Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02619 and CCNA_02620 are separated by 78 nucleotides CCNA_02620 and CCNA_02621 are separated by 125 nucleotides
CCNA_02619: CCNA_02619 - stomatin/prohibitin-related protein, at 2,767,206 to 2,768,111
_02619
CCNA_02620: CCNA_02620 - hypothetical protein, at 2,768,190 to 2,768,480
_02620
CCNA_02621: CCNA_02621 - CAAX amino terminal protease family, at 2,768,606 to 2,769,535
_02621
Position (kb)
2768
2769 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2767.209 kb on + strand at 2767.276 kb on - strand at 2767.282 kb on - strand at 2767.282 kb on - strand at 2767.287 kb on + strand at 2767.295 kb on - strand at 2767.332 kb on - strand, within CCNA_02619 at 2767.342 kb on + strand, within CCNA_02619 at 2767.346 kb on + strand, within CCNA_02619 at 2767.349 kb on - strand, within CCNA_02619 at 2767.359 kb on + strand, within CCNA_02619 at 2767.364 kb on + strand, within CCNA_02619 at 2767.398 kb on - strand, within CCNA_02619 at 2767.398 kb on - strand, within CCNA_02619 at 2767.409 kb on + strand, within CCNA_02619 at 2767.422 kb on - strand, within CCNA_02619 at 2767.435 kb on + strand, within CCNA_02619 at 2767.435 kb on + strand, within CCNA_02619 at 2767.450 kb on + strand, within CCNA_02619 at 2767.450 kb on + strand, within CCNA_02619 at 2767.450 kb on + strand, within CCNA_02619 at 2767.456 kb on - strand, within CCNA_02619 at 2767.458 kb on - strand, within CCNA_02619 at 2767.472 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.492 kb on + strand, within CCNA_02619 at 2767.495 kb on - strand, within CCNA_02619 at 2767.499 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.500 kb on - strand, within CCNA_02619 at 2767.505 kb on - strand, within CCNA_02619 at 2767.520 kb on + strand, within CCNA_02619 at 2767.586 kb on + strand, within CCNA_02619 at 2767.609 kb on - strand, within CCNA_02619 at 2767.617 kb on + strand, within CCNA_02619 at 2767.624 kb on + strand, within CCNA_02619 at 2767.625 kb on + strand, within CCNA_02619 at 2767.628 kb on + strand, within CCNA_02619 at 2767.733 kb on - strand, within CCNA_02619 at 2767.734 kb on + strand, within CCNA_02619 at 2767.741 kb on - strand, within CCNA_02619 at 2767.769 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.770 kb on + strand, within CCNA_02619 at 2767.777 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.778 kb on - strand, within CCNA_02619 at 2767.831 kb on + strand, within CCNA_02619 at 2767.857 kb on - strand, within CCNA_02619 at 2767.871 kb on + strand, within CCNA_02619 at 2767.871 kb on + strand, within CCNA_02619 at 2767.877 kb on + strand, within CCNA_02619 at 2767.877 kb on + strand, within