Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28200

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28190 and AO353_28195 are separated by 339 nucleotidesAO353_28195 and AO353_28200 are separated by 100 nucleotidesAO353_28200 and AO353_28205 are separated by 63 nucleotidesAO353_28205 and AO353_28210 are separated by 45 nucleotides AO353_28190: AO353_28190 - AraC family transcriptional regulator, at 6,145,786 to 6,146,769 _28190 AO353_28195: AO353_28195 - panthothenate synthetase, at 6,147,109 to 6,147,414 _28195 AO353_28200: AO353_28200 - ribosomal protein S3AE, at 6,147,515 to 6,147,916 _28200 AO353_28205: AO353_28205 - AsnC family transcriptional regulator, at 6,147,980 to 6,148,468 _28205 AO353_28210: AO353_28210 - 2-haloalkanoic acid dehalogenase, at 6,148,514 to 6,149,170 _28210 Position (kb) 6147 6148Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6146.626 kb on + strand, within AO353_28190at 6146.626 kb on + strand, within AO353_28190at 6146.626 kb on + strand, within AO353_28190at 6146.649 kb on + strand, within AO353_28190at 6146.650 kb on - strand, within AO353_28190at 6146.809 kb on + strandat 6146.810 kb on - strandat 6146.810 kb on - strandat 6146.868 kb on + strandat 6146.868 kb on + strandat 6146.868 kb on + strandat 6146.868 kb on + strandat 6146.868 kb on + strandat 6146.870 kb on + strandat 6146.870 kb on + strandat 6146.871 kb on + strandat 6146.871 kb on - strandat 6146.871 kb on - strandat 6146.871 kb on - strandat 6146.895 kb on + strandat 6146.896 kb on - strandat 6147.002 kb on + strandat 6147.003 kb on - strandat 6147.035 kb on + strandat 6147.036 kb on - strandat 6147.087 kb on + strandat 6147.087 kb on + strandat 6147.119 kb on + strandat 6147.120 kb on - strandat 6147.226 kb on + strand, within AO353_28195at 6147.226 kb on + strand, within AO353_28195at 6147.226 kb on + strand, within AO353_28195at 6147.227 kb on - strand, within AO353_28195at 6147.227 kb on - strand, within AO353_28195at 6147.227 kb on - strand, within AO353_28195at 6147.227 kb on - strand, within AO353_28195at 6147.232 kb on - strand, within AO353_28195at 6147.275 kb on + strand, within AO353_28195at 6147.275 kb on + strand, within AO353_28195at 6147.275 kb on + strand, within AO353_28195at 6147.275 kb on + strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.276 kb on - strand, within AO353_28195at 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.501 kb on + strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.502 kb on - strandat 6147.591 kb on + strand, within AO353_28200at 6147.592 kb on - strand, within AO353_28200at 6147.592 kb on - strand, within AO353_28200at 6147.707 kb on + strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strandat 6147.717 kb on + strand, within AO353_28200at 6147.718 kb on - strand, within AO353_28200at 6147.778 kb on + strand, within AO353_28200at 6147.876 kb on - strandat 6147.920 kb on - strandat 6147.920 kb on - strandat 6148.044 kb on + strand, within AO353_28205at 6148.044 kb on + strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.053 kb on + strand, within AO353_28205at 6148.105 kb on - strand, within AO353_28205at 6148.140 kb on + strand, within AO353_28205at 6148.141 kb on - strand, within AO353_28205at 6148.141 kb on - strand, within AO353_28205at 6148.302 kb on + strand, within AO353_28205at 6148.302 kb on + strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.457 kb on + strandat 6148.458 kb on - strandat 6148.473 kb on + strandat 6148.473 kb on + strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.493 kb on + strandat 6148.572 kb on + strandat 6148.572 kb on + strandat 6148.704 kb on - strand, within AO353_28210at 6148.827 kb on + strand, within AO353_28210at 6148.828 kb on - strand, within AO353_28210at 6148.842 kb on + strand, within AO353_28210at 6148.843 kb on - strand, within AO353_28210at 6148.843 kb on - strand, within AO353_28210

