Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00460 and CCNA_03921 are separated by 853 nucleotides
CCNA_00460: CCNA_00460 - hypothetical protein, at 473,245 to 473,400
_00460
CCNA_03921: CCNA_03921 - UDP-glucose 6-dehydrogenase related protein, at 474,254 to 474,409
_03921
Position (kb) 474
475 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 473.260 kb on - strand at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.278 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.304 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.317 kb on - strand, within CCNA_00460 at 473.319 kb on + strand, within CCNA_00460 at 473.322 kb on - strand, within CCNA_00460 at 473.324 kb on + strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.388 kb on - strand at 473.392 kb on + strand at 473.474 kb on - strand at 473.501 kb on + strand at 473.501 kb on + strand at 473.509 kb on - strand at 473.563 kb on - strand at 473.573 kb on + strand at 473.586 kb on + strand at 473.588 kb on + strand at 473.596 kb on - strand at 473.637 kb on + strand at 473.656 kb on + strand at 473.664 kb on - strand at 473.665 kb on - strand at 473.669 kb on - strand at 473.885 kb on + strand at 473.898 kb on + strand at 473.939 kb on - strand at 473.942 kb on + strand at 473.943 kb on + strand at 473.950 kb on + strand at 473.951 kb on - strand at 473.951 kb on - strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.985 kb on - strand at 473.985 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.018 kb on + strand at 474.021 kb on - strand at 474.026 kb on - strand at 474.029 kb on + strand at 474.054 kb on + strand at 474.073 kb on + strand at 474.073 kb on + strand at 474.076 kb on - strand at 474.081 kb on - strand at 474.114 kb on + strand at 474.122 kb on - strand at 474.143 kb on - strand at 474.186 kb on + strand at 474.236 kb on + strand at 474.239 kb on - strand at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.286 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.326 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921 at 474.458 kb on + strand at 474.492 kb on + strand at 474.494 kb on + strand at 474.494 kb on + strand at 474.502 kb on - strand at 474.511 kb on + strand at 474.514 kb on - strand at 474.519 kb on - strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.553 kb on + strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.582 kb on - strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.600 kb on - strand at 474.621 kb on + strand at 474.623 kb on + strand at 474.629 kb on - strand at 474.631 kb on - strand at 474.636 kb on + strand at 474.644 kb on - strand at 474.695 kb on + strand at 474.695 kb on + strand at 474.800 kb on - strand at 474.820 kb on + strand at 474.824 kb on + strand at 474.828 kb on - strand at 474.859 kb on + strand at 474.869 kb on + strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.894 kb on - strand at 474.989 kb on - strand at 474.989 kb on - strand at 474.995 kb on + strand at 475.008 kb on - strand at 475.010 kb on + strand at 475.015 kb on + strand at 475.020 kb on + strand at 475.028 kb on - strand at 475.040 kb on + strand at 475.047 kb on + strand at 475.048 kb on - strand at 475.048 kb on - strand at 475.048 kb on - strand at 475.053 kb on - strand at 475.053 kb on - strand at 475.055 kb on - strand at 475.055 kb on - strand at 475.055 kb on - strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.069 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.078 kb on + strand at 475.086 kb on - strand at 475.135 kb on + strand at 475.143 kb on - strand at 475.190 kb on - strand at 475.233 kb on - strand at 475.233 kb on - strand at 475.259 kb on + strand at 475.259 kb on + strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.260 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.282 kb on + strand at 475.330 kb on + strand at 475.368 kb on + strand at 475.378 kb on + strand at 475.386 kb on - strand at 475.396 kb on - strand at 475.