CCNA_02619 at 2767.885 kb on - strand, within CCNA_02619 at 2767.885 kb on - strand, within CCNA_02619 at 2767.885 kb on - strand, within CCNA_02619 at 2767.938 kb on + strand, within CCNA_02619 at 2767.943 kb on + strand, within CCNA_02619 at 2767.946 kb on - strand, within CCNA_02619 at 2767.964 kb on + strand, within CCNA_02619 at 2767.991 kb on + strand, within CCNA_02619 at 2768.065 kb on + strand at 2768.078 kb on - strand at 2768.142 kb on + strand at 2768.243 kb on + strand, within CCNA_02620 at 2768.272 kb on + strand, within CCNA_02620 at 2768.285 kb on - strand, within CCNA_02620 at 2768.359 kb on + strand, within CCNA_02620 at 2768.389 kb on - strand, within CCNA_02620 at 2768.409 kb on + strand, within CCNA_02620 at 2768.426 kb on - strand, within CCNA_02620 at 2768.475 kb on + strand at 2768.483 kb on - strand at 2768.492 kb on + strand at 2768.500 kb on - strand at 2768.500 kb on - strand at 2768.600 kb on - strand at 2768.604 kb on + strand at 2768.612 kb on - strand at 2768.621 kb on - strand at 2768.623 kb on + strand at 2768.636 kb on - strand at 2768.636 kb on - strand at 2768.637 kb on + strand at 2768.683 kb on - strand at 2768.688 kb on - strand at 2768.799 kb on + strand, within CCNA_02621 at 2768.807 kb on - strand, within CCNA_02621 at 2768.827 kb on + strand, within CCNA_02621 at 2768.835 kb on - strand, within CCNA_02621 at 2768.835 kb on - strand, within CCNA_02621 at 2768.836 kb on - strand, within CCNA_02621 at 2768.909 kb on - strand, within CCNA_02621 at 2768.945 kb on + strand, within CCNA_02621 at 2768.950 kb on + strand, within CCNA_02621 at 2768.958 kb on - strand, within CCNA_02621 at 2768.997 kb on - strand, within CCNA_02621 at 2769.014 kb on - strand, within CCNA_02621 at 2769.027 kb on + strand, within CCNA_02621 at 2769.035 kb on - strand, within CCNA_02621 at 2769.063 kb on + strand, within CCNA_02621 at 2769.066 kb on - strand, within CCNA_02621 at 2769.071 kb on - strand, within CCNA_02621 at 2769.107 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.137 kb on + strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.145 kb on - strand, within CCNA_02621 at 2769.185 kb on - strand, within CCNA_02621 at 2769.187 kb on + strand, within CCNA_02621 at 2769.195 kb on - strand, within CCNA_02621 at 2769.199 kb on + strand, within CCNA_02621 at 2769.200 kb on + strand, within CCNA_02621 at 2769.221 kb on + strand, within CCNA_02621 at 2769.224 kb on - strand, within CCNA_02621 at 2769.243 kb on + strand, within CCNA_02621 at 2769.251 kb on - strand, within CCNA_02621 at 2769.276 kb on - strand, within CCNA_02621 at 2769.276 kb on - strand, within CCNA_02621 at 2769.278 kb on + strand, within CCNA_02621 