Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00387

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00385 and CCNA_00386 overlap by 4 nucleotidesCCNA_00386 and CCNA_00387 are separated by 129 nucleotidesCCNA_00387 and CCNA_00388 are separated by 127 nucleotides CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861 _00385 CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445 _00386 CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997 _00387 CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006 _00388 Position (kb) 403 404Strain fitness (log2 ratio) -2 -1 0 1 2 3at 402.582 kb on - strand, within CCNA_00385at 402.588 kb on - strand, within CCNA_00385at 402.588 kb on - strand, within CCNA_00385at 402.601 kb on + strand, within CCNA_00385at 402.716 kb on + strand, within CCNA_00385at 402.727 kb on + strand, within CCNA_00385at 402.730 kb on - strandat 402.734 kb on + strandat 402.739 kb on + strandat 402.759 kb on - strandat 402.770 kb on + strandat 402.770 kb on + strandat 402.770 kb on + strandat 402.772 kb on + strandat 402.778 kb on - strandat 402.779 kb on + strandat 402.804 kb on + strandat 402.806 kb on + strandat 402.812 kb on - strandat 402.819 kb on + strandat 402.840 kb on - strandat 402.841 kb on + strandat 402.845 kb on - strandat 402.867 kb on + strandat 402.867 kb on + strandat 402.867 kb on + strandat 402.874 kb on + strandat 402.875 kb on - strandat 402.875 kb on - strandat 402.875 kb on - strandat 402.875 kb on - strandat 402.880 kb on - strandat 402.898 kb on + strandat 402.906 kb on - strandat 402.923 kb on + strand, within CCNA_00386at 402.931 kb on - strand, within CCNA_00386at 402.935 kb on + strand, within CCNA_00386at 402.943 kb on + strand, within CCNA_00386at 402.956 kb on - strand, within CCNA_00386at 402.976 kb on + strand, within CCNA_00386at 402.991 kb on + strand, within CCNA_00386at 402.991 kb on + strand, within CCNA_00386at 402.999 kb on - strand, within CCNA_00386at 402.999 kb on - strand, within CCNA_00386at 403.000 kb on - strand, within CCNA_00386at 403.037 kb on - strand, within CCNA_00386at 403.040 kb on + strand, within CCNA_00386at 403.070 kb on + strand, within CCNA_00386at 403.094 kb on - strand, within CCNA_00386at 403.098 kb on + strand, within CCNA_00386at 403.118 kb on + strand, within CCNA_00386at 403.123 kb on + strand, within CCNA_00386at 403.140 kb on + strand, within CCNA_00386at 403.177 kb on + strand, within CCNA_00386at 403.181 kb on - strand, within CCNA_00386at 403.185 kb on - strand, within CCNA_00386at 403.185 kb on - strand, within CCNA_00386at 403.275 kb on - strand, within CCNA_00386at 403.345 kb on + strand, within CCNA_00386at 403.348 kb on - strand, within CCNA_00386at 403.372 kb on - strand, within CCNA_00386at 403.395 kb on - strandat 403.408 kb on - strandat 403.457 kb on + strandat 403.465 kb on - strandat 403.549 kb on - strandat 403.550 kb on + strandat 403.550 kb on + strandat 403.558 kb on - strandat 403.583 kb on + strandat 403.583 kb on + strandat 403.583 kb on + strandat 403.591 kb on - strandat 403.591 kb on - strandat 403.639 kb on + strand, within CCNA_00387at 403.639 kb on + strand, within CCNA_00387at 403.639 kb on + strand, within CCNA_00387at 403.639 kb on + strand, within CCNA_00387at 403.639 kb on + strand, within CCNA_00387at 403.644 kb on + strand, within CCNA_00387at 403.654 kb on + strand, within CCNA_00387at 403.657 kb on - strand, within CCNA_00387at 403.679 kb on + strand, within CCNA_00387at 403.809 kb on + strand, within CCNA_00387at 403.827 kb on + strand, within CCNA_00387at 403.842 kb on + strand, within CCNA_00387at 403.850 kb on - strand, within CCNA_00387at 403.866 kb on + strand, within CCNA_00387at 403.930 kb on + strand, within CCNA_00387at 403.965 kb on - strandat 403.976 kb on - strandat 403.997 kb on - strandat 404.029 kb on - strandat 404.030 kb on - strandat 404.125 kb on - strandat 404.148 kb on - strandat 404.193 kb on - strandat 404.199 kb on + strandat 404.214 kb on + strand, within CCNA_00388at 404.222 kb on - strand, within CCNA_00388at 404.230 kb on - strand, within CCNA_00388at 404.230 kb on - strand, within CCNA_00388at 404.230 kb on - strand, within CCNA_00388at 404.247 kb on + strand, within CCNA_00388at 404.290 kb on + strand, within CCNA_00388at 404.290 kb on + strand, within CCNA_00388at 404.305 kb on - strand, within CCNA_00388at 404.318 kb on + strand, within CCNA_00388at 404.346 kb on + strand, within CCNA_00388at 404.349 kb on - strand, within CCNA_00388at 404.374 kb on - strand, within CCNA_00388at 404.374 kb on - strand, within CCNA_00388at 404.374 kb on - strand, within CCNA_00388at 404.407 kb on - strand, within CCNA_00388at 404.415 kb on - strand, within CCNA_00388at 404.415 kb on - strand, within CCNA_00388at 404.416 kb on - strand, within CCNA_00388at 404.435 kb on - strand, within CCNA_00388at 404.436 kb on - strand, within CCNA_00388at 404.438 kb on + strand, within CCNA_00388at 404.446 kb on - strand, within CCNA_00388at 404.455 kb on - strand, within CCNA_00388at 404.482 kb on - strand, within CCNA_00388at 404.564 kb on + strand, within CCNA_00388at 404.608 kb on - strand, within CCNA_00388at 404.619 kb on + strand, within CCNA_00388at 404.619 kb on + strand, within CCNA_00388at 404.619 kb on + strand, within CCNA_00388at 404.619 kb on + strand, within CCNA_00388at 404.619 kb on + strand, within CCNA_00388at 404.627 kb on - strand, within CCNA_00388at 404.627 kb on - strand, within CCNA_00388at 404.627 kb on - strand, within CCNA_00388at 404.640 kb on + strand, within CCNA_00388at 404.640 kb on + strand, within CCNA_00388at 404.648 kb on - strand, within CCNA_00388at 404.648 kb on - strand, within CCNA_00388at 404.648 kb on - strand, within CCNA_00388at 404.671 kb on + strand, within CCNA_00388at 404.674 kb on + strand, within CCNA_00388at 404.679 kb on - strand, within CCNA_00388at 404.679 kb on - strand, within CCNA_00388at 404.696 kb on - strand, within CCNA_00388at 404.697 kb on - strand, within CCNA_00388at 404.697 kb on - strand, within CCNA_00388at 404.704 kb on - strand, within CCNA_00388at 404.704 kb on - strand, within CCNA_00388at 404.704 kb on - strand, within CCNA_00388at 404.714 kb on - strand, within CCNA_00388at 404.722 kb on + strand, within CCNA_00388at 404.728 kb on + strand, within CCNA_00388at 404.733 kb on + strand, within CCNA_00388at 404.752 kb on - strand, within CCNA_00388at 404.785 kb on - strand, within CCNA_00388at 404.812 kb on + strand, within CCNA_00388at 404.858 kb on + strand, within CCNA_00388at 404.907 kb on + strand, within CCNA_00388at 404.912 kb on + strand, within CCNA_00388at 404.936 kb on + strandat 404.943 kb on - strandat 404.953 kb on - strandat 404.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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402,582 - CCNA_00385 0.79 +0.1
402,588 - CCNA_00385 0.79 -0.2
402,588 - CCNA_00385 0.79 +3.4
402,601 + CCNA_00385 0.80 +3.4
402,716 + CCNA_00385 0.89 +0.4
402,727 + CCNA_00385 0.90 -1.2
402,730 - +0.6
402,734 + -1.8
402,739 + +1.3
402,759 - +1.4
402,770 + -0.8
402,770 + +1.3
402,770 + +2.6
402,772 + -0.5
402,778 - -0.5
402,779 + +1.9
402,804 + -0.2
402,806 + -0.2
402,812 - -1.0
402,819 + +0.2
402,840 - -0.7
402,841 + -1.9
402,845 - -0.3
402,867 + -1.0
402,867 + +1.6
402,867 + +0.8
402,874 + +1.0
402,875 - +1.1
402,875 - -0.6