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 473,260 - -0.5 473,275 + CCNA_00460 0.19 +0.5 473,275 + CCNA_00460 0.19 +0.7 473,275 + CCNA_00460 0.19 +0.4 473,275 + CCNA_00460 0.19 +0.5 473,275 + CCNA_00460 0.19 -0.3 473,275 + CCNA_00460 0.19 +0.8 473,278 - CCNA_00460 0.21 -0.2 473,283 - CCNA_00460 0.24 -1.8 473,283 - CCNA_00460 0.24 +2.4 473,283 - CCNA_00460 0.24 +3.3 473,304 + CCNA_00460 0.38 -0.4 473,309 + CCNA_00460 0.41 -0.2 473,309 + CCNA_00460 0.41 -1.1 473,309 + CCNA_00460 0.41 -0.2 473,317 - CCNA_00460 0.46 -0.7 473,319 + CCNA_00460 0.47 -0.7 473,322 - CCNA_00460 0.49 -0.1 473,324 + CCNA_00460 0.51 -1.1 473,327 - CCNA_00460 0.53 +0.5 473,327 - CCNA_00460 0.53 -0.7 473,345 + CCNA_00460 0.64 +1.1 473,345 + CCNA_00460 0.64 +0.1 473,345 + CCNA_00460 0.64 -0.6 473,345 + CCNA_00460 0.64 +0.7 473,353 - CCNA_00460 0.69 +0.5 473,353 - CCNA_00460 0.69 +0.6 473,388 - +0.9 473,392 + -1.5 473,474 - +1.6 473,501 + -1.1 473,501 + -1.2 473,509 - -2.5 473,563 - +0.7 473,573 + -0.9 473,586 + +0.6 473,588 + -0.4 473,596 - -0.7 473,637 + -1.9 473,656 + -1.2 473,664 - -0.4 473,665 - -0.3 473,669 - -1.2 473,885 + -0.0 473,898 + -0.9 473,939 - -1.4 473,942 + -0.3 473,943 + +0.1 473,950 + +2.5 473,951 - +0.3 473,951 - -2.7 473,977 + -0.1 473,977 + -1.4 473,977 + -0.7 473,977 + -1.1 473,977 + -1.2 473,977 + -0.9 473,985 - -0.3 473,985 - -0.9 474,016 - -0.9 474,016 - +1.2 474,016 - -0.7 474,016 - +0.4 474,018 + -0.9 474,021 - +1.7 474,026 - -1.1 474,029 + +1.5 474,054 + -0.4 474,073 + -0.3 474,073 + -0.7 474,076 - -0.8 474,081 - -1.1 474,114 + -0.8 474,122 - +1.1 474,143 - -0.5 474,186 + -0.5 474,236 + +0.8 474,239 - +0.3 474,278 + CCNA_03921 0.15 +2.0 474,278 + CCNA_03921 0.15 -0.5 474,278 + CCNA_03921 0.15 -1.4 474,286 - CCNA_03921 0.21 -1.9 474,300 - CCNA_03921 0.29 -0.7 474,300 - CCNA_03921 0.29 -0.9 474,326 + CCNA_03921 0.46 -1.8 474,341 + CCNA_03921 0.56 -1.8 474,341 + CCNA_03921 0.56 -0.3 474,458 + +1.3 474,492 + -0.5 474,494 + -0.3 474,494 + -1.0 474,502 - -1.5 474,511 + -0.4 474,514 - -0.1 474,519 - +0.3 474,545 + +1.8 474,545 + +0.0 474,545 + -2.0 474,545 + -0.1 474,545 + +0.9 474,553 + +1.2 474,553 - -1.1 474,553 - -1.1 474,553 - -2.0 474,582 - -0.2 474,592 + -0.8 474,592 + -0.4 474,600 - +0.0 474,621 + +0.3 474,623 + -0.4 474,629 - +0.8 474,631 - +0.2 474,636 + +1.6 474,644 - +1.2 474,695 + +0.5 474,695 + -1.2 474,800 - +0.1 474,820 + -0.2 474,824 + -0.5 474,828 - -0.4 474,859 + -0.0 474,869 + -2.1 474,877 - +1.3 474,877 - -0.7 474,894 - +1.0 474,989 - +1.1 474,989 - -0.9 474,995 + +0.1 475,008 - -1.7 475,010 + +1.2 475,015 + +0.2 475,020 + +0.8 475,028 - -0.6 475,040 + -0.1 475,047 + +1.4 475,048 - -0.7 475,048 - +0.5 475,048 - +0.1 475,053 - -0.9 475,053 - -1.0 475,055 - -0.3 475,055 - -0.3 475,055 - -0.0 475,067 + -0.1 475,067 + +0.3 475,067 + -2.5 475,067 + +1.7 475,067 + -1.7 475,069 - +0.8 475,075 - -0.3 475,075 - -0.8 475,075 - +0.7 475,075 - -0.2 475,075 - +0.8 475,078 + +0.8 475,086 - +1.0 475,135 + -1.4 475,143 - -0.1 475,190 - +0.8 475,233 - -1.6 475,233 - -1.7 475,259 + -0.4 475,259 + +0.1 475,260 + -0.7 475,260 + -0.1 475,260 - -0.7 475,268 - -0.4 475,268 - -1.2 475,268 - -0.2 475,268 - -1.0 475,268 - -1.8 475,282 + +0.1 475,330 + -2.4 475,368 + +1.0 475,378 + -0.6 475,386 - +0.5 475,396 - +2.2 475,402 + -1.3
Or see this region's nucleotide sequence