Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01515 and ABZR86_RS01520 are separated by 736 nucleotides ABZR86_RS01520 and ABZR86_RS01525 are separated by 166 nucleotides
ABZR86_RS01515: ABZR86_RS01515 - hypothetical protein, at 329,404 to 330,375
_RS01515
ABZR86_RS01520: ABZR86_RS01520 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 331,112 to 332,626
_RS01520
ABZR86_RS01525: ABZR86_RS01525 - ATP-binding protein, at 332,793 to 334,202
_RS01525
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1
2 at 330.128 kb on + strand, within ABZR86_RS01515 at 330.129 kb on - strand, within ABZR86_RS01515 at 330.205 kb on - strand, within ABZR86_RS01515 at 330.205 kb on - strand, within ABZR86_RS01515 at 330.317 kb on + strand at 330.449 kb on + strand at 330.449 kb on + strand at 330.449 kb on + strand at 330.450 kb on - strand at 330.450 kb on - strand at 330.450 kb on - strand at 330.450 kb on - strand at 330.450 kb on - strand at 330.522 kb on + strand at 330.522 kb on + strand at 330.522 kb on + strand at 330.523 kb on - strand at 330.679 kb on + strand at 330.679 kb on + strand at 330.679 kb on + strand at 330.726 kb on - strand at 330.798 kb on + strand at 330.798 kb on + strand at 330.798 kb on + strand at 330.799 kb on - strand at 330.823 kb on - strand at 330.823 kb on - strand at 330.823 kb on - strand at 330.836 kb on + strand at 330.885 kb on - strand at 330.916 kb on + strand at 330.916 kb on + strand at 330.916 kb on + strand at 330.917 kb on - strand at 330.917 kb on - strand at 330.917 kb on - strand at 330.917 kb on - strand at 330.945 kb on - strand at 330.971 kb on + strand at 330.971 kb on + strand at 330.972 kb on - strand at 331.165 kb on - strand at 331.367 kb on + strand, within ABZR86_RS01520 at 331.368 kb on - strand, within ABZR86_RS01520 at 331.368 kb on - strand, within ABZR86_RS01520 at 331.433 kb on + strand, within ABZR86_RS01520 at 331.433 kb on + strand, within ABZR86_RS01520 at 331.433 kb on + strand, within ABZR86_RS01520 at 331.433 kb on + strand, within ABZR86_RS01520 at 331.434 kb on - strand, within ABZR86_RS01520 at 331.434 kb on - strand, within ABZR86_RS01520 at 331.514 kb on + strand, within ABZR86_RS01520 at 331.515 kb on - strand, within ABZR86_RS01520 at 331.690 kb on + strand, within ABZR86_RS01520 at 331.703 kb on + strand, within ABZR86_RS01520 at 331.704 kb on - strand, within ABZR86_RS01520 at 331.704 kb on - strand, within ABZR86_RS01520 at 331.706 kb on + strand, within ABZR86_RS01520 at 331.707 kb on - strand, within ABZR86_RS01520 at 331.728 kb on - strand, within ABZR86_RS01520 at 331.862 kb on + strand, within ABZR86_RS01520 at 331.865 kb on + strand, within ABZR86_RS01520 at 331.865 kb on + strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 332.000 kb on + strand, within ABZR86_RS01520 at 332.000 kb on + strand, within ABZR86_RS01520 at 332.243 kb on + strand, within ABZR86_RS01520 at 332.244 kb on - strand, within ABZR86_RS01520 at 332.261 kb on + strand, within ABZR86_RS01520 at 332.262 kb on - strand, within ABZR86_RS01520 at 332.682 kb on + strand at 332.978 kb on - strand, within ABZR86_RS01525 at 333.594 kb on - strand, within ABZR86_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 330,128 + ABZR86_RS01515 0.74 +0.9 330,129 - ABZR86_RS01515 0.75 +0.4 330,205 - ABZR86_RS01515 0.82 +0.8 330,205 - ABZR86_RS01515 0.82 +0.2 330,317 + -0.8 330,449 + -0.3 330,449 + +0.3 330,449 + -1.6 330,450 - -0.7 330,450 - +0.8 330,450 - -0.7 330,450 - -0.1 330,450 - +1.7 330,522 + -0.4 330,522 + -0.0 330,522 + -0.9 330,523 - +1.0 330,679 + -0.9 330,679 + -0.2 330,679 + -0.2 330,726 - -0.2 330,798 + +0.7 330,798 + -0.2 330,798 + -0.6 330,799 - +0.6 330,823 - -0.2 330,823 - -0.3 330,823 - +0.4 330,836 + +0.3 330,885 - +0.7 330,916 + +0.0 330,916 + +0.5 330,916 + -0.0 330,917 - +0.6 330,917 - +0.5 330,917 - +1.4 330,917 - +0.1 330,945 - +0.4 330,971 + +0.0 330,971 + +0.5 330,972 - +0.1 331,165 - +0.4 331,367 + ABZR86_RS01520 0.17 +0.0 331,368 - ABZR86_RS01520 0.17 +1.2 331,368 - ABZR86_RS01520 0.17 -0.1 331,433 + ABZR86_RS01520 0.21 -1.6 331,433 + ABZR86_RS01520 0.21 +0.5 331,433 + ABZR86_RS01520 0.21 -0.1 331,433 + ABZR86_RS01520 0.21 -1.2 331,434 - ABZR86_RS01520 0.21 -1.4 331,434 - ABZR86_RS01520 0.21 +0.1 331,514 + ABZR86_RS01520 0.27 +1.0 331,515 - ABZR86_RS01520 0.27 -0.8 331,690 + ABZR86_RS01520 0.38 -1.6 331,703 + ABZR86_RS01520 0.39 -1.4 331,704 - ABZR86_RS01520 0.39 +0.3 331,704 - ABZR86_RS01520 0.39 +0.5 331,706 + ABZR86_RS01520 0.39 -0.3 331,707 - ABZR86_RS01520 0.39 +0.0 331,728 - ABZR86_RS01520 0.41 -0.0 331,862 + ABZR86_RS01520 0.50 -0.6 331,865 + ABZR86_RS01520 0.50 -0.2 331,865 + ABZR86_RS01520 0.50 +0.4 331,866 - ABZR86_RS01520 0.50 +0.2 331,866 - ABZR86_RS01520 0.50 +0.7 331,866 - ABZR86_RS01520 0.50 -0.2 331,866 - ABZR86_RS01520 0.50 +0.5 332,000 + ABZR86_RS01520 0.59 -0.1 332,000 + ABZR86_RS01520 0.59 -0.6 332,243 + ABZR86_RS01520 0.75 -1.1 332,244 - ABZR86_RS01520 0.75 +0.1 332,261 + ABZR86_RS01520 0.76 +2.2 332,262 - ABZR86_RS01520 0.76 -0.7 332,682 + -0.5 332,978 - ABZR86_RS01525 0.13 -0.5 333,594 - ABZR86_RS01525 0.57 +0.3
Or see this region's nucleotide sequence