at 2769.296 kb on + strand, within CCNA_02621 at 2769.304 kb on - strand, within CCNA_02621 at 2769.321 kb on + strand, within CCNA_02621 at 2769.321 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.327 kb on + strand, within CCNA_02621 at 2769.329 kb on - strand, within CCNA_02621 at 2769.329 kb on - strand, within CCNA_02621 at 2769.334 kb on + strand, within CCNA_02621 at 2769.334 kb on + strand, within CCNA_02621 at 2769.353 kb on + strand, within CCNA_02621 at 2769.356 kb on + strand, within CCNA_02621 at 2769.388 kb on + strand, within CCNA_02621 at 2769.426 kb on + strand, within CCNA_02621 at 2769.428 kb on + strand, within CCNA_02621 at 2769.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,767,209 + -0.4 2,767,276 - +0.8 2,767,282 - -0.2 2,767,282 - +0.6 2,767,287 + +1.0 2,767,295 - -0.7 2,767,332 - CCNA_02619 0.14 +1.0 2,767,342 + CCNA_02619 0.15 +0.1 2,767,346 + CCNA_02619 0.15 +0.1 2,767,349 - CCNA_02619 0.16 -1.1 2,767,359 + CCNA_02619 0.17 -2.1 2,767,364 + CCNA_02619 0.17 -0.6 2,767,398 - CCNA_02619 0.21 -0.8 2,767,398 - CCNA_02619 0.21 -1.3 2,767,409 + CCNA_02619 0.22 +0.6 2,767,422 - CCNA_02619 0.24 -0.3 2,767,435 + CCNA_02619 0.25 -0.2 2,767,435 + CCNA_02619 0.25 +0.9 2,767,450 + CCNA_02619 0.27 +0.0 2,767,450 + CCNA_02619 0.27 -0.4 2,767,450 + CCNA_02619 0.27 +0.2 2,767,456 - CCNA_02619 0.28 +0.4 2,767,458 - CCNA_02619 0.28 -1.2 2,767,472 + CCNA_02619 0.29 -0.9 2,767,492 + CCNA_02619 0.32 -0.2 2,767,492 + CCNA_02619 0.32 -0.6 2,767,492 + CCNA_02619 0.32 -1.2 2,767,492 + CCNA_02619 0.32 -0.7 2,767,495 - CCNA_02619 0.32 +0.6 2,767,499 - CCNA_02619 0.32 +0.1 2,767,500 - CCNA_02619 0.32 +1.3 2,767,500 - CCNA_02619 0.32 -1.0 2,767,500 - CCNA_02619 0.32 -0.2 2,767,500 - CCNA_02619 0.32 +0.2 2,767,500 - CCNA_02619 0.32 +1.2 2,767,505 - CCNA_02619 0.33 +1.2 2,767,520 + CCNA_02619 0.35 -1.2 2,767,586 + CCNA_02619 0.42 +0.0 2,767,609 - CCNA_02619 0.44 -0.6 2,767,617 + CCNA_02619 0.45 +1.4 2,767,624 + CCNA_02619 0.46 -0.2 2,767,625 + CCNA_02619 0.46 -0.3 2,767,628 + CCNA_02619 0.47 +0.8 2,767,733 - CCNA_02619 0.58 -2.3 2,767,734 + CCNA_02619 0.58 -0.4 2,767,741 - CCNA_02619 0.59 -0.9 2,767,769 + CCNA_02619 0.62 -1.6 2,767,770 + CCNA_02619 0.62 -0.2 2,767,770 + CCNA_02619 0.62 -1.0 2,767,770 + CCNA_02619 0.62 +0.2 2,767,770 + CCNA_02619 0.62 +0.0 2,767,770 + CCNA_02619 0.62 +1.0 2,767,770 + CCNA_02619 0.62 -0.1 2,767,770 + CCNA_02619 0.62 -1.4 2,767,777 - CCNA_02619 0.63 -0.3 2,767,778 - CCNA_02619 0.63 +0.8 2,767,778 - CCNA_02619 0.63 +0.2 2,767,778 - CCNA_02619 0.63 +1.5 2,767,778 - CCNA_02619 0.63 +0.3 2,767,831 + CCNA_02619 0.69 -0.5 2,767,857 - CCNA_02619 0.72 -1.4 2,767,871 + CCNA_02619 0.73 -0.0 2,767,871 + CCNA_02619 