Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00886 and CCNA_00887 are separated by 182 nucleotides CCNA_00887 and CCNA_00888 are separated by 124 nucleotides CCNA_00888 and CCNA_00889 are separated by 3 nucleotides CCNA_00889 and CCNA_00890 are separated by 90 nucleotides
CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184
_00886
CCNA_00887: CCNA_00887 - hypothetical protein, at 966,367 to 966,831
_00887
CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309
_00888
CCNA_00889: CCNA_00889 - lumazine-binding domain protein, at 967,313 to 967,756
_00889
CCNA_00890: CCNA_00890 - poly(3-hydroxyalkanoate) depolymerase, at 967,847 to 968,767
_00890
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.194 kb on - strand at 966.228 kb on + strand at 966.236 kb on - strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.269 kb on + strand at 966.277 kb on - strand at 966.277 kb on - strand at 966.279 kb on - strand at 966.279 kb on - strand at 966.336 kb on - strand at 966.344 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.368 kb on + strand at 966.376 kb on + strand at 966.386 kb on - strand at 966.396 kb on + strand at 966.396 kb on + strand at 966.454 kb on - strand, within CCNA_00887 at 966.466 kb on - strand, within CCNA_00887 at 966.479 kb on + strand, within CCNA_00887 at 966.512 kb on + strand, within CCNA_00887 at 966.532 kb on + strand, within CCNA_00887 at 966.539 kb on - strand, within CCNA_00887 at 966.609 kb on + strand, within CCNA_00887 at 966.635 kb on - strand, within CCNA_00887 at 966.657 kb on + strand, within CCNA_00887 at 966.690 kb on + strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.704 kb on - strand, within CCNA_00887 at 966.726 kb on + strand, within CCNA_00887 at 966.737 kb on + strand, within CCNA_00887 at 966.763 kb on + strand, within CCNA_00887 at 966.853 kb on + strand at 966.853 kb on + strand at 966.853 kb on + strand at 966.854 kb on + strand at 966.861 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.910 kb on + strand at 966.944 kb on - strand at 966.946 kb on + strand at 966.954 kb on - strand at 966.959 kb on + strand at 967.021 kb on - strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.024 kb on + strand, within CCNA_00888 at 967.030 kb on - strand, within CCNA_00888 at 967.032 kb on - strand, within CCNA_00888 at 967.053 kb on + strand, within CCNA_00888 at 967.066 kb on - strand, within CCNA_00888 at 967.101 kb on + strand, within CCNA_00888 at 967.138 kb on + strand, within CCNA_00888 at 967.154 kb on - strand, within CCNA_00888 at 967.259 kb on - strand, within CCNA_00888 at 967.285 kb on + strand at 967.293 kb on - strand at 967.303 kb on + strand at 967.334 kb on - strand at 967.338 kb on + strand at 967.381 kb on + strand, within CCNA_00889 at 967.488 kb on + strand, within CCNA_00889 at 967.555 kb on - strand, within CCNA_00889 at 967.555 kb on - strand, within CCNA_00889 at 967.566 kb on - strand, within CCNA_00889 at 967.569 kb on + strand, within CCNA_00889 at 967.577 kb on - strand, within CCNA_00889 at 967.587 kb on + strand, within CCNA_00889 at 967.605 kb on - strand, within CCNA_00889 at 967.635 kb on + strand, within CCNA_00889 at 967.666 kb on - strand, within CCNA_00889 at 967.680 kb on + strand, within CCNA_00889 at 967.729 kb on + strand at 967.880 kb on + strand at 967.881 kb on + strand at 967.910 kb on + strand at 967.918 kb on - strand at 967.945 kb on - strand, within CCNA_00890 at 967.978 kb on + strand, within CCNA_00890 at 967.986 kb on - strand, within CCNA_00890 at 967.986 kb on - strand, within CCNA_00890 at 968.008 kb on - strand, within CCNA_00890 at 968.028 kb on - strand, within CCNA_00890 at 968.038 kb on - strand, within CCNA_00890 at 968.040 kb on + strand, within CCNA_00890 at 968.040 kb on + strand, within CCNA_00890 at 968.048 kb on - strand, within CCNA_00890 at 968.055 kb on + strand, within CCNA_00890 at 968.072 kb on - strand, within CCNA_00890 at 968.098 kb on + strand, within CCNA_00890 at 968.098 kb on + strand, within CCNA_00890 at 968.102 kb on + strand, within CCNA_00890 at 968.106 kb on - strand, within