Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02253 and CCNA_03965 are separated by 55 nucleotides CCNA_03965 and CCNA_02254 are separated by 108 nucleotides
CCNA_02253: CCNA_02253 - hybrid CAP effector domain/patatin phospholipase protein, at 2,402,492 to 2,404,267
_02253
CCNA_03965: CCNA_03965 - hypothetical protein, at 2,404,323 to 2,404,409
_03965
CCNA_02254: CCNA_02254 - isovaleryl-CoA dehydrogenase, at 2,404,518 to 2,405,678
_02254
Position (kb)
2404
2405 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2403.398 kb on - strand, within CCNA_02253 at 2403.398 kb on - strand, within CCNA_02253 at 2403.448 kb on - strand, within CCNA_02253 at 2403.497 kb on + strand, within CCNA_02253 at 2403.534 kb on - strand, within CCNA_02253 at 2403.534 kb on - strand, within CCNA_02253 at 2403.577 kb on + strand, within CCNA_02253 at 2403.577 kb on + strand, within CCNA_02253 at 2403.642 kb on - strand, within CCNA_02253 at 2403.668 kb on + strand, within CCNA_02253 at 2403.676 kb on - strand, within CCNA_02253 at 2403.681 kb on - strand, within CCNA_02253 at 2403.731 kb on + strand, within CCNA_02253 at 2403.757 kb on + strand, within CCNA_02253 at 2403.764 kb on + strand, within CCNA_02253 at 2403.765 kb on - strand, within CCNA_02253 at 2403.817 kb on + strand, within CCNA_02253 at 2403.817 kb on + strand, within CCNA_02253 at 2403.818 kb on + strand, within CCNA_02253 at 2403.826 kb on - strand, within CCNA_02253 at 2403.891 kb on - strand, within CCNA_02253 at 2403.924 kb on + strand, within CCNA_02253 at 2403.956 kb on + strand, within CCNA_02253 at 2403.969 kb on - strand, within CCNA_02253 at 2403.988 kb on + strand, within CCNA_02253 at 2404.013 kb on + strand, within CCNA_02253 at 2404.041 kb on - strand, within CCNA_02253 at 2404.079 kb on + strand, within CCNA_02253 at 2404.079 kb on + strand, within CCNA_02253 at 2404.097 kb on - strand at 2404.173 kb on + strand at 2404.182 kb on + strand at 2404.187 kb on - strand at 2404.197 kb on + strand at 2404.243 kb on + strand at 2404.255 kb on - strand at 2404.270 kb on + strand at 2404.317 kb on - strand at 2404.322 kb on + strand at 2404.322 kb on + strand at 2404.343 kb on + strand, within CCNA_03965 at 2404.343 kb on + strand, within CCNA_03965 at 2404.518 kb on - strand at 2404.518 kb on - strand at 2404.518 kb on - strand at 2404.590 kb on - strand at 2404.629 kb on + strand at 2404.658 kb on - strand, within CCNA_02254 at 2404.659 kb on - strand, within CCNA_02254 at 2404.700 kb on - strand, within CCNA_02254 at 2404.736 kb on - strand, within CCNA_02254 at 2404.737 kb on - strand, within CCNA_02254 at 2404.749 kb on - strand, within CCNA_02254 at 2404.749 kb on - strand, within CCNA_02254 at 2404.815 kb on - strand, within CCNA_02254 at 2404.896 kb on - strand at 2405.096 kb on - strand, within CCNA_02254 at 2405.154 kb on - strand, within CCNA_02254 at 2405.159 kb on - strand at 2405.225 kb on + strand, within CCNA_02254 at 2405.263 kb on - strand, within CCNA_02254 at 2405.282 kb on + strand, within CCNA_02254 at 2405.378 kb on + strand, within CCNA_02254 at 2405.386 kb on - strand, within CCNA_02254 at 2405.397 kb on + strand, within CCNA_02254
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,403,398 - CCNA_02253 0.51 +1.0 2,403,398 - CCNA_02253 0.51 -0.2 2,403,448 - CCNA_02253 0.54 -0.0 2,403,497 + CCNA_02253 0.57 +0.3 2,403,534 - CCNA_02253 0.59 -1.1 2,403,534 - CCNA_02253 0.59 -0.9 2,403,577 + CCNA_02253 0.61 +0.4 2,403,577 + CCNA_02253 0.61 -0.8 2,403,642 - CCNA_02253 0.65 +0.1 2,403,668 + CCNA_02253 0.66 -0.7 2,403,676 - CCNA_02253 0.67 -0.8 2,403,681 - CCNA_02253 0.67 +0.4 2,403,731 + CCNA_02253 0.70 -0.9 2,403,757 + CCNA_02253 0.71 +0.4 2,403,764 + CCNA_02253 0.72 +0.4 2,403,765 - CCNA_02253 0.72 -2.2 2,403,817 + CCNA_02253 0.75 +0.2 2,403,817 + CCNA_02253 0.75 +1.2 2,403,818 + CCNA_02253 0.75 -1.8 2,403,826 - CCNA_02253 0.75 -0.6 2,403,891 - CCNA_02253 0.79 -1.2 2,403,924 + CCNA_02253 0.81 -0.6 2,403,956 + CCNA_02253 0.82 -0.8 2,403,969 - CCNA_02253 0.83 +1.5 2,403,988 + CCNA_02253 0.84 -1.1 2,404,013 + CCNA_02253 0.86 +0.8 2,404,041 - CCNA_02253 0.87 -0.6 2,404,079 + CCNA_02253 0.89 -1.7 2,404,079 + CCNA_02253 0.89 +0.9 2,404,097 - -1.0 2,404,173 + +0.1 2,404,182 + -0.4 2,404,187 - +0.4 2,404,197 + -1.1 2,404,243 + +0.1 2,404,255 - -0.1 2,404,270 + -0.7 2,404,317 - +0.6 2,404,322 + +0.0 2,404,322 + +1.1 2,404,343 + CCNA_03965 0.23 -0.0 2,404,343 + CCNA_03965 0.23 -2.2 2,404,518 - -1.4 2,404,518 - +0.8 2,404,518 - +1.4 2,404,590 - -0.1 2,404,629 + +0.6 2,404,658 - CCNA_02254 0.12 +1.0 2,404,659 - CCNA_02254 0.12 +1.8 2,404,700 - CCNA_02254 0.16 +2.2 2,404,736 - CCNA_02254 0.19 +0.7 2,404,737 - CCNA_02254 0.19 -0.7 2,404,749 - CCNA_02254 0.20 +0.1 2,404,749 - CCNA_02254 0.20 +0.6 2,404,815 - CCNA_02254 0.26 +1.3 2,404,896 - +3.2 2,405,096 - CCNA_02254 0.50 +1.6 2,405,154 - CCNA_02254 0.55 +2.2 2,405,159 - +1.4 2,405,225 + CCNA_02254 0.61 +1.4 2,405,263 - CCNA_02254 0.64 +1.4 2,405,282 + CCNA_02254 0.66 +0.3 2,405,378 + CCNA_02254 0.74 +0.6 2,405,386 - CCNA_02254 0.75 +0.2 2,405,397 + CCNA_02254 0.76 +0.1
Or see this region's nucleotide sequence