0.73 -0.9 2,767,877 + CCNA_02619 0.74 +0.4 2,767,877 + CCNA_02619 0.74 -0.5 2,767,885 - CCNA_02619 0.75 +0.6 2,767,885 - CCNA_02619 0.75 +0.4 2,767,885 - CCNA_02619 0.75 -0.2 2,767,938 + CCNA_02619 0.81 +0.3 2,767,943 + CCNA_02619 0.81 -1.4 2,767,946 - CCNA_02619 0.82 +0.5 2,767,964 + CCNA_02619 0.84 -0.7 2,767,991 + CCNA_02619 0.87 -0.5 2,768,065 + -0.2 2,768,078 - -0.6 2,768,142 + -0.1 2,768,243 + CCNA_02620 0.18 -0.3 2,768,272 + CCNA_02620 0.28 -0.1 2,768,285 - CCNA_02620 0.33 +0.7 2,768,359 + CCNA_02620 0.58 -0.6 2,768,389 - CCNA_02620 0.68 +2.5 2,768,409 + CCNA_02620 0.75 -1.3 2,768,426 - CCNA_02620 0.81 +1.1 2,768,475 + -1.1 2,768,483 - +1.4 2,768,492 + +1.0 2,768,500 - -0.1 2,768,500 - +2.9 2,768,600 - -1.2 2,768,604 + -0.5 2,768,612 - -0.4 2,768,621 - -0.7 2,768,623 + -0.7 2,768,636 - +0.5 2,768,636 - -0.1 2,768,637 + +1.2 2,768,683 - -0.1 2,768,688 - +2.3 2,768,799 + CCNA_02621 0.21 -1.3 2,768,807 - CCNA_02621 0.22 -0.4 2,768,827 + CCNA_02621 0.24 +0.2 2,768,835 - CCNA_02621 0.25 +2.4 2,768,835 - CCNA_02621 0.25 -0.9 2,768,836 - CCNA_02621 0.25 +1.0 2,768,909 - CCNA_02621 0.33 -0.7 2,768,945 + CCNA_02621 0.36 -0.7 2,768,950 + CCNA_02621 0.37 +0.4 2,768,958 - CCNA_02621 0.38 -0.1 2,768,997 - CCNA_02621 0.42 -0.7 2,769,014 - CCNA_02621 0.44 -1.8 2,769,027 + CCNA_02621 0.45 -0.2 2,769,035 - CCNA_02621 0.46 -1.1 2,769,063 + CCNA_02621 0.49 +0.3 2,769,066 - CCNA_02621 0.49 +0.7 2,769,071 - CCNA_02621 0.50 -0.5 2,769,107 + CCNA_02621 0.54 -0.5 2,769,137 + CCNA_02621 0.57 +2.1 2,769,137 + CCNA_02621 0.57 +0.7 2,769,137 + CCNA_02621 0.57 -0.1 2,769,145 - CCNA_02621 0.58 -0.6 2,769,145 - CCNA_02621 0.58 -0.5 2,769,145 - CCNA_02621 0.58 +1.0 2,769,185 - CCNA_02621 0.62 -1.0 2,769,187 + CCNA_02621 0.62 +2.9 2,769,195 - CCNA_02621 0.63 -0.5 2,769,199 + CCNA_02621 0.64 +1.8 2,769,200 + CCNA_02621 0.64 +2.4 2,769,221 + CCNA_02621 0.66 -0.6 2,769,224 - CCNA_02621 0.66 +0.5 2,769,243 + CCNA_02621 0.68 -1.1 2,769,251 - CCNA_02621 0.69 -2.0 2,769,276 - CCNA_02621 0.72 -0.1 2,769,276 - CCNA_02621 0.72 -0.1 2,769,278 + CCNA_02621 0.72 +1.7 2,769,296 + CCNA_02621 0.74 -0.1 2,769,304 - CCNA_02621 0.75 -1.0 2,769,321 + CCNA_02621 0.77 -1.5 2,769,321 + CCNA_02621 0.77 +1.0 2,769,327 + CCNA_02621 0.78 -2.5 2,769,327 + CCNA_02621 0.78 -1.0 2,769,327 + CCNA_02621 0.78 +0.9 2,769,327 + CCNA_02621 0.78 +0.7 2,769,329 - CCNA_02621 0.78 +0.4 2,769,329 - CCNA_02621 0.78 -0.4 2,769,334 + CCNA_02621 0.78 -1.1 2,769,334 + CCNA_02621 0.78 -0.6 2,769,353 + CCNA_02621 0.80 +0.5 2,769,356 + CCNA_02621 0.81 -1.0 2,769,388 + CCNA_02621 0.84 -0.6 2,769,426 + CCNA_02621 0.88 -0.6 2,769,428 + CCNA_02621 0.88 -0.8 2,769,443 + +0.7
Or see this region's nucleotide sequence