CCNA_00890 at 968.106 kb on - strand, within CCNA_00890 at 968.132 kb on + strand, within CCNA_00890 at 968.165 kb on - strand, within CCNA_00890 at 968.168 kb on + strand, within CCNA_00890 at 968.181 kb on - strand, within CCNA_00890 at 968.186 kb on + strand, within CCNA_00890 at 968.191 kb on + strand, within CCNA_00890 at 968.199 kb on - strand, within CCNA_00890 at 968.249 kb on + strand, within CCNA_00890 at 968.249 kb on + strand, within CCNA_00890 at 968.269 kb on + strand, within CCNA_00890 at 968.297 kb on - strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 966,178 + -1.9 966,178 + +1.7 966,178 + -0.8 966,178 + -0.1 966,178 + -0.8 966,186 - +1.1 966,186 - -0.4 966,186 - +1.1 966,194 - -0.8 966,228 + -0.2 966,236 - +0.9 966,238 + -0.2 966,238 + -0.4 966,238 + -0.0 966,238 + -1.2 966,238 + -1.0 966,238 + -0.6 966,238 + -1.1 966,238 + -0.7 966,238 + -1.0 966,238 + +0.7 966,238 + -0.0 966,238 + +0.1 966,246 - -0.8 966,246 - -0.8 966,246 - +0.2 966,246 - +1.2 966,246 - -0.5 966,246 - +2.5 966,254 + -0.1 966,254 + -0.8 966,254 + +0.5 966,262 - +0.8 966,262 - -0.7 966,262 - -0.0 966,262 - +0.1 966,269 + +1.5 966,277 - -0.1 966,277 - +0.3 966,279 - -0.6 966,279 - -0.7 966,336 - -1.0 966,344 - +0.5 966,349 - +0.1 966,349 - -0.8 966,349 - -1.2 966,368 + -0.4 966,376 + -0.1 966,386 - +1.3 966,396 + -0.4 966,396 + -0.3 966,454 - CCNA_00887 0.19 -0.3 966,466 - CCNA_00887 0.21 -0.6 966,479 + CCNA_00887 0.24 +1.9 966,512 + CCNA_00887 0.31 -0.1 966,532 + CCNA_00887 0.35 -1.3 966,539 - CCNA_00887 0.37 -2.3 966,609 + CCNA_00887 0.52 +1.1 966,635 - CCNA_00887 0.58 +1.3 966,657 + CCNA_00887 0.62 -0.4 966,690 + CCNA_00887 0.69 -1.3 966,698 - CCNA_00887 0.71 -1.1 966,698 - CCNA_00887 0.71 -1.4 966,704 - CCNA_00887 0.72 +2.9 966,726 + CCNA_00887 0.77 -0.7 966,737 + CCNA_00887 0.80 +2.3 966,763 + CCNA_00887 0.85 -0.2 966,853 + -0.2 966,853 + -0.8 966,853 + -1.5 966,854 + +1.2 966,861 - -0.6 966,862 - -1.8 966,862 - -1.8 966,862 - +0.1 966,862 - +4.5 966,862 - -0.4 966,862 - +1.5 966,862 - -0.2 966,862 - +0.4 966,877 + +0.1 966,877 + -0.5 966,877 + +0.2 966,877 + +1.1 966,885 - +1.3 966,885 - -0.9 966,885 - +0.5 966,910 + +0.5 966,944 - +0.3 966,946 + +1.0 966,954 - -0.3 966,959 + +1.3 967,021 - CCNA_00888 0.18 -1.0 967,022 + CCNA_00888 0.19 -1.4 967,022 + CCNA_00888 0.19 -0.0 967,024 + CCNA_00888 0.19 -1.7 967,030 - CCNA_00888 0.21 +0.2 967,032 - CCNA_00888 0.21 +0.2 967,053 + CCNA_00888 0.27 -1.3 967,066 - CCNA_00888 0.31 +0.9 967,101 + CCNA_00888 0.41 -0.6 967,138 + CCNA_00888 0.51 +1.1 967,154 - CCNA_00888 0.56 -1.1 967,259 - CCNA_00888 0.86 -1.0 967,285 + -1.7 967,293 - -1.1 967,303 + +1.3 967,334 - +1.1 967,338 + -0.9 967,381 + CCNA_00889 0.15 +0.4 967,488 + CCNA_00889 0.39 -1.7 967,555 - CCNA_00889 0.55 +2.7 967,555 - CCNA_00889 0.55 -0.8 967,566 - CCNA_00889 0.57 -2.1 967,569 + CCNA_00889 0.58 -1.2 967,577 - CCNA_00889 0.59 -1.2 967,587 + CCNA_00889 0.62 +0.4 967,605 - CCNA_00889 0.66 -0.8 967,635 + CCNA_00889 0.73 +0.3 967,666 - CCNA_00889 0.80 +0.5 967,680 + CCNA_00889 0.83 -0.6 967,729 + +1.4 967,880 + -0.0 967,881 + +1.0 967,910 + +0.3 967,918 - +0.7 967,945 - CCNA_00890 0.11 +1.8 967,978 + CCNA_00890 0.14 -0.8 967,986 - CCNA_00890 0.15 -0.5 967,986 - CCNA_00890 0.15 -1.0 968,008 - CCNA_00890 0.17 +0.1 968,028 - CCNA_00890 0.20 -0.0 968,038 - CCNA_00890 0.21 +0.9 968,040 + CCNA_00890 0.21 +0.1 968,040 + CCNA_00890 0.21 +0.5 968,048 - CCNA_00890 0.22 -1.2 968,055 + CCNA_00890 0.23 +0.6 968,072 - CCNA_00890 0.24 -0.0 968,098 + CCNA_00890 0.27 -0.5 968,098 + CCNA_00890 0.27 +1.1 968,102 + CCNA_00890 0.28 -1.0 968,106 - CCNA_00890 0.28 -1.6 968,106 - CCNA_00890 0.28 +0.7 968,132 + CCNA_00890 0.31 -0.3 968,165 - CCNA_00890 0.35 -0.6 968,168 + CCNA_00890 0.35 +0.9 968,181 - CCNA_00890 0.36 +1.3 968,186 + CCNA_00890 0.37 -0.8 968,191 + CCNA_00890 0.37 +1.7 968,199 - CCNA_00890 0.38 -1.6 968,249 + CCNA_00890 0.44 -0.3 968,249 + CCNA_00890 0.44 +0.8 968,269 + CCNA_00890 0.46 -1.5 968,297 - CCNA_00890 0.49 +0.1 968,307 + CCNA_00890 0.50 +1.0 968,307 + CCNA_00890 0.50 +0.2 968,307 + CCNA_00890 0.50 -0.1
Or see this region's nucleotide sequence