Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28380

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28375 and AO353_28380 are separated by 137 nucleotidesAO353_28380 and AO353_28385 are separated by 181 nucleotides AO353_28375: AO353_28375 - MFS transporter, at 6,185,035 to 6,186,318 _28375 AO353_28380: AO353_28380 - GntR family transcriptional regulator, at 6,186,456 to 6,187,187 _28380 AO353_28385: AO353_28385 - twitching motility protein PilT, at 6,187,369 to 6,188,109 _28385 Position (kb) 6186 6187 6188Strain fitness (log2 ratio) -2 -1 0 1 2at 6185.756 kb on - strand, within AO353_28375at 6185.834 kb on + strand, within AO353_28375at 6185.834 kb on + strand, within AO353_28375at 6185.835 kb on - strand, within AO353_28375at 6185.872 kb on + strand, within AO353_28375at 6185.890 kb on + strand, within AO353_28375at 6185.891 kb on - strand, within AO353_28375at 6185.891 kb on - strand, within AO353_28375at 6185.891 kb on - strand, within AO353_28375at 6185.891 kb on - strand, within AO353_28375at 6185.891 kb on - strand, within AO353_28375at 6185.915 kb on + strand, within AO353_28375at 6185.915 kb on + strand, within AO353_28375at 6186.078 kb on + strand, within AO353_28375at 6186.078 kb on + strand, within AO353_28375at 6186.078 kb on + strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.079 kb on - strand, within AO353_28375at 6186.093 kb on - strand, within AO353_28375at 6186.142 kb on + strand, within AO353_28375at 6186.229 kb on + strandat 6186.230 kb on - strandat 6186.230 kb on - strandat 6186.326 kb on + strandat 6186.332 kb on + strandat 6186.332 kb on + strandat 6186.333 kb on - strandat 6186.333 kb on - strandat 6186.333 kb on - strandat 6186.333 kb on - strandat 6186.333 kb on - strandat 6186.333 kb on - strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.334 kb on + strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.335 kb on - strandat 6186.464 kb on + strandat 6186.465 kb on - strandat 6186.580 kb on - strand, within AO353_28380at 6186.609 kb on + strand, within AO353_28380at 6186.762 kb on + strand, within AO353_28380at 6186.763 kb on - strand, within AO353_28380at 6186.869 kb on + strand, within AO353_28380at 6186.971 kb on + strand, within AO353_28380at 6186.971 kb on + strandat 6186.972 kb on - strand, within AO353_28380at 6187.054 kb on + strand, within AO353_28380at 6187.150 kb on + strandat 6187.150 kb on + strandat 6187.151 kb on - strandat 6187.151 kb on - strandat 6187.195 kb on - strandat 6187.195 kb on - strandat 6187.216 kb on + strandat 6187.216 kb on + strandat 6187.217 kb on - strandat 6187.218 kb on + strandat 6187.219 kb on - strandat 6187.237 kb on + strandat 6187.238 kb on - strandat 6187.265 kb on - strandat 6187.317 kb on + strandat 6187.317 kb on + strandat 6187.317 kb on + strandat 6187.317 kb on + strandat 6187.318 kb on - strandat 6187.358 kb on + strandat 6187.358 kb on + strandat 6187.359 kb on - strandat 6187.359 kb on - strandat 6187.393 kb on + strandat 6187.394 kb on - strandat 6187.394 kb on - strandat 6187.444 kb on - strandat 6187.444 kb on - strand, within AO353_28385at 6187.499 kb on + strand, within AO353_28385at 6187.588 kb on + strand, within AO353_28385at 6187.588 kb on + strand, within AO353_28385at 6187.589 kb on - strand, within AO353_28385at 6187.625 kb on + strand, within AO353_28385at 6187.726 kb on + strand, within AO353_28385at 6187.726 kb on + strand, within AO353_28385at 6187.840 kb on + strand, within AO353_28385at 6187.840 kb on + strand, within AO353_28385at 6187.841 kb on - strand, within AO353_28385at 6187.882 kb on + strand, within AO353_28385at 6187.882 kb on + strand, within AO353_28385at 6187.883 kb on - strand, within AO353_28385at 6187.905 kb on + strand, within AO353_28385at 6188.009 kb on - strand, within AO353_28385at 6188.047 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.178 kb on + strandat 6188.179 kb on - strandat 6188.179 kb on - strandat 6188.186 kb on + strandat 6188.