Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00484

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00483 and CCNA_00484 are separated by 89 nucleotidesCCNA_00484 and CCNA_00485 are separated by 98 nucleotides CCNA_00483: CCNA_00483 - Zn-dependent hydrolase, glyoxalase II family, at 499,379 to 500,224 _00483 CCNA_00484: CCNA_00484 - hypothetical protein, at 500,314 to 501,015 _00484 CCNA_00485: CCNA_00485 - ribosomal large subunit pseudouridine synthase D, at 501,114 to 502,142 _00485 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 499.385 kb on - strandat 499.385 kb on - strandat 499.385 kb on - strandat 499.480 kb on + strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.488 kb on - strand, within CCNA_00483at 499.499 kb on + strand, within CCNA_00483at 499.507 kb on - strand, within CCNA_00483at 499.509 kb on + strand, within CCNA_00483at 499.517 kb on - strand, within CCNA_00483at 499.519 kb on + strand, within CCNA_00483at 499.522 kb on - strand, within CCNA_00483at 499.522 kb on - strand, within CCNA_00483at 499.532 kb on - strand, within CCNA_00483at 499.675 kb on - strand, within CCNA_00483at 499.676 kb on - strand, within CCNA_00483at 499.676 kb on - strand, within CCNA_00483at 499.676 kb on - strand, within CCNA_00483at 499.708 kb on + strand, within CCNA_00483at 499.708 kb on + strand, within CCNA_00483at 499.717 kb on - strand, within CCNA_00483at 499.738 kb on + strand, within CCNA_00483at 499.751 kb on - strand, within CCNA_00483at 499.777 kb on - strand, within CCNA_00483at 499.799 kb on - strand, within CCNA_00483at 499.818 kb on - strand, within CCNA_00483at 499.824 kb on - strand, within CCNA_00483at 499.895 kb on - strand, within CCNA_00483at 499.989 kb on + strand, within CCNA_00483at 499.989 kb on + strand, within CCNA_00483at 499.997 kb on - strand, within CCNA_00483at 499.997 kb on - strand, within CCNA_00483at 500.002 kb on - strand, within CCNA_00483at 500.032 kb on - strand, within CCNA_00483at 500.035 kb on + strand, within CCNA_00483at 500.043 kb on - strand, within CCNA_00483at 500.092 kb on - strand, within CCNA_00483at 500.140 kb on + strandat 500.216 kb on - strandat 500.228 kb on + strandat 500.270 kb on + strandat 500.343 kb on + strandat 500.363 kb on + strandat 500.363 kb on + strandat 500.364 kb on + strandat 500.371 kb on - strandat 500.374 kb on + strandat 500.434 kb on + strand, within CCNA_00484at 500.441 kb on + strandat 500.455 kb on + strand, within CCNA_00484at 500.503 kb on + strand, within CCNA_00484at 500.521 kb on + strand, within CCNA_00484at 500.521 kb on + strand, within CCNA_00484at 500.529 kb on - strand, within CCNA_00484at 500.553 kb on - strand, within CCNA_00484at 500.614 kb on + strand, within CCNA_00484at 500.716 kb on + strand, within CCNA_00484at 500.724 kb on - strand, within CCNA_00484at 500.754 kb on - strand, within CCNA_00484at 500.777 kb on + strand, within CCNA_00484at 500.825 kb on - strand, within CCNA_00484at 500.825 kb on - strand, within CCNA_00484at 500.849 kb on + strand, within CCNA_00484at 500.856 kb on - strand, within CCNA_00484at 500.902 kb on + strand, within CCNA_00484at 500.902 kb on + strand, within CCNA_00484at 500.910 kb on - strand, within CCNA_00484at 500.910 kb