Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03917

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00239 and CCNA_00240 are separated by 75 nucleotidesCCNA_00240 and CCNA_00241 overlap by 4 nucleotidesCCNA_00241 and CCNA_03917 are separated by 239 nucleotidesCCNA_03917 and CCNA_00243 are separated by 67 nucleotidesCCNA_00243 and CCNA_00244 are separated by 142 nucleotides CCNA_00239: CCNA_00239 - serine kinase/phosphatase HprK, at 254,808 to 255,242 _00239 CCNA_00240: CCNA_00240 - PTS system, IIA component, at 255,318 to 255,725 _00240 CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000 _00241 CCNA_03917: CCNA_03917 - hypothetical protein, at 256,240 to 256,344 _03917 CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 Position (kb) 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 255.249 kb on + strandat 255.257 kb on - strandat 255.257 kb on - strandat 255.273 kb on + strandat 255.276 kb on - strandat 255.281 kb on - strandat 255.281 kb on - strandat 255.302 kb on - strandat 255.304 kb on - strandat 255.309 kb on - strandat 255.378 kb on - strand, within CCNA_00240at 255.566 kb on + strand, within CCNA_00240at 255.697 kb on + strandat 255.708 kb on - strandat 255.733 kb on + strandat 255.734 kb on + strandat 255.921 kb on + strand, within CCNA_00241at 255.990 kb on - strandat 255.995 kb on + strandat 256.003 kb on - strandat 256.003 kb on - strandat 256.012 kb on + strandat 256.019 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.041 kb on + strandat 256.095 kb on + strandat 256.119 kb on + strandat 256.122 kb on - strandat 256.124 kb on + strandat 256.124 kb on + strandat 256.132 kb on - strandat 256.132 kb on - strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.134 kb on + strandat 256.139 kb on - strandat 256.142 kb on - strandat 256.142 kb on - strandat 256.156 kb on - strandat 256.206 kb on + strandat 256.214 kb on - strandat 256.214 kb on - strandat 256.240 kb on + strandat 256.249 kb on - strandat 256.313 kb on + strand, within CCNA_03917at 256.313 kb on + strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.321 kb on - strand, within CCNA_03917at 256.343 kb on - strandat 256.350 kb on - strandat 256.374 kb on + strandat 256.394 kb on + strandat 256.396 kb on - strandat 256.402 kb on - strandat 256.409 kb on - strandat 256.428 kb on + strandat 256.436 kb on - strandat 256.458 kb on - strand, within CCNA_00243at 256.479 kb on - strand, within CCNA_00243at 256.487 kb on - strand, within CCNA_00243at 256.533 kb on + strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.541 kb on - strand, within CCNA_00243at 256.558 kb on + strand, within CCNA_00243at 256.575 kb on - strand, within CCNA_00243at 256.582 kb on - strand, within CCNA_00243at 256.614 kb on + strand, within CCNA_00243at 256.622 kb on - strand, within CCNA_00243at 256.791 kb on - strandat 256.819 kb on + strandat 256.860 kb on + strandat 256.892 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.999 kb on - strandat 256.999 kb on - strandat 256.999 kb on - strandat 257.024 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.054 kb on - strand, within CCNA_00244at 257.074 kb on + strand, within CCNA_00244at 257.077 kb on - strand, within CCNA_00244at 257.088 kb on + strand, within CCNA_00244at 257.120 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.155 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.181 kb on - strand, within CCNA_00244at 257.191 kb on - strand, within CCNA_00244at 257.210 kb on - strand, within CCNA_00244at 257.251 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.264 kb on + strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.316 kb on - strand, within CCNA_00244at 257.328 kb on + strand, within CCNA_00244at 257.334 kb on - strand, within CCNA_00244

