Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00740 and ABZR86_RS00745 are separated by 112 nucleotides ABZR86_RS00745 and ABZR86_RS00750 are separated by 40 nucleotides ABZR86_RS00750 and ABZR86_RS00755 are separated by 61 nucleotides
ABZR86_RS00740: ABZR86_RS00740 - isocitrate dehydrogenase, at 146,145 to 147,161
_RS00740
ABZR86_RS00745: ABZR86_RS00745 - carboxymuconolactone decarboxylase family protein, at 147,274 to 147,732
_RS00745
ABZR86_RS00750: ABZR86_RS00750 - RNA polymerase sigma factor SigJ, at 147,773 to 148,672
_RS00750
ABZR86_RS00755: ABZR86_RS00755 - aspartyl/asparaginyl beta-hydroxylase domain-containing protein, at 148,734 to 149,678
_RS00755
Position (kb) 147
148
149 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 147.296 kb on + strand at 147.312 kb on + strand at 147.313 kb on - strand at 147.413 kb on + strand, within ABZR86_RS00745 at 147.413 kb on + strand, within ABZR86_RS00745 at 147.413 kb on + strand, within ABZR86_RS00745 at 147.414 kb on - strand, within ABZR86_RS00745 at 147.497 kb on + strand, within ABZR86_RS00745 at 147.497 kb on + strand, within ABZR86_RS00745 at 147.497 kb on + strand, within ABZR86_RS00745 at 147.498 kb on - strand, within ABZR86_RS00745 at 147.498 kb on - strand, within ABZR86_RS00745 at 147.498 kb on - strand, within ABZR86_RS00745 at 147.590 kb on + strand, within ABZR86_RS00745 at 147.590 kb on + strand, within ABZR86_RS00745 at 147.591 kb on - strand, within ABZR86_RS00745 at 147.591 kb on - strand, within ABZR86_RS00745 at 147.591 kb on - strand, within ABZR86_RS00745 at 147.591 kb on - strand, within ABZR86_RS00745 at 147.979 kb on + strand, within ABZR86_RS00750 at 147.979 kb on + strand, within ABZR86_RS00750 at 147.979 kb on + strand, within ABZR86_RS00750 at 148.284 kb on + strand, within ABZR86_RS00750 at 148.284 kb on + strand, within ABZR86_RS00750 at 148.285 kb on - strand, within ABZR86_RS00750 at 148.285 kb on - strand, within ABZR86_RS00750 at 148.285 kb on - strand, within ABZR86_RS00750 at 148.443 kb on + strand, within ABZR86_RS00750 at 148.444 kb on - strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.577 kb on + strand, within ABZR86_RS00750 at 148.578 kb on - strand, within ABZR86_RS00750 at 148.578 kb on - strand, within ABZR86_RS00750 at 148.578 kb on - strand, within ABZR86_RS00750 at 148.578 kb on - strand, within ABZR86_RS00750 at 148.614 kb on + strand at 148.615 kb on - strand at 148.751 kb on - strand at 148.795 kb on + strand at 148.795 kb on + strand at 148.796 kb on - strand at 148.796 kb on - strand at 148.796 kb on - strand at 148.796 kb on - strand at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.059 kb on + strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.060 kb on - strand, within ABZR86_RS00755 at 149.164 kb on + strand, within ABZR86_RS00755 at 149.165 kb on - strand, within ABZR86_RS00755 at 149.317 kb on + strand, within ABZR86_RS00755 at 149.318 kb on - strand, within ABZR86_RS00755 at 149.329 kb on + strand, within ABZR86_RS00755 at 149.330 kb on - strand, within ABZR86_RS00755 at 149.524 kb on + strand, within ABZR86_RS00755 at 149.524 kb on + strand, within ABZR86_RS00755 at 149.524 kb on + strand, within ABZR86_RS00755 at 149.524 kb on + strand, within ABZR86_RS00755 at 149.524 kb on + strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.525 kb on - strand, within ABZR86_RS00755 at 149.539 kb on + strand, within ABZR86_RS00755 at 149.539 kb on + strand, within ABZR86_RS00755 at 149.539 kb on + strand, within ABZR86_RS00755 at 149.540 kb on - strand, within ABZR86_RS00755 at 149.540 kb on - strand, within ABZR86_RS00755 at 149.540 kb on - strand, within ABZR86_RS00755 at 149.625 kb on + strand at 149.625 kb on + strand at 149.626 kb on - strand at 149.