Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28525 and AO353_28530 are separated by 23 nucleotides AO353_28530 and AO353_28535 are separated by 294 nucleotides
AO353_28525: AO353_28525 - oxidoreductase, at 6,215,557 to 6,216,576
_28525
AO353_28530: AO353_28530 - diguanylate cyclase, at 6,216,600 to 6,218,075
_28530
AO353_28535: AO353_28535 - AraC family transcriptional regulator, at 6,218,370 to 6,219,239
_28535
Position (kb)
6216
6217
6218
6219 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.800 kb on + strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.801 kb on - strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.875 kb on + strand, within AO353_28525 at 6215.876 kb on - strand, within AO353_28525 at 6215.876 kb on - strand, within AO353_28525 at 6215.876 kb on - strand, within AO353_28525 at 6215.876 kb on - strand, within AO353_28525 at 6216.125 kb on + strand, within AO353_28525 at 6216.125 kb on + strand, within AO353_28525 at 6216.126 kb on - strand, within AO353_28525 at 6216.126 kb on - strand, within AO353_28525 at 6216.126 kb on - strand, within AO353_28525 at 6216.126 kb on - strand, within AO353_28525 at 6216.147 kb on + strand, within AO353_28525 at 6216.147 kb on + strand, within AO353_28525 at 6216.147 kb on + strand, within AO353_28525 at 6216.148 kb on - strand, within AO353_28525 at 6216.148 kb on - strand at 6216.308 kb on + strand, within AO353_28525 at 6216.309 kb on - strand, within AO353_28525 at 6216.355 kb on + strand, within AO353_28525 at 6216.356 kb on - strand, within AO353_28525 at 6216.382 kb on + strand, within AO353_28525 at 6216.382 kb on + strand, within AO353_28525 at 6216.382 kb on + strand, within AO353_28525 at 6216.382 kb on + strand, within AO353_28525 at 6216.383 kb on - strand, within AO353_28525 at 6216.670 kb on + strand at 6216.671 kb on - strand at 6216.671 kb on - strand at 6216.724 kb on + strand at 6216.724 kb on + strand at 6216.724 kb on + strand at 6216.991 kb on + strand, within AO353_28530 at 6216.991 kb on + strand, within AO353_28530 at 6216.992 kb on - strand, within AO353_28530 at 6216.992 kb on - strand, within AO353_28530 at 6217.148 kb on + strand, within AO353_28530 at 6217.163 kb on + strand, within AO353_28530 at 6217.163 kb on + strand, within AO353_28530 at 6217.163 kb on + strand, within AO353_28530 at 6217.163 kb on + strand, within AO353_28530 at 6217.163 kb on + strand, within AO353_28530 at 6217.164 kb on - strand, within AO353_28530 at 6217.164 kb on - strand, within AO353_28530 at 6217.372 kb on + strand, within AO353_28530 at 6217.439 kb on - strand, within AO353_28530 at 6217.449 kb on + strand, within AO353_28530 at 6217.819 kb on + strand, within AO353_28530 at 6217.820 kb on - strand, within AO353_28530 at 6217.820 kb on - strand, within AO353_28530 at 6217.941 kb on + strand at 6217.941 kb on + strand at 6217.975 kb on + strand at 6217.975 kb on + strand at 6217.976 kb on - strand at 6217.976 