -0.1 964,087 - +0.1 964,237 + ABZR86_RS04290 0.24 +0.1 964,238 - ABZR86_RS04290 0.24 -0.1 964,238 - ABZR86_RS04290 0.24 -0.2 964,238 - ABZR86_RS04290 0.24 -0.8
Or see this region's nucleotide sequence