on - strand, within CCNA_00484at 500.939 kb on - strand, within CCNA_00484at 500.979 kb on - strandat 501.002 kb on + strandat 501.010 kb on - strandat 501.046 kb on - strandat 501.050 kb on + strandat 501.054 kb on - strandat 501.059 kb on - strandat 501.073 kb on - strandat 501.096 kb on + strandat 501.103 kb on - strandat 501.103 kb on - strandat 501.103 kb on - strandat 501.104 kb on - strandat 501.120 kb on - strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.161 kb on + strandat 501.179 kb on + strandat 501.207 kb on + strandat 501.207 kb on + strandat 501.207 kb on + strandat 501.207 kb on + strandat 501.208 kb on - strandat 501.215 kb on + strandat 501.215 kb on - strandat 501.217 kb on + strand, within CCNA_00485at 501.234 kb on + strand, within CCNA_00485at 501.263 kb on + strand, within CCNA_00485at 501.305 kb on + strand, within CCNA_00485at 501.305 kb on + strand, within CCNA_00485at 501.305 kb on + strand, within CCNA_00485at 501.345 kb on + strand, within CCNA_00485at 501.345 kb on + strand, within CCNA_00485at 501.345 kb on + strand, within CCNA_00485at 501.409 kb on + strand, within CCNA_00485at 501.419 kb on - strand, within CCNA_00485at 501.427 kb on + strand, within CCNA_00485at 501.427 kb on + strand, within CCNA_00485at 501.429 kb on - strand, within CCNA_00485at 501.430 kb on - strand, within CCNA_00485at 501.435 kb on - strand, within CCNA_00485at 501.435 kb on - strand, within CCNA_00485at 501.435 kb on - strand, within CCNA_00485at 501.435 kb on - strand, within CCNA_00485at 501.440 kb on - strand, within CCNA_00485at 501.440 kb on - strand, within CCNA_00485at 501.488 kb on + strand, within CCNA_00485at 501.496 kb on - strand, within CCNA_00485at 501.511 kb on + strand, within CCNA_00485at 501.513 kb on - strand, within CCNA_00485at 501.549 kb on + strand, within CCNA_00485at 501.549 kb on + strand, within CCNA_00485at 501.549 kb on + strand, within CCNA_00485at 501.549 kb on + strand, within CCNA_00485at 501.557 kb on - strand, within CCNA_00485at 501.557 kb on - strand, within CCNA_00485at 501.557 kb on - strand, within CCNA_00485at 501.557 kb on - strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.559 kb on + strand, within CCNA_00485at 501.567 kb on - strand, within CCNA_00485at 501.567 kb on - strand, within CCNA_00485at 501.567 kb on - strand, within CCNA_00485at 501.567 kb on - strand, within CCNA_00485at 501.591 kb on - strand, within CCNA_00485at 501.591 kb on - strand, within CCNA_00485at 501.601 kb on - strand, within CCNA_00485at 501.606 kb on + strand, within CCNA_00485at 501.641 kb on + strand, within CCNA_00485at 501.641 kb on + strand, within CCNA_00485at 501.649 kb on - strand, within CCNA_00485at 501.649 kb on - strand, within CCNA_00485at 501.673 kb on + strand, within CCNA_00485at 501.673 kb on + strand, within CCNA_00485at 501.681 kb on - strand, within CCNA_00485at 501.681 kb on - strand, within CCNA_00485at 501.681 kb on - strand, within CCNA_00485at 501.715 kb on + strand, within CCNA_00485at 501.731 kb on - strand, within CCNA_00485at 501.733 kb on + strand, within CCNA_00485at 501.733 kb on + strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.741 kb on - strand, within CCNA_00485at 501.748 kb on + strand, within CCNA_00485at 501.790 kb on + strand, within CCNA_00485at 501.795 kb on + strand, within CCNA_00485at 501.795 kb on + strand, within CCNA_00485at 501.798 kb on - strand, within CCNA_00485at 501.802 kb on + strand, within CCNA_00485at 501.817 kb on + strand, within CCNA_00485at 501.817 kb on - strand, within CCNA_00485at 501.837 kb on + strand, within CCNA_00485at 501.881 kb on + strand, within CCNA_00485at 501.887 kb on + strand, within CCNA_00485at 501.891 kb on + strand, within CCNA_00485at 501.929 kb on - strand, within CCNA_00485at 501.939 kb on + strand, within CCNA_00485at 501.945 kb on + strand, within CCNA_00485at 501.963 kb on + strand, within CCNA_00485at 501.970 kb on + strand, within CCNA_00485at 501.972 kb on - strand, within CCNA_00485at 501.994 kb on + strand, within CCNA_00485at 502.015 kb on + strand, within CCNA_00485

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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499,385 - -0.3
499,385 - +0.8
499,385 - -0.2
499,480 + CCNA_00483 0.12 +0.3
499,480 + CCNA_00483 0.12 -0.4
499,480 + CCNA_00483 0.12 -0.9
499,480 + CCNA_00483 0.12 +0.2
499,480 + CCNA_00483 0.12 -0.2
499,480 + CCNA_00483 0.12 -0.3
499,488 - CCNA_00483 0.13 +0.6
499,499 + CCNA_00483 0.14 +1.4
499,507 - CCNA_00483 0.15 -0.0
499,509 + CCNA_00483 0.15 +1.3
499,517 - CCNA_00483 0.16 -0.1
499,519 + CCNA_00483 0.17 -0.6
499,522 - CCNA_00483 0.17 -0.7
499,522 - CCNA_00483 0.17 -0.7
499,532 - CCNA_00483 0.18 -0.1
499,675 - CCNA_00483 0.35 -0.8
499,676 - CCNA_00483 0.35 -0.1
499,676 - CCNA_00483 0.35 -0.0
499,676 - CCNA_00483 0.35 +0.2
499,708 + CCNA_00483 0.39 +0.5
499,708 + CCNA_00483 0.39 +0.8
499,717 - CCNA_00483 0.40 -0.5
499,738 + CCNA_00483 0.42 -0.8
499,751 - CCNA_00483 0.44 -0.8
499,777 - CCNA_00483 0.47 -0.2
499,799 - CCNA_00483 0.50 -0.5
499,818 - CCNA_00483 0.52 -2.4
499,824 - CCNA_00483 0.53 -0.0
499,895 - CCNA_00483 0.61 -0.6
499,989 + CCNA_00483 0.72 -0.0
499,989 + CCNA_00483 0.72 -1.7
499,997 - CCNA_00483 0.73 -0.2
499,997 - CCNA_00483 0.73 +0.2
500,002 - CCNA_00483 0.74 -1.3
500,032 - CCNA_00483 0.77 -1.8
500,035 + CCNA_00483 0.78 -0.2
500,043 - CCNA_00483 0.78 +1.4
500,092 - CCNA_00483 0.84 -0.4
500,140 + +0.7
500,216 - +1.4
500,228 + +1.7
500,270 + +1.4
500,343 + +2.8
500,363 + -0.2
500,363 + +1.0
500,364 + +1.6
500,371 - -0.8
500,374 + +0.3
500,434 + CCNA_00484 0.17 +1.1
500,441 + +2.0
500,455 + CCNA_00484 0.20 -1.4
500,503 + CCNA_00484 0.27 +0.2
500,521 + CCNA_00484 0.29 -0.5
500,521 + CCNA_00484 0.29 -0.8
500,529 - CCNA_00484 0.31 +0.5
500,553 - CCNA_00484 0.34 +1.4
500,614 + CCNA_00484 0.43 -1.1
500,716 + CCNA_00484 0.57 -2.1
500,724 - CCNA_00484 0.58 +5.5
500,754 - CCNA_00484 0.63 +1.6
500,777 + CCNA_00484 0.66 +1.0
500,825 - CCNA_00484 0.73 +0.2
500,825 - CCNA_00484 0.73 +2.4
500,849 + CCNA_00484 0.76 -0.5
500,856 - CCNA_00484 0.77 -1.6
500,902 + CCNA_00484 0.84 -2.1
500,902 + CCNA_00484 0.84 -1.3
500,910 - CCNA_00484 0.85 -1.0
500,910 - CCNA_00484 0.85 -0.7
500,939 - CCNA_00484 0.89 -0.5
500,979 - -0.5
501,002 + -0.2
501,010 - +0.4
501,046 - -1.9
501,050 + -0.6
501,054 - -0.3
501,059 - +0.4
501,073 - -0.9
501,096 + +2.2
501,103 - -1.1
501,103 - -1.5
501,103 - -1.4
501,104 - -1.0
501,120 - -0.6
501,134 + -1.1