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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6,185,756 - AO353_28375 0.56 -1.6
6,185,834 + AO353_28375 0.62 -0.5
6,185,834 + AO353_28375 0.62 -1.9
6,185,835 - AO353_28375 0.62 -0.4
6,185,872 + AO353_28375 0.65 +2.0
6,185,890 + AO353_28375 0.67 +0.1
6,185,891 - AO353_28375 0.67 -0.6
6,185,891 - AO353_28375 0.67 -0.6
6,185,891 - AO353_28375 0.67 -1.6
6,185,891 - AO353_28375 0.67 +0.3
6,185,891 - AO353_28375 0.67 +0.1
6,185,915 + AO353_28375 0.69 +0.0
6,185,915 + AO353_28375 0.69 +1.2
6,186,078 + AO353_28375 0.81 +0.6
6,186,078 + AO353_28375 0.81 -1.4
6,186,078 + AO353_28375 0.81 -1.6
6,186,079 - AO353_28375 0.81 -0.6
6,186,079 - AO353_28375 0.81 +0.6
6,186,079 - AO353_28375 0.81 +0.1
6,186,079 - AO353_28375 0.81 -0.2
6,186,079 - AO353_28375 0.81 +0.6
6,186,079 - AO353_28375 0.81 +0.8
6,186,093 - AO353_28375 0.82 +1.0
6,186,142 + AO353_28375 0.86 +0.8
6,186,229 + +0.6
6,186,230 - -0.1
6,186,230 - -0.3
6,186,326 + +0.0
6,186,332 + -0.2
6,186,332 + -0.3
6,186,333 - -0.2
6,186,333 - +1.0
6,186,333 - -0.6
6,186,333 - -0.3
6,186,333 - -1.2
6,186,333 - -1.2
6,186,334 + +1.0
6,186,334 + +0.6
6,186,334 + +0.2
6,186,334 + -0.8
6,186,334 + +1.1
6,186,334 + +1.0
6,186,334 + +0.3
6,186,334 + +0.6
6,186,334 + +0.8
6,186,334 + -1.8
6,186,334 + +0.0
6,186,334 + +1.2
6,186,335 - -0.7
6,186,335 - -0.5
6,186,335 - +0.4
6,186,335 - -0.6
6,186,335 - +1.3
6,186,335 - +0.3
6,186,335 - -0.2
6,186,335 - -0.8
6,186,335 - +0.2
6,186,335 - +0.7
6,186,464 + -1.1
6,186,465 - +0.7
6,186,580 - AO353_28380 0.17 -0.9
6,186,609 + AO353_28380 0.21 -0.9
6,186,762 + AO353_28380 0.42 +0.0
6,186,763 - AO353_28380 0.42 -0.1
6,186,869 + AO353_28380 0.56 -2.0
6,186,971 + AO353_28380 0.70 -1.7
6,186,971 + +0.4
6,186,972 - AO353_28380 0.70 -1.7
6,187,054 + AO353_28380 0.82 +0.6
6,187,150 + -0.6
6,187,150 + +0.4
6,187,151 - +0.4
6,187,151 - -1.8
6,187,195 - +0.3
6,187,195 - -0.4
6,187,216 + -0.1
6,187,216 + -0.4
6,187,217 - +0.5
6,187,218 + +0.2
6,187,219 - +0.8
6,187,237 + -0.1
6,187,238 - -1.9
6,187,265 - +0.1
6,187,317 + +0.2
6,187,317 + -0.4
6,187,317 + -0.6
6,187,317 + +0.7
6,187,318 - +0.9
6,187,358 + +1.0
6,187,358 + -0.4
6,187,359 - -0.3
6,187,359 - +0.2
6,187,393 + -1.0
6,187,394 - -0.7
6,187,394 - +0.2
6,187,444 - +1.6
6,187,444 - AO353_28385 0.10 +0.8
6,187,499 + AO353_28385 0.18 +0.5
6,187,588 + AO353_28385 0.30 -1.3
6,187,588 + AO353_28385 0.30 -0.6
6,187,589 - AO353_28385 0.30 -0.8
6,187,625 + AO353_28385 0.35 -0.3
6,187,726 + AO353_28385 0.48 +0.2
6,187,726 + AO353_28385 0.48 +1.0
6,187,840 + AO353_28385 0.64 -0.3
6,187,840 + AO353_28385 0.64 -0.7
6,187,841 - AO353_28385 0.64 +1.0
6,187,882 + AO353_28385 0.69 -0.2
6,187,882 + AO353_28385 0.69 -1.2
6,187,883 - AO353_28385 0.69 +0.7
6,187,905 + AO353_28385 0.72 -2.2
6,188,009 - AO353_28385 0.86 +0.3
6,188,047 + -1.1
6,188,178 + -0.3
6,188,178 + -1.0
6,188,178 + -2.2
6,188,178 + -0.6
6,188,178 + -0.8
6,188,179 - +0.8
6,188,179 - -0.1
6,188,186 + +0.2
6,188,187 - +1.0

Or see this region's nucleotide sequence