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 147,296 + -0.2 147,312 + +0.6 147,313 - +0.1 147,413 + ABZR86_RS00745 0.30 -1.4 147,413 + ABZR86_RS00745 0.30 -0.4 147,413 + ABZR86_RS00745 0.30 +0.4 147,414 - ABZR86_RS00745 0.31 -0.6 147,497 + ABZR86_RS00745 0.49 -0.8 147,497 + ABZR86_RS00745 0.49 -0.7 147,497 + ABZR86_RS00745 0.49 +1.1 147,498 - ABZR86_RS00745 0.49 -0.6 147,498 - ABZR86_RS00745 0.49 -0.9 147,498 - ABZR86_RS00745 0.49 -0.6 147,590 + ABZR86_RS00745 0.69 -0.6 147,590 + ABZR86_RS00745 0.69 +0.2 147,591 - ABZR86_RS00745 0.69 +0.1 147,591 - ABZR86_RS00745 0.69 -0.0 147,591 - ABZR86_RS00745 0.69 +0.1 147,591 - ABZR86_RS00745 0.69 -0.0 147,979 + ABZR86_RS00750 0.23 -3.9 147,979 + ABZR86_RS00750 0.23 +0.7 147,979 + ABZR86_RS00750 0.23 -1.2 148,284 + ABZR86_RS00750 0.57 -0.6 148,284 + ABZR86_RS00750 0.57 -0.5 148,285 - ABZR86_RS00750 0.57 +1.3 148,285 - ABZR86_RS00750 0.57 +0.2 148,285 - ABZR86_RS00750 0.57 -0.3 148,443 + ABZR86_RS00750 0.74 -0.1 148,444 - ABZR86_RS00750 0.75 -0.6 148,577 + ABZR86_RS00750 0.89 -0.3 148,577 + ABZR86_RS00750 0.89 -0.3 148,577 + ABZR86_RS00750 0.89 +0.2 148,577 + ABZR86_RS00750 0.89 +2.7 148,577 + ABZR86_RS00750 0.89 -2.0 148,577 + ABZR86_RS00750 0.89 -0.9 148,577 + ABZR86_RS00750 0.89 +0.9 148,578 - ABZR86_RS00750 0.89 -0.8 148,578 - ABZR86_RS00750 0.89 +0.2 148,578 - ABZR86_RS00750 0.89 -0.0 148,578 - ABZR86_RS00750 0.89 +0.1 148,614 + -0.3 148,615 - +0.3 148,751 - +0.0 148,795 + +1.9 148,795 + +0.5 148,796 - +0.7 148,796 - -1.3 148,796 - -0.9 148,796 - -0.1 149,059 + ABZR86_RS00755 0.34 +0.7 149,059 + ABZR86_RS00755 0.34 +1.3 149,059 + ABZR86_RS00755 0.34 +0.0 149,059 + ABZR86_RS00755 0.34 -0.2 149,059 + ABZR86_RS00755 0.34 -0.3 149,059 + ABZR86_RS00755 0.34 -0.0 149,059 + ABZR86_RS00755 0.34 -1.2 149,059 + ABZR86_RS00755 0.34 +0.7 149,059 + ABZR86_RS00755 0.34 -0.4 149,059 + ABZR86_RS00755 0.34 +1.1 149,059 + ABZR86_RS00755 0.34 -0.1 149,059 + ABZR86_RS00755 0.34 +0.1 149,059 + ABZR86_RS00755 0.34 -0.2 149,059 + ABZR86_RS00755 0.34 -0.4 149,059 + ABZR86_RS00755 0.34 -1.3 149,059 + ABZR86_RS00755 0.34 +0.4 149,060 - ABZR86_RS00755 0.34 -1.3 149,060 - ABZR86_RS00755 0.34 -0.1 149,060 - ABZR86_RS00755 0.34 +0.5 149,060 - ABZR86_RS00755 0.34 +1.4 149,060 - ABZR86_RS00755 0.34 +1.9 149,060 - ABZR86_RS00755 0.34 -0.2 149,060 - ABZR86_RS00755 0.34 +0.1 149,060 - ABZR86_RS00755 0.34 -0.1 149,060 - ABZR86_RS00755 0.34 -0.3 149,164 + ABZR86_RS00755 0.46 +0.1 149,165 - ABZR86_RS00755 0.46 +0.4 149,317 + ABZR86_RS00755 0.62 -0.1 149,318 - ABZR86_RS00755 0.62 -1.0 149,329 + ABZR86_RS00755 0.63 -0.8 149,330 - ABZR86_RS00755 0.63 -0.7 149,524 + ABZR86_RS00755 0.84 +0.3 149,524 + ABZR86_RS00755 0.84 -1.1 149,524 + ABZR86_RS00755 0.84 -1.2 149,524 + ABZR86_RS00755 0.84 +0.5 149,524 + ABZR86_RS00755 0.84 -0.8 149,525 - ABZR86_RS00755 0.84 -0.5 149,525 - ABZR86_RS00755 0.84 -0.8 149,525 - ABZR86_RS00755 0.84 +0.9 149,525 - ABZR86_RS00755 0.84 +0.3 149,525 - ABZR86_RS00755 0.84 +0.1 149,525 - ABZR86_RS00755 0.84 +0.3 149,525 - ABZR86_RS00755 0.84 -0.0 149,525 - ABZR86_RS00755 0.84 -0.2 149,525 - ABZR86_RS00755 0.84 -0.2 149,539 + ABZR86_RS00755 0.85 -0.7 149,539 + ABZR86_RS00755 0.85 -0.5 149,539 + ABZR86_RS00755 0.85 +1.7 149,540 - ABZR86_RS00755 0.85 -2.6 149,540 - ABZR86_RS00755 0.85 -0.4 149,540 - ABZR86_RS00755 0.85 +0.2 149,625 + +0.1 149,625 + +0.8 149,626 - +1.1 149,626 - -0.7
Or see this region's nucleotide sequence