kb on - strand at 6217.976 kb on - strand at 6217.976 kb on - strand at 6218.177 kb on + strand at 6218.177 kb on + strand at 6218.177 kb on + strand at 6218.177 kb on + strand at 6218.177 kb on + strand at 6218.179 kb on + strand at 6218.179 kb on + strand at 6218.180 kb on - strand at 6218.180 kb on - strand at 6218.180 kb on - strand at 6218.197 kb on - strand at 6218.218 kb on + strand at 6218.219 kb on - strand at 6218.219 kb on - strand at 6218.251 kb on + strand at 6218.252 kb on - strand at 6218.301 kb on - strand at 6218.324 kb on + strand at 6218.384 kb on + strand at 6218.384 kb on + strand at 6218.385 kb on - strand at 6218.385 kb on - strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.386 kb on + strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.387 kb on - strand at 6218.390 kb on + strand at 6218.390 kb on + strand at 6218.437 kb on + strand at 6218.446 kb on + strand at 6218.446 kb on + strand at 6218.447 kb on - strand at 6218.498 kb on - strand, within AO353_28535 at 6218.498 kb on - strand, within AO353_28535 at 6218.506 kb on + strand, within AO353_28535 at 6218.507 kb on - strand, within AO353_28535 at 6218.829 kb on + strand, within AO353_28535 at 6218.829 kb on + strand, within AO353_28535 at 6218.829 kb on + strand, within AO353_28535 at 6218.829 kb on + strand, within AO353_28535 at 6218.829 kb on + strand, within AO353_28535 at 6218.924 kb on + strand, within AO353_28535 at 6218.925 kb on - strand, within AO353_28535 at 6219.061 kb on + strand, within AO353_28535 at 6219.061 kb on + strand, within AO353_28535 at 6219.061 kb on + strand, within AO353_28535 at 6219.061 kb on + strand, within AO353_28535 at 6219.062 kb on - strand, within AO353_28535 at 6219.062 kb on - strand, within AO353_28535 at 6219.062 kb on - strand, within AO353_28535 at 6219.062 kb on - strand, within AO353_28535 at 6219.062 kb on - strand, within AO353_28535
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 6,215,800 + AO353_28525 0.24 -0.9 6,215,800 + AO353_28525 0.24 -0.5 6,215,800 + AO353_28525 0.24 +0.6 6,215,800 + AO353_28525 0.24 -0.2 6,215,800 + AO353_28525 0.24 +0.8 6,215,800 + AO353_28525 0.24 -0.3 6,215,800 + AO353_28525 0.24 -1.1 6,215,801 - AO353_28525 0.24 +0.8 6,215,801 - AO353_28525 0.24 +0.7 6,215,801 - AO353_28525 0.24 -0.3 6,215,801 - AO353_28525 0.24 -0.2 6,215,801 - AO353_28525 0.24 +0.0 6,215,801 - AO353_28525 0.24 +1.0 6,215,801 - AO353_28525 0.24 -1.4 6,215,801 - AO353_28525 0.24 +0.0 6,215,875 + AO353_28525 0.31 +0.8 6,215,875 + AO353_28525 0.31 -0.3 6,215,875 + AO353_28525 0.31 +0.3 6,215,875 + AO353_28525 0.31 -0.1 6,215,875 + AO353_28525 0.31 -1.2 6,215,875 + AO353_28525 0.31 +0.2 6,215,876 - AO353_28525 0.31 -0.2 6,215,876 - AO353_28525 0.31 +1.8 6,215,876 - AO353_28525 0.31 +0.8 6,215,876 - AO353_28525 0.31 -1.4 6,216,125 + AO353_28525 0.56 -0.2 6,216,125 + AO353_28525 0.56 +1.0 6,216,126 - AO353_28525 0.56 -1.4 6,216,126 - AO353_28525 0.56 +0.8 6,216,126 - AO353_28525 0.56 -1.3 6,216,126 - AO353_28525 0.56 +1.9 6,216,147 + AO353_28525 0.58 -0.6 6,216,147 + AO353_28525 0.58 -1.2 6,216,147 + AO353_28525 0.58 +0.7 6,216,148 - AO353_28525 0.58 -0.8 6,216,148 - +1.4 6,216,308 + AO353_28525 0.74 -1.8 6,216,309 - AO353_28525 0.74 +0.7 6,216,355 + AO353_28525 0.78 -0.6 6,216,356 - AO353_28525 0.78 -1.6 6,216,382 + AO353_28525 0.81 +0.1 6,216,382 + AO353_28525 0.81 -0.6 6,216,382 + AO353_28525 0.81 +0.8 6,216,382 + AO353_28525 0.81 -0.7 6,216,383 - AO353_28525 0.81 -1.3 6,216,670 + -0.3 6,216,671 - -1.7 6,216,671 - -0.3 6,216,724 + +1.5 6,216,724 + +0.4 6,216,724 + +1.7 6,216,991 + AO353_28530 0.26 +0.0 6,216,991 + AO353_28530 0.26 +1.8 6,216,992 - AO353_28530 0.27 -0.7 6,216,992 - AO353_28530 0.27 +0.8 6,217,148 + AO353_28530 0.37 +1.0 6,217,163 + AO353_28530 0.38 +0.7 6,217,163 + AO353_28530 0.38 +0.8 6,217,163 + AO353_28530 0.38 -1.4 6,217,163 + AO353_28530 0.38 +0.1 6,217,163 + AO353_28530 0.38 +0.3 6,217,164 - AO353_28530 0.38 +0.4 6,217,164 - AO353_28530 0.38 +0.0 6,217,372 + AO353_28530 0.52 -1.4 6,217,439 - AO353_28530 0.57 +0.9 6,217,449 + AO353_28530 0.58 -0.3 6,217,819 + AO353_28530 0.83 -0.2 6,217,820 - AO353_28530 0.83 +1.1 6,217,820 - AO353_28530 0.83 +0.1 6,217,941 + -0.5 6,217,941 + +0.8 6,217,975 + +2.4 6,217,975 + -0.8 6,217,976 - -1.6 6,217,976 - -0.2 6,217,976 - +2.4 6,217,976 - +0.1 6,218,177 + +0.8 6,218,177 + +0.6 6,218,177 + +0.8 6,218,177 + -0.2 6,218,177 + -0.3 6,218,179 + +1.1 6,218,179 + -0.6 6,218,180 - -1.8 6,218,180 - -0.4 6,218,180 - +0.3 6,218,197 - -0.4 6,218,218 + +1.3 6,218,219 - +0.1 6,218,219 - +0.7 6,218,251 + -1.4 6,218,252 - -0.6 6,218,301 - +0.1 6,218,324 + +0.2 6,218,384 + +1.4 6,218,384 + +0.1 6,218,385 - -0.7 6,218,385 - -0.8 6,218,386 + -0.2 6,218,386 + +1.3 6,218,386 + +0.0 6,218,386 + -0.4 6,218,386 + -0.1 6,218,386 + -0.2 6,218,386 + +0.4 6,218,386 + +2.4 6,218,386 + +0.7 6,218,386 + +0.0 6,218,386 + +0.4 6,218,386 + -0.9 6,218,386 + -0.4 6,218,387 - +0.7 6,218,387 - +0.1 6,218,387 - +0.1 6,218,387 - -1.2 6,218,387 - +0.2 6,218,387 - -1.1 6,218,387 - -1.5 6,218,387 - +0.0 6,218,387 - +0.4 6,218,387 - +0.2 6,218,390 + +0.3 6,218,390 + +0.3 6,218,437 + +4.7 6,218,446 + -2.0 6,218,446 + -1.5 6,218,447 - +0.0 6,218,498 - AO353_28535 0.15 +0.7 6,218,498 - AO353_28535 0.15 -0.9 6,218,506 + AO353_28535 0.16 +0.5 6,218,507 - AO353_28535 0.16 +0.9 6,218,829 + AO353_28535 0.53 +0.8 6,218,829 + AO353_28535 0.53 +0.0 6,218,829 + AO353_28535 0.53 +1.3 6,218,829 + AO353_28535 0.53 -2.0 6,218,829 + AO353_28535 0.53 -2.6 6,218,924 + AO353_28535 0.64 -0.0 6,218,925 - AO353_28535 0.64 -1.3 6,219,061 + AO353_28535 0.79 -2.2 6,219,061 + AO353_28535 0.79 -0.9 6,219,061 + AO353_28535 0.79 -0.4 6,219,061 + AO353_28535 0.79 +1.7 6,219,062 - AO353_28535 0.80 -0.6 6,219,062 - AO353_28535 0.80 -0.3 6,219,062 - AO353_28535 0.80 -1.0 6,219,062 - AO353_28535 0.80 -1.3 6,219,062 - AO353_28535 0.80 +0.6
Or see this region's nucleotide sequence