Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28530

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28525 and AO353_28530 are separated by 23 nucleotidesAO353_28530 and AO353_28535 are separated by 294 nucleotides AO353_28525: AO353_28525 - oxidoreductase, at 6,215,557 to 6,216,576 _28525 AO353_28530: AO353_28530 - diguanylate cyclase, at 6,216,600 to 6,218,075 _28530 AO353_28535: AO353_28535 - AraC family transcriptional regulator, at 6,218,370 to 6,219,239 _28535 Position (kb) 6216 6217 6218 6219Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6216.125 kb on + strand, within AO353_28525at 6216.125 kb on + strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.148 kb on - strand, within AO353_28525at 6216.148 kb on - strandat 6216.308 kb on + strand, within AO353_28525at 6216.309 kb on - strand, within AO353_28525at 6216.355 kb on + strand, within AO353_28525at 6216.356 kb on - strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.383 kb on - strand, within AO353_28525at 6216.670 kb on + strandat 6216.671 kb on - strandat 6216.671 kb on - strandat 6216.724 kb on + strandat 6216.724 kb on + strandat 6216.724 kb on + strandat 6216.991 kb on + strand, within AO353_28530at 6216.991 kb on + strand, within AO353_28530at 6216.992 kb on - strand, within AO353_28530at 6216.992 kb on - strand, within AO353_28530at 6217.148 kb on + strand, within AO353_28530at 6217.163 kb on + strand, within AO353_28530at 6217.163 kb on + strand, within AO353_28530at 6217.163 kb on + strand, within AO353_28530at 6217.163 kb on + strand, within AO353_28530at 6217.163 kb on + strand, within AO353_28530at 6217.164 kb on - strand, within AO353_28530at 6217.164 kb on - strand, within AO353_28530at 6217.372 kb on + strand, within AO353_28530at 6217.439 kb on - strand, within AO353_28530at 6217.449 kb on + strand, within AO353_28530at 6217.819 kb on + strand, within AO353_28530at 6217.820 kb on - strand, within AO353_28530at 6217.820 kb on - strand, within AO353_28530at 6217.941 kb on + strandat 6217.941 kb on + strandat 6217.975 kb on + strandat 6217.975 kb on + strandat 6217.976 kb on - strandat 6217.976 kb on - strandat 6217.976 kb on - strandat 6217.976 kb on - strandat 6218.177 kb on + strandat 6218.177 kb on + strandat 6218.177 kb on + strandat 6218.177 kb on + strandat 6218.177 kb on + strandat 6218.179 kb on + strandat 6218.179 kb on + strandat 6218.180 kb on - strandat 6218.180 kb on - strandat 6218.180 kb on - strandat 6218.197 kb on - strandat 6218.218 kb on + strandat 6218.219 kb on - strandat 6218.219 kb on - strandat 6218.251 kb on + strandat 6218.252 kb on - strandat 6218.301 kb on - strandat 6218.324 kb on + strandat 6218.384 kb on + strandat 6218.384 kb on + strandat 6218.385 kb on - strandat 6218.385 kb on - strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.386 kb on + strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.387 kb on - strandat 6218.390 kb on + strandat 6218.390 kb on + strandat 6218.437 kb on + strandat 6218.446 kb on + strandat 6218.446 kb on + strandat 6218.447 kb on - strandat 6218.498 kb on - strand, within AO353_28535at 6218.498 kb on - strand, within AO353_28535at 6218.506 kb on + strand, within AO353_28535at 6218.507 kb on - strand, within AO353_28535at 6218.829 kb on + strand, within AO353_28535at 6218.829 kb on + strand, within AO353_28535at 6218.829 kb on + strand, within AO353_28535at 6218.829 kb on + strand, within AO353_28535at 6218.829 kb on + strand, within AO353_28535at 6218.924 kb on + strand, within AO353_28535at 6218.925 kb on - strand, within AO353_28535at 6219.061 kb on + strand, within AO353_28535at 6219.061 kb on + strand, within AO353_28535at 6219.061 kb on + strand, within AO353_28535at 6219.061 kb on + strand, within AO353_28535at 6219.062 kb on - strand, within AO353_28535at 6219.062 kb on - strand, within AO353_28535at 6219.062 kb on - strand, within AO353_28535at 6219.062 kb on - strand, within AO353_28535at 6219.062 kb on - strand, within AO353_28535