501,134 + -0.2
501,134 + -0.7
501,134 + +0.9
501,134 + -2.7
501,134 + +0.8
501,134 + -0.8
501,134 + -1.2
501,142 - -1.0
501,142 - +0.7
501,142 - -0.8
501,142 - +0.4
501,142 - +0.3
501,142 - -1.6
501,142 - -1.2
501,142 - -0.5
501,142 - +0.0
501,142 - +1.4
501,142 - -0.2
501,161 + -1.0
501,179 + -1.5
501,207 + -0.0
501,207 + -1.1
501,207 + -0.4
501,207 + +1.2
501,208 - +0.4
501,215 + -0.2
501,215 - +0.7
501,217 + CCNA_00485 0.10 +0.6
501,234 + CCNA_00485 0.12 -0.5
501,263 + CCNA_00485 0.14 +0.2
501,305 + CCNA_00485 0.19 +0.9
501,305 + CCNA_00485 0.19 -0.0
501,305 + CCNA_00485 0.19 -1.1
501,345 + CCNA_00485 0.22 -1.2
501,345 + CCNA_00485 0.22 -0.3
501,345 + CCNA_00485 0.22 +1.3
501,409 + CCNA_00485 0.29 -0.2
501,419 - CCNA_00485 0.30 -1.6
501,427 + CCNA_00485 0.30 +0.5
501,427 + CCNA_00485 0.30 +0.7
501,429 - CCNA_00485 0.31 -1.0
501,430 - CCNA_00485 0.31 -0.0
501,435 - CCNA_00485 0.31 -0.2
501,435 - CCNA_00485 0.31 -1.5
501,435 - CCNA_00485 0.31 +0.5
501,435 - CCNA_00485 0.31 -2.7
501,440 - CCNA_00485 0.32 -1.3
501,440 - CCNA_00485 0.32 +0.1
501,488 + CCNA_00485 0.36 -1.1
501,496 - CCNA_00485 0.37 -0.7
501,511 + CCNA_00485 0.39 +0.5
501,513 - CCNA_00485 0.39 -0.5
501,549 + CCNA_00485 0.42 +0.9
501,549 + CCNA_00485 0.42 +1.7
501,549 + CCNA_00485 0.42 +1.8
501,549 + CCNA_00485 0.42 -1.2
501,557 - CCNA_00485 0.43 -0.5
501,557 - CCNA_00485 0.43 +0.3
501,557 - CCNA_00485 0.43 +1.2
501,557 - CCNA_00485 0.43 -0.9
501,559 + CCNA_00485 0.43 -1.0
501,559 + CCNA_00485 0.43 +0.1
501,559 + CCNA_00485 0.43 +0.8
501,559 + CCNA_00485 0.43 +2.8
501,559 + CCNA_00485 0.43 -0.6
501,559 + CCNA_00485 0.43 +1.0
501,559 + CCNA_00485 0.43 -0.2
501,559 + CCNA_00485 0.43 -0.4
501,559 + CCNA_00485 0.43 +0.4
501,559 + CCNA_00485 0.43 +1.1
501,567 - CCNA_00485 0.44 -1.1
501,567 - CCNA_00485 0.44 +1.3
501,567 - CCNA_00485 0.44 -2.0
501,567 - CCNA_00485 0.44 -2.0
501,591 - CCNA_00485 0.46 -1.6
501,591 - CCNA_00485 0.46 -0.3
501,601 - CCNA_00485 0.47 -0.8
501,606 + CCNA_00485 0.48 -0.3
501,641 + CCNA_00485 0.51 -1.9
501,641 + CCNA_00485 0.51 -0.3
501,649 - CCNA_00485 0.52 -0.3
501,649 - CCNA_00485 0.52 -1.2
501,673 + CCNA_00485 0.54 -0.7
501,673 + CCNA_00485 0.54 +1.9
501,681 - CCNA_00485 0.55 -0.6
501,681 - CCNA_00485 0.55 +1.1
501,681 - CCNA_00485 0.55 -2.2
501,715 + CCNA_00485 0.58 -0.3
501,731 - CCNA_00485 0.60 -0.7
501,733 + CCNA_00485 0.60 +0.5
501,733 + CCNA_00485 0.60 +2.4
501,741 - CCNA_00485 0.61 -1.0
501,741 - CCNA_00485 0.61 +0.5
501,741 - CCNA_00485 0.61 -0.2
501,741 - CCNA_00485 0.61 -1.2
501,741 - CCNA_00485 0.61 -1.8
501,741 - CCNA_00485 0.61 -1.9
501,748 + CCNA_00485 0.62 -0.5
501,790 + CCNA_00485 0.66 +0.1
501,795 + CCNA_00485 0.66 +0.2
501,795 + CCNA_00485 0.66 -2.2
501,798 - CCNA_00485 0.66 -0.1
501,802 + CCNA_00485 0.67 -0.5
501,817 + CCNA_00485 0.68 -0.1
501,817 - CCNA_00485 0.68 +0.9
501,837 + CCNA_00485 0.70 +0.4
501,881 + CCNA_00485 0.75 -0.8
501,887 + CCNA_00485 0.75 +1.4
501,891 + CCNA_00485 0.76 +0.5
501,929 - CCNA_00485 0.79 -2.2
501,939 + CCNA_00485 0.80 -1.0
501,945 + CCNA_00485 0.81 -1.1
501,963 + CCNA_00485 0.83 +0.4
501,970 + CCNA_00485 0.83 -0.4
501,972 - CCNA_00485 0.83 -0.3
501,994 + CCNA_00485 0.86 +1.4
502,015 + CCNA_00485 0.88 +0.3

Or see this region's nucleotide sequence