Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04030 and ABZR86_RS04035 are separated by 80 nucleotides ABZR86_RS04035 and ABZR86_RS04040 are separated by 228 nucleotides ABZR86_RS04040 and ABZR86_RS04045 are separated by 60 nucleotides
ABZR86_RS04030: ABZR86_RS04030 - SDR family oxidoreductase, at 887,648 to 888,430
_RS04030
ABZR86_RS04035: ABZR86_RS04035 - LysR substrate-binding domain-containing protein, at 888,511 to 889,425
_RS04035
ABZR86_RS04040: ABZR86_RS04040 - heme-binding protein, at 889,654 to 890,184
_RS04040
ABZR86_RS04045: ABZR86_RS04045 - sialidase family protein, at 890,245 to 891,276
_RS04045
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.611 kb on + strand at 887.612 kb on - strand at 887.612 kb on - strand at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.893 kb on - strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 888.105 kb on + strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.380 kb on + strand at 888.380 kb on + strand at 888.381 kb on - strand at 888.383 kb on - strand at 888.428 kb on + strand at 888.429 kb on - strand at 888.429 kb on - strand at 888.839 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 889.032 kb on + strand, within ABZR86_RS04035 at 889.232 kb on + strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.458 kb on + strand at 889.459 kb on - strand at 889.459 kb on - strand at 889.459 kb on - strand at 889.461 kb on - strand at 889.461 kb on - strand at 889.541 kb on + strand at 889.542 kb on - strand at 889.542 kb on - strand at 889.542 kb on - strand at 889.545 kb on + strand at 889.608 kb on - strand at 889.750 kb on + strand, within ABZR86_RS04040 at 889.893 kb on - strand, within ABZR86_RS04040 at 889.924 kb on + strand, within ABZR86_RS04040 at 889.925 kb on - strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 890.058 kb on + strand, within ABZR86_RS04040 at 890.059 kb on - strand, within ABZR86_RS04040 at 890.135 kb on + strand at 890.135 kb on + strand at 890.135 kb on + strand at 890.135 kb on + strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.179 kb on + strand at 890.180 kb on - strand at 890.182 kb on + strand at 890.182 kb on + strand at 890.183 kb on - strand at 890.183 kb on - strand at 890.187 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.292 kb on + strand at 890.292 kb on + strand at 890.293 kb on - strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.320 kb on - strand at 890.321 kb on + strand at 890.321 kb on + strand at 890.322 kb on - strand at 890.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 887,611 + +0.4 887,612 - -0.3 887,612 - -1.3 887,892 + ABZR86_RS04030 0.31 -0.2 887,892 + ABZR86_RS04030 0.31 -0.0 887,892 + ABZR86_RS04030 0.31 -1.0 887,893 - ABZR86_RS04030 0.31 -0.1 887,987 + ABZR86_RS04030 0.43 -0.7 887,987 + ABZR86_RS04030 0.43 -0.1 887,987 + ABZR86_RS04030 0.43 +0.3 887,987 + ABZR86_RS04030 0.43 -0.0 887,988 - ABZR86_RS04030 0.43 +0.2 887,988 - ABZR86_RS04030 0.43 +0.1 888,105 + ABZR86_RS04030 0.58 -0.2 888,243 - ABZR86_RS04030 0.76 -0.1 888,243 - ABZR86_RS04030 0.76 -1.3 888,380 + -0.2 888,380 + +0.8 888,381 - -1.8 888,383 - +0.4 888,428 + +0.2 888,429 - +1.5 888,429 - +0.6 888,839 + ABZR86_RS04035 0.36 +0.6 888,856 + ABZR86_RS04035 0.38 -0.4 888,856 + ABZR86_RS04035 0.38 +0.1 888,856 + ABZR86_RS04035 0.38 +0.3 888,856 + ABZR86_RS04035 0.38 -0.1 888,856 + ABZR86_RS04035 0.38 +0.1 888,857 - ABZR86_RS04035 0.38 +1.0 888,857 - ABZR86_RS04035 0.38 -0.5 889,032 + ABZR86_RS04035 0.57 +0.0 889,232 + ABZR86_RS04035 0.79 -0.5 889,233 - ABZR86_RS04035 0.79 +0.8 889,233 - ABZR86_RS04035 0.79 +1.7 889,233 - ABZR86_RS04035 0.79 +0.2 889,458 + -0.5 889,459 - +0.4 889,459 - +0.1 889,459 - -0.6 889,461 - +1.0 889,461 - +0.2 889,541 + +0.4 889,542 - -0.4 889,542 - -0.6 889,542 - -1.1 889,545 + -0.3 889,608 - +1.4 889,750 + ABZR86_RS04040 0.18 +0.3 889,893 - ABZR86_RS04040 0.45 +0.7 889,924 + ABZR86_RS04040 0.51 -1.3 889,925 - ABZR86_RS04040 0.51 +0.1 889,996 + ABZR86_RS04040 0.64 +0.1 889,996 + ABZR86_RS04040 0.64 +0.5 889,996 + ABZR86_RS04040 0.64 -0.8 890,058 + ABZR86_RS04040 0.76 +1.9 890,059 - ABZR86_RS04040 0.76 -0.8 890,135 + +0.7 890,135 + +0.7 890,135 + +0.1 890,135 + +0.4 890,136 - +0.5 890,136 - +0.5 890,136 - +0.1 890,136 - +0.8 890,179 + -0.3 890,180 - -0.2 890,182 + +0.9 890,182 + -0.1 890,183 - +2.0 890,183 - +0.4 890,187 - +0.4 890,190 - -2.4 890,190 - -0.4 890,190 - -0.2 890,190 - -0.8 890,292 + +0.0 890,292 + +0.2 890,293 - -1.0 890,319 + -3.0 890,319 + -0.2 890,319 + +0.4 890,319 + +0.2 890,319 + +0.4 890,320 - +0.1 890,321 + -0.4 890,321 + +0.1 890,322 - +1.7 890,322 - -0.7
Or see this region's nucleotide sequence