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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255,249 + -0.2
255,257 - +1.9
255,257 - -0.6
255,273 + -1.6
255,276 - +1.1
255,281 - -0.4
255,281 - -0.8
255,302 - -0.9
255,304 - +1.3
255,309 - -0.2
255,378 - CCNA_00240 0.15 +1.3
255,566 + CCNA_00240 0.61 +1.6
255,697 + -0.5
255,708 - -0.4
255,733 + -1.4
255,734 + -0.9
255,921 + CCNA_00241 0.71 -0.3
255,990 - +0.2
255,995 + -0.3
256,003 - +1.3
256,003 - -1.2
256,012 + -2.4
256,019 + -1.2
256,041 + +0.5
256,041 + +0.1
256,041 + +0.2
256,041 + -0.5
256,095 + -0.7
256,119 + -0.9
256,122 - -1.4
256,124 + +0.8
256,124 + -0.4
256,132 - -2.3
256,132 - +0.2
256,134 + -1.5
256,134 + +0.1
256,134 + -0.9
256,139 - +0.8
256,142 - +2.2
256,142 - -1.2
256,156 - -0.9
256,206 + -0.4
256,214 - -0.9
256,214 - +1.2
256,240 + -0.9
256,249 - +1.1
256,313 + CCNA_03917 0.70 +0.3
256,313 + CCNA_03917 0.70 -1.9
256,321 - CCNA_03917 0.77 -0.6
256,321 - CCNA_03917 0.77 -2.2
256,343 - -0.0
256,350 - -1.8
256,374 + +0.1
256,394 + -0.9
256,396 - -1.4
256,402 - -1.7
256,409 - -0.2
256,428 + -0.1
256,436 - +0.6
256,458 - CCNA_00243 0.12 +0.0
256,479 - CCNA_00243 0.17 -0.2
256,487 - CCNA_00243 0.19 +0.7
256,533 + CCNA_00243 0.30 +1.8
256,541 - CCNA_00243 0.32 -2.4
256,541 - CCNA_00243 0.32 +0.3
256,558 + CCNA_00243 0.37 -1.8
256,575 - CCNA_00243 0.41 -0.5
256,582 - CCNA_00243 0.43 +1.6
256,614 + CCNA_00243 0.51 -0.9
256,622 - CCNA_00243 0.53 +1.3
256,791 - -1.0
256,819 + -1.0
256,860 + +1.1
256,892 - -2.1
256,991 + +0.1
256,991 + +0.1
256,999 - +0.5
256,999 - -0.2
256,999 - -2.3
257,024 + CCNA_00244 0.11 -1.2
257,046 + CCNA_00244 0.14 -0.7
257,046 + CCNA_00244 0.14 -1.4
257,054 - CCNA_00244 0.16 +1.3
257,074 + CCNA_00244 0.19 +0.8
257,077 - CCNA_00244 0.19 +2.3
257,088 + CCNA_00244 0.21 +0.7
257,120 + CCNA_00244 0.26 -1.8
257,147 + CCNA_00244 0.30 -2.8
257,147 + CCNA_00244 0.30 -1.5
257,147 + CCNA_00244 0.30 +2.3
257,147 + CCNA_00244 0.30 +1.1
257,155 - CCNA_00244 0.31 +1.8
257,155 - CCNA_00244 0.31 +1.5
257,155 - CCNA_00244 0.31 -0.4
257,155 - CCNA_00244 0.31 +1.2
257,173 + CCNA_00244 0.34 +0.7
257,181 - CCNA_00244 0.36 -0.3
257,191 - CCNA_00244 0.37 +1.9
257,210 - CCNA_00244 0.40 +0.6
257,251 - CCNA_00244 0.46 -1.4
257,259 + CCNA_00244 0.48 +1.0
257,264 + CCNA_00244 0.48 -0.7
257,264 + CCNA_00244 0.48 -0.3
257,264 + CCNA_00244 0.48 +0.8
257,272 - CCNA_00244 0.50 -2.7
257,272 - CCNA_00244 0.50 +1.6
257,272 - CCNA_00244 0.50 -0.5
257,272 - CCNA_00244 0.50 -2.3
257,272 - CCNA_00244 0.50 +0.7
257,272 - CCNA_00244 0.50 +0.9
257,272 - CCNA_00244 0.50 -0.8
257,272 - CCNA_00244 0.50 +0.0
257,307 + CCNA_00244 0.55 -0.6
257,316 - CCNA_00244 0.57 -0.8
257,316 - CCNA_00244 0.57 -0.5
257,328 + CCNA_00244 0.58 +0.3
257,334 - CCNA_00244 0.59 -0.8

Or see this region's nucleotide sequence