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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6,215,800 + AO353_28525 0.24 -0.9
6,215,800 + AO353_28525 0.24 -0.5
6,215,800 + AO353_28525 0.24 +0.6
6,215,800 + AO353_28525 0.24 -0.2
6,215,800 + AO353_28525 0.24 +0.8
6,215,800 + AO353_28525 0.24 -0.3
6,215,800 + AO353_28525 0.24 -1.1
6,215,801 - AO353_28525 0.24 +0.8
6,215,801 - AO353_28525 0.24 +0.7
6,215,801 - AO353_28525 0.24 -0.3
6,215,801 - AO353_28525 0.24 -0.2
6,215,801 - AO353_28525 0.24 +0.0
6,215,801 - AO353_28525 0.24 +1.0
6,215,801 - AO353_28525 0.24 -1.4
6,215,801 - AO353_28525 0.24 +0.0
6,215,875 + AO353_28525 0.31 +0.8
6,215,875 + AO353_28525 0.31 -0.3
6,215,875 + AO353_28525 0.31 +0.3
6,215,875 + AO353_28525 0.31 -0.1
6,215,875 + AO353_28525 0.31 -1.2
6,215,875 + AO353_28525 0.31 +0.2
6,215,876 - AO353_28525 0.31 -0.2
6,215,876 - AO353_28525 0.31 +1.8
6,215,876 - AO353_28525 0.31 +0.8
6,215,876 - AO353_28525 0.31 -1.4
6,216,125 + AO353_28525 0.56 -0.2
6,216,125 + AO353_28525 0.56 +1.0
6,216,126 - AO353_28525 0.56 -1.4
6,216,126 - AO353_28525 0.56 +0.8
6,216,126 - AO353_28525 0.56 -1.3
6,216,126 - AO353_28525 0.56 +1.9
6,216,147 + AO353_28525 0.58 -0.6
6,216,147 + AO353_28525 0.58 -1.2
6,216,147 + AO353_28525 0.58 +0.7
6,216,148 - AO353_28525 0.58 -0.8
6,216,148 - +1.4
6,216,308 + AO353_28525 0.74 -1.8
6,216,309 - AO353_28525 0.74 +0.7
6,216,355 + AO353_28525 0.78 -0.6
6,216,356 - AO353_28525 0.78 -1.6
6,216,382 + AO353_28525 0.81 +0.1
6,216,382 + AO353_28525 0.81 -0.6
6,216,382 + AO353_28525 0.81 +0.8
6,216,382 + AO353_28525 0.81 -0.7
6,216,383 - AO353_28525 0.81 -1.3
6,216,670 + -0.3
6,216,671 - -1.7
6,216,671 - -0.3
6,216,724 + +1.5
6,216,724 + +0.4
6,216,724 + +1.7
6,216,991 + AO353_28530 0.26 +0.0
6,216,991 + AO353_28530 0.26 +1.8
6,216,992 - AO353_28530 0.27 -0.7
6,216,992 - AO353_28530 0.27 +0.8
6,217,148 + AO353_28530 0.37 +1.0
6,217,163 + AO353_28530 0.38 +0.7
6,217,163 + AO353_28530 0.38 +0.8
6,217,163 + AO353_28530 0.38 -1.4
6,217,163 + AO353_28530 0.38 +0.1
6,217,163 + AO353_28530 0.38 +0.3
6,217,164 - AO353_28530 0.38 +0.4
6,217,164 - AO353_28530 0.38 +0.0
6,217,372 + AO353_28530 0.52 -1.4
6,217,439 - AO353_28530 0.57 +0.9
6,217,449 + AO353_28530 0.58 -0.3
6,217,819 + AO353_28530 0.83 -0.2
6,217,820 - AO353_28530 0.83 +1.1
6,217,820 - AO353_28530 0.83 +0.1
6,217,941 + -0.5
6,217,941 + +0.8
6,217,975 + +2.4
6,217,975 + -0.8
6,217,976 - -1.6
6,217,976 - -0.2
6,217,976 - +2.4
6,217,976 - +0.1
6,218,177 + +0.8
6,218,177 + +0.6
6,218,177 + +0.8
6,218,177 + -0.2
6,218,177 + -0.3
6,218,179 + +1.1
6,218,179 + -0.6
6,218,180 - -1.8
6,218,180 - -0.4
6,218,180 - +0.3
6,218,197 - -0.4
6,218,218 + +1.3
6,218,219 - +0.1
6,218,219 - +0.7
6,218,251 + -1.4
6,218,252 - -0.6
6,218,301 - +0.1
6,218,324 + +0.2
6,218,384 + +1.4
6,218,384 + +0.1
6,218,385 - -0.7
6,218,385 - -0.8
6,218,386 + -0.2
6,218,386 + +1.3
6,218,386 + +0.0
6,218,386 + -0.4
6,218,386 + -0.1
6,218,386 + -0.2
6,218,386 + +0.4
6,218,386 + +2.4
6,218,386 + +0.7
6,218,386 + +0.0
6,218,386 + +0.4
6,218,386 + -0.9
6,218,386 + -0.4
6,218,387 - +0.7
6,218,387 - +0.1
6,218,387 - +0.1
6,218,387 - -1.2
6,218,387 - +0.2
6,218,387 - -1.1
6,218,387 - -1.5
6,218,387 - +0.0
6,218,387 - +0.4
6,218,387 - +0.2
6,218,390 + +0.3
6,218,390 + +0.3
6,218,437 + +4.7
6,218,446 + -2.0
6,218,446 + -1.5
6,218,447 - +0.0
6,218,498 - AO353_28535 0.15 +0.7
6,218,498 - AO353_28535 0.15 -0.9
6,218,506 + AO353_28535 0.16 +0.5
6,218,507 - AO353_28535 0.16 +0.9
6,218,829 + AO353_28535 0.53 +0.8
6,218,829 + AO353_28535 0.53 +0.0
6,218,829 + AO353_28535 0.53 +1.3
6,218,829 + AO353_28535 0.53 -2.0
6,218,829 + AO353_28535 0.53 -2.6
6,218,924 + AO353_28535 0.64 -0.0
6,218,925 - AO353_28535 0.64 -1.3
6,219,061 + AO353_28535 0.79 -2.2
6,219,061 + AO353_28535 0.79 -0.9
6,219,061 + AO353_28535 0.79 -0.4
6,219,061 + AO353_28535 0.79 +1.7
6,219,062 - AO353_28535 0.80 -0.6
6,219,062 - AO353_28535 0.80 -0.3
6,219,062 - AO353_28535 0.80 -1.0
6,219,062 - AO353_28535 0.80 -1.3
6,219,062 - AO353_28535 0.80 +0.6

Or see this region's nucleotide sequence