402,875 - +0.0
402,875 - +0.5
402,880 - +1.1
402,898 + -2.0
402,906 - +0.3
402,923 + CCNA_00386 0.11 +0.5
402,931 - CCNA_00386 0.12 -0.0
402,935 + CCNA_00386 0.13 -0.2
402,943 + CCNA_00386 0.14 +1.6
402,956 - CCNA_00386 0.17 -1.2
402,976 + CCNA_00386 0.20 -0.3
402,991 + CCNA_00386 0.23 -2.0
402,991 + CCNA_00386 0.23 -1.1
402,999 - CCNA_00386 0.24 -1.6
402,999 - CCNA_00386 0.24 -0.9
403,000 - CCNA_00386 0.24 -1.0
403,037 - CCNA_00386 0.30 -0.7
403,040 + CCNA_00386 0.31 -0.0
403,070 + CCNA_00386 0.36 -0.9
403,094 - CCNA_00386 0.40 +0.3
403,098 + CCNA_00386 0.41 +0.6
403,118 + CCNA_00386 0.44 -1.0
403,123 + CCNA_00386 0.45 -0.9
403,140 + CCNA_00386 0.48 +1.1
403,177 + CCNA_00386 0.54 -0.8
403,181 - CCNA_00386 0.55 -0.4
403,185 - CCNA_00386 0.56 -1.2
403,185 - CCNA_00386 0.56 -2.1
403,275 - CCNA_00386 0.71 +0.3
403,345 + CCNA_00386 0.83 -1.1
403,348 - CCNA_00386 0.83 -1.0
403,372 - CCNA_00386 0.87 -0.3
403,395 - -0.5
403,408 - -1.0
403,457 + -1.1
403,465 - +1.4
403,549 - -0.4
403,550 + -0.3
403,550 + -1.8
403,558 - +1.5
403,583 + +1.4
403,583 + -1.8
403,583 + +1.1
403,591 - -0.7
403,591 - +0.8
403,639 + CCNA_00387 0.15 -0.1
403,639 + CCNA_00387 0.15 +0.1
403,639 + CCNA_00387 0.15 -1.5
403,639 + CCNA_00387 0.15 -0.4
403,639 + CCNA_00387 0.15 -0.7
403,644 + CCNA_00387 0.16 -2.4
403,654 + CCNA_00387 0.19 -0.5
403,657 - CCNA_00387 0.19 -0.2
403,679 + CCNA_00387 0.25 -0.8
403,809 + CCNA_00387 0.55 -1.6
403,827 + CCNA_00387 0.60 -0.3
403,842 + CCNA_00387 0.63 -0.2
403,850 - CCNA_00387 0.65 -0.9
403,866 + CCNA_00387 0.69 -1.2
403,930 + CCNA_00387 0.84 -0.8
403,965 - +1.8
403,976 - -0.5
403,997 - -0.4
404,029 - -0.2
404,030 - -0.6
404,125 - -1.1
404,148 - +0.0
404,193 - -0.8
404,199 + -1.0
404,214 + CCNA_00388 0.10 +0.5
404,222 - CCNA_00388 0.11 -0.6
404,230 - CCNA_00388 0.12 +0.3
404,230 - CCNA_00388 0.12 +0.4
404,230 - CCNA_00388 0.12 +0.0
404,247 + CCNA_00388 0.14 -2.1
404,290 + CCNA_00388 0.19 +1.0
404,290 + CCNA_00388 0.19 +1.1
404,305 - CCNA_00388 0.20 -0.3
404,318 + CCNA_00388 0.22 +0.7
404,346 + CCNA_00388 0.25 +0.3
404,349 - CCNA_00388 0.25 -0.2
404,374 - CCNA_00388 0.28 -0.1
404,374 - CCNA_00388 0.28 +1.0
404,374 - CCNA_00388 0.28 +0.2
404,407 - CCNA_00388 0.32 -0.9
404,415 - CCNA_00388 0.33 -1.0
404,415 - CCNA_00388 0.33 +0.2
404,416 - CCNA_00388 0.33 +0.2
404,435 - CCNA_00388 0.35 +0.1
404,436 - CCNA_00388 0.35 -0.4
404,438 + CCNA_00388 0.35 -0.1
404,446 - CCNA_00388 0.36 +0.5
404,455 - CCNA_00388 0.37 +0.5
404,482 - CCNA_00388 0.40 -0.4
404,564 + CCNA_00388 0.50 -2.4
404,608 - CCNA_00388 0.55 -0.9
404,619 + CCNA_00388 0.56 +1.0
404,619 + CCNA_00388 0.56 +0.6
404,619 + CCNA_00388 0.56 +0.1
404,619 + CCNA_00388 0.56 -2.0
404,619 + CCNA_00388 0.56 -2.1
404,627 - CCNA_00388 0.57 +0.5
404,627 - CCNA_00388 0.57 -0.5
404,627 - CCNA_00388 0.57 +0.3
404,640 + CCNA_00388 0.58 -0.7
404,640 + CCNA_00388 0.58 +2.4
404,648 - CCNA_00388 0.59 -0.4
404,648 - CCNA_00388 0.59 +2.1
404,648 - CCNA_00388 0.59 +0.3
404,671 + CCNA_00388 0.62 -1.6
404,674 + CCNA_00388 0.62 -0.8
404,679 - CCNA_00388 0.63 -1.1
404,679 - CCNA_00388 0.63 +0.5
404,696 - CCNA_00388 0.65 +0.1
404,697 - CCNA_00388 0.65 +2.4
404,697 - CCNA_00388 0.65 -0.1
404,704 - CCNA_00388 0.66 -0.1
404,704 - CCNA_00388 0.66 -0.3
404,704 - CCNA_00388 0.66 -0.1
404,714 - CCNA_00388 0.67 +0.6
404,722 + CCNA_00388 0.68 -0.0
404,728 + CCNA_00388 0.68 +0.4
404,733 + CCNA_00388 0.69 -0.7
404,752 - CCNA_00388 0.71 -2.5
404,785 - CCNA_00388 0.75 +0.1
404,812 + CCNA_00388 0.78 -1.0
404,858 + CCNA_00388 0.83 +0.0
404,907 + CCNA_00388 0.89 +0.1
404,912 + CCNA_00388 0.89 +1.0
404,936 + -0.3
404,943 - +0.2
404,953 - -2.5
404,968 - -0.6

Or see this region's nucleotide sequence