Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01946 and CCNA_01947 are separated by 127 nucleotides CCNA_01947 and CCNA_01948 are separated by 233 nucleotides
CCNA_01946: CCNA_01946 - tyrosyl-tRNA synthetase, at 2,088,215 to 2,089,540
_01946
CCNA_01947: CCNA_01947 - thioredoxin peroxidase, at 2,089,668 to 2,090,129
_01947
CCNA_01948: CCNA_01948 - peptidoglycan-specific endopeptidase, M23 family, at 2,090,363 to 2,091,514
_01948
Position (kb)
2089
2090
2091 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2089.525 kb on + strand at 2089.588 kb on + strand at 2089.596 kb on - strand at 2089.596 kb on - strand at 2089.596 kb on - strand at 2089.596 kb on - strand at 2089.596 kb on - strand at 2089.633 kb on - strand at 2089.635 kb on + strand at 2089.661 kb on + strand at 2089.798 kb on + strand, within CCNA_01947 at 2089.798 kb on + strand, within CCNA_01947 at 2089.806 kb on - strand, within CCNA_01947 at 2089.817 kb on - strand, within CCNA_01947 at 2089.917 kb on - strand, within CCNA_01947 at 2090.011 kb on - strand, within CCNA_01947 at 2090.100 kb on + strand at 2090.100 kb on + strand at 2090.110 kb on + strand at 2090.145 kb on + strand at 2090.208 kb on + strand at 2090.208 kb on + strand at 2090.208 kb on + strand at 2090.208 kb on + strand at 2090.216 kb on - strand at 2090.216 kb on - strand at 2090.243 kb on + strand at 2090.280 kb on + strand at 2090.425 kb on + strand at 2090.455 kb on + strand at 2090.465 kb on - strand at 2090.485 kb on + strand, within CCNA_01948 at 2090.526 kb on - strand, within CCNA_01948 at 2090.526 kb on - strand, within CCNA_01948 at 2090.612 kb on + strand, within CCNA_01948 at 2090.627 kb on + strand, within CCNA_01948 at 2090.635 kb on - strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.636 kb on + strand, within CCNA_01948 at 2090.640 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.644 kb on - strand, within CCNA_01948 at 2090.727 kb on + strand, within CCNA_01948 at 2090.727 kb on + strand, within CCNA_01948 at 2090.735 kb on - strand, within CCNA_01948 at 2090.737 kb on - strand, within CCNA_01948 at 2090.840 kb on + strand, within CCNA_01948 at 2090.848 kb on - strand, within CCNA_01948 at 2090.849 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.864 kb on + strand, within CCNA_01948 at 2090.872 kb on - strand, within CCNA_01948 at 2090.872 kb on - strand, within CCNA_01948 at 2090.921 kb on + strand, within CCNA_01948 at 2090.986 kb on + strand, within CCNA_01948 at 2091.016 kb on - strand, within CCNA_01948 at 2091.016 kb on - strand, within CCNA_01948 at 2091.028 kb on - strand, within CCNA_01948
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,089,525 + +1.8 2,089,588 + -1.6 2,089,596 - -0.6 2,089,596 - +0.2 2,089,596 - +1.1 2,089,596 - -0.4 2,089,596 - +0.1 2,089,633 - -1.5 2,089,635 + -0.4 2,089,661 + -0.5 2,089,798 + CCNA_01947 0.28 -1.7 2,089,798 + CCNA_01947 0.28 -0.4 2,089,806 - CCNA_01947 0.30 +0.6 2,089,817 - CCNA_01947 0.32 -1.2 2,089,917 - CCNA_01947 0.54 -0.5 2,090,011 - CCNA_01947 0.74 -1.9 2,090,100 + +2.1 2,090,100 + +0.1 2,090,110 + -0.3 2,090,145 + +0.7 2,090,208 + -1.4 2,090,208 + -0.4 2,090,208 + -1.4 2,090,208 + -0.2 2,090,216 - +0.2 2,090,216 - -0.0 2,090,243 + -0.9 2,090,280 + -1.3 2,090,425 + +0.1 2,090,455 + +1.4 2,090,465 - +1.4 2,090,485 + CCNA_01948 0.11 +0.5 2,090,526 - CCNA_01948 0.14 +0.5 2,090,526 - CCNA_01948 0.14 -0.4 2,090,612 + CCNA_01948 0.22 +1.6 2,090,627 + CCNA_01948 0.23 -0.1 2,090,635 - CCNA_01948 0.24 -1.7 2,090,636 + CCNA_01948 0.24 +1.2 2,090,636 + CCNA_01948 0.24 +0.6 2,090,636 + CCNA_01948 0.24 +2.1 2,090,640 - CCNA_01948 0.24 -1.5 2,090,644 - CCNA_01948 0.24 -1.6 2,090,644 - CCNA_01948 0.24 -1.0 2,090,644 - CCNA_01948 0.24 -0.8 2,090,727 + CCNA_01948 0.32 -0.7 2,090,727 + CCNA_01948 0.32 -1.3 2,090,735 - CCNA_01948 0.32 +1.0 2,090,737 - CCNA_01948 0.32 +1.5 2,090,840 + CCNA_01948 0.41 -0.4 2,090,848 - CCNA_01948 0.42 +0.3 2,090,849 + CCNA_01948 0.42 +1.1 2,090,864 + CCNA_01948 0.43 +0.1 2,090,864 + CCNA_01948 0.43 -0.3 2,090,864 + CCNA_01948 0.43 +1.0 2,090,872 - CCNA_01948 0.44 -0.6 2,090,872 - CCNA_01948 0.44 +0.4 2,090,921 + CCNA_01948 0.48 -1.1 2,090,986 + CCNA_01948 0.54 -0.8 2,091,016 - CCNA_01948 0.57 +0.1 2,091,016 - CCNA_01948 0.57 -0.4 2,091,028 - CCNA_01948 0.58 +0.8
Or see this region's nucleotide sequence