Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02343 and CCNA_02344 are separated by 92 nucleotides CCNA_02344 and CCNA_02345 are separated by 160 nucleotides CCNA_02345 and CCNA_02346 overlap by 4 nucleotides
CCNA_02343: CCNA_02343 - hypothetical protein with pentapeptide repeats, at 2,482,784 to 2,484,043
_02343
CCNA_02344: CCNA_02344 - phosphoglycerate mutase, at 2,484,136 to 2,484,849
_02344
CCNA_02345: CCNA_02345 - hypothetical protein, at 2,485,010 to 2,485,225
_02345
CCNA_02346: CCNA_02346 - arabinose-5-phosphate isomerase, at 2,485,222 to 2,486,178
_02346
Position (kb)
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2484.082 kb on - strand at 2484.141 kb on - strand at 2484.153 kb on - strand at 2484.179 kb on - strand at 2484.894 kb on - strand at 2484.894 kb on - strand at 2484.894 kb on - strand at 2484.900 kb on - strand at 2484.922 kb on - strand at 2484.963 kb on - strand at 2484.967 kb on - strand at 2484.967 kb on - strand at 2484.968 kb on - strand at 2484.977 kb on + strand at 2485.053 kb on + strand, within CCNA_02345 at 2485.064 kb on + strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.069 kb on + strand, within CCNA_02345 at 2485.077 kb on - strand, within CCNA_02345 at 2485.077 kb on - strand, within CCNA_02345 at 2485.084 kb on + strand, within CCNA_02345 at 2485.143 kb on - strand, within CCNA_02345 at 2485.143 kb on - strand, within CCNA_02345 at 2485.143 kb on - strand, within CCNA_02345 at 2485.143 kb on - strand, within CCNA_02345 at 2485.170 kb on + strand, within CCNA_02345 at 2485.174 kb on + strand, within CCNA_02345 at 2485.196 kb on + strand, within CCNA_02345 at 2485.230 kb on + strand at 2485.230 kb on + strand at 2485.238 kb on - strand at 2485.238 kb on - strand at 2486.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,484,082 - +1.5 2,484,141 - +0.3 2,484,153 - -0.9 2,484,179 - +0.0 2,484,894 - +0.4 2,484,894 - -0.4 2,484,894 - +1.0 2,484,900 - -1.1 2,484,922 - -0.3 2,484,963 - +0.6 2,484,967 - -0.3 2,484,967 - -0.8 2,484,968 - -0.4 2,484,977 + +0.6 2,485,053 + CCNA_02345 0.20 +2.8 2,485,064 + CCNA_02345 0.25 +2.8 2,485,069 + CCNA_02345 0.27 +1.1 2,485,069 + CCNA_02345 0.27 -0.1 2,485,069 + CCNA_02345 0.27 -0.1 2,485,077 - CCNA_02345 0.31 -0.7 2,485,077 - CCNA_02345 0.31 -1.7 2,485,084 + CCNA_02345 0.34 +2.8 2,485,143 - CCNA_02345 0.62 -1.1 2,485,143 - CCNA_02345 0.62 +0.7 2,485,143 - CCNA_02345 0.62 +3.3 2,485,143 - CCNA_02345 0.62 -0.7 2,485,170 + CCNA_02345 0.74 +0.1 2,485,174 + CCNA_02345 0.76 +1.2 2,485,196 + CCNA_02345 0.86 +0.3 2,485,230 + +0.3 2,485,230 + -0.0 2,485,238 - +1.8 2,485,238 - -1.5 2,486,191 - -2.1
Or see this region's nucleotide sequence