Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03055

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03050 and ABZR86_RS03055 are separated by 120 nucleotidesABZR86_RS03055 and ABZR86_RS03060 are separated by 50 nucleotides ABZR86_RS03050: ABZR86_RS03050 - excinuclease ABC subunit UvrA, at 621,627 to 624,035 _RS03050 ABZR86_RS03055: ABZR86_RS03055 - VOC family protein, at 624,156 to 624,566 _RS03055 ABZR86_RS03060: ABZR86_RS03060 - helix-turn-helix transcriptional regulator, at 624,617 to 625,066 _RS03060 Position (kb) 624 625Strain fitness (log2 ratio) -3 -2 -1 0 1at 623.272 kb on + strand, within ABZR86_RS03050at 623.273 kb on - strand, within ABZR86_RS03050at 623.273 kb on - strand, within ABZR86_RS03050at 623.273 kb on - strand, within ABZR86_RS03050at 623.317 kb on + strand, within ABZR86_RS03050at 623.317 kb on + strand, within ABZR86_RS03050at 623.318 kb on - strand, within ABZR86_RS03050at 623.423 kb on - strand, within ABZR86_RS03050at 623.470 kb on + strand, within ABZR86_RS03050at 623.470 kb on + strand, within ABZR86_RS03050at 623.471 kb on - strand, within ABZR86_RS03050at 623.471 kb on - strand, within ABZR86_RS03050at 623.648 kb on + strand, within ABZR86_RS03050at 623.836 kb on + strandat 623.836 kb on + strandat 623.836 kb on + strandat 623.836 kb on + strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 623.837 kb on - strandat 624.056 kb on + strandat 624.056 kb on + strandat 624.057 kb on - strandat 624.057 kb on - strandat 624.057 kb on - strandat 624.057 kb on - strandat 624.138 kb on + strandat 624.139 kb on - strandat 624.139 kb on - strandat 624.139 kb on - strandat 624.397 kb on + strand, within ABZR86_RS03055at 624.624 kb on - strandat 624.879 kb on + strand, within ABZR86_RS03060at 624.880 kb on - strand, within ABZR86_RS03060at 624.880 kb on - strand, within ABZR86_RS03060at 624.880 kb on - strand, within ABZR86_RS03060at 624.984 kb on + strand, within ABZR86_RS03060at 625.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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623,272 + ABZR86_RS03050 0.68 +0.7
623,273 - ABZR86_RS03050 0.68 +0.4
623,273 - ABZR86_RS03050 0.68 -0.9
623,273 - ABZR86_RS03050 0.68 -0.3
623,317 + ABZR86_RS03050 0.70 +1.3
623,317 + ABZR86_RS03050 0.70 -0.1
623,318 - ABZR86_RS03050 0.70 +0.7
623,423 - ABZR86_RS03050 0.75 -0.3
623,470 + ABZR86_RS03050 0.77 +0.0
623,470 + ABZR86_RS03050 0.77 +0.5
623,471 - ABZR86_RS03050 0.77 -0.0
623,471 - ABZR86_RS03050 0.77 +1.4
623,648 + ABZR86_RS03050 0.84 +0.3
623,836 + +0.4
623,836 + -2.6
623,836 + +0.2
623,836 + -1.4
623,837 - -2.9
623,837 - +0.5
623,837 - +0.7
623,837 - -0.5
624,056 + +0.5
624,056 + -0.5
624,057 - +1.3
624,057 - +0.7
624,057 - -0.6
624,057 - -0.8
624,138 + -0.0
624,139 - -0.9
624,139 - +0.7
624,139 - -2.0
624,397 + ABZR86_RS03055 0.59 -0.2
624,624 - +0.7
624,879 + ABZR86_RS03060 0.58 +0.5
624,880 - ABZR86_RS03060 0.58 +0.5
624,880 - ABZR86_RS03060 0.58 -1.9
624,880 - ABZR86_RS03060 0.58 -0.5
624,984 + ABZR86_RS03060 0.82 +0.5
625,175 - -0.1

Or see this region's nucleotide sequence