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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6,146,626 + AO353_28190 0.85 -1.5
6,146,626 + AO353_28190 0.85 +0.3
6,146,626 + AO353_28190 0.85 -0.5
6,146,649 + AO353_28190 0.88 +0.9
6,146,650 - AO353_28190 0.88 -0.1
6,146,809 + -1.1
6,146,810 - -0.2
6,146,810 - +1.5
6,146,868 + +0.8
6,146,868 + -2.0
6,146,868 + -0.7
6,146,868 + -0.8
6,146,868 + +1.0
6,146,870 + +0.4
6,146,870 + +0.3
6,146,871 + +0.5
6,146,871 - +1.7
6,146,871 - +0.1
6,146,871 - -0.3
6,146,895 + -0.2
6,146,896 - +0.4
6,147,002 + +0.2
6,147,003 - -0.2
6,147,035 + +0.0
6,147,036 - -0.8
6,147,087 + -0.6
6,147,087 + -1.7
6,147,119 + -0.7
6,147,120 - +0.4
6,147,226 + AO353_28195 0.38 +1.2
6,147,226 + AO353_28195 0.38 -0.1
6,147,226 + AO353_28195 0.38 -0.3
6,147,227 - AO353_28195 0.39 +0.5
6,147,227 - AO353_28195 0.39 -0.2
6,147,227 - AO353_28195 0.39 -0.5
6,147,227 - AO353_28195 0.39 -3.1
6,147,232 - AO353_28195 0.40 -1.1
6,147,275 + AO353_28195 0.54 +1.2
6,147,275 + AO353_28195 0.54 +0.5
6,147,275 + AO353_28195 0.54 -1.8
6,147,275 + AO353_28195 0.54 -1.5
6,147,276 - AO353_28195 0.55 -1.5
6,147,276 - AO353_28195 0.55 -2.1
6,147,276 - AO353_28195 0.55 +0.7
6,147,276 - AO353_28195 0.55 +0.1
6,147,276 - AO353_28195 0.55 +0.5
6,147,276 - AO353_28195 0.55 -0.1
6,147,276 - AO353_28195 0.55 +0.6
6,147,501 + +0.8
6,147,501 + +0.1
6,147,501 + +0.0
6,147,501 + +0.3
6,147,501 + +2.4
6,147,501 + -1.4
6,147,501 + -0.4
6,147,501 + -1.3
6,147,501 + -0.4
6,147,501 + -0.2
6,147,501 + -0.4
6,147,501 + +0.1
6,147,502 - -0.1
6,147,502 - +1.7
6,147,502 - +1.2
6,147,502 - +1.3
6,147,502 - -1.5
6,147,502 - +2.0
6,147,502 - +0.6
6,147,502 - +0.3
6,147,502 - -0.9
6,147,591 + AO353_28200 0.19 +0.4
6,147,592 - AO353_28200 0.19 +1.2
6,147,592 - AO353_28200 0.19 +0.7
6,147,707 + AO353_28200 0.48 +1.8
6,147,708 - AO353_28200 0.48 +1.2
6,147,708 - AO353_28200 0.48 +0.8
6,147,708 - AO353_28200 0.48 +0.1
6,147,708 - AO353_28200 0.48 -0.6
6,147,708 - +0.2
6,147,717 + AO353_28200 0.50 -0.5
6,147,718 - AO353_28200 0.50 -0.2
6,147,778 + AO353_28200 0.65 +0.7
6,147,876 - -0.4
6,147,920 - +0.0
6,147,920 - +0.2
6,148,044 + AO353_28205 0.13 -0.3
6,148,044 + AO353_28205 0.13 -2.1
6,148,045 - AO353_28205 0.13 +0.4
6,148,045 - AO353_28205 0.13 +0.4
6,148,045 - AO353_28205 0.13 -0.4
6,148,045 - AO353_28205 0.13 -2.2
6,148,053 + AO353_28205 0.15 +0.6
6,148,105 - AO353_28205 0.26 +1.3
6,148,140 + AO353_28205 0.33 +0.8
6,148,141 - AO353_28205 0.33 -0.3
6,148,141 - AO353_28205 0.33 +0.1
6,148,302 + AO353_28205 0.66 +0.2
6,148,302 + AO353_28205 0.66 +0.6
6,148,303 - AO353_28205 0.66 +0.3
6,148,303 - AO353_28205 0.66 -0.0
6,148,303 - AO353_28205 0.66 -1.1
6,148,303 - AO353_28205 0.66 -0.6
6,148,457 + -1.1
6,148,458 - -0.2
6,148,473 + -0.6
6,148,473 + +0.3
6,148,474 - -0.1
6,148,474 - -0.4
6,148,474 - -0.6
6,148,474 - +0.1
6,148,493 + -1.3
6,148,572 + +0.8
6,148,572 + -0.5
6,148,704 - AO353_28210 0.29 -1.0
6,148,827 + AO353_28210 0.48 -0.1
6,148,828 - AO353_28210 0.48 -1.6
6,148,842 + AO353_28210 0.50 -2.1
6,148,843 - AO353_28210 0.50 -0.6
6,148,843 - AO353_28210 0.50 -1.2

Or see this region's nucleotide sequence