Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27315

Experiment: Cobalt chloride 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27305 and AO353_27310 overlap by 4 nucleotidesAO353_27310 and AO353_27315 are separated by 5 nucleotidesAO353_27315 and AO353_27320 are separated by 57 nucleotidesAO353_27320 and AO353_27325 overlap by 4 nucleotides AO353_27305: AO353_27305 - baseplate assembly protein, at 5,971,106 to 5,971,987 _27305 AO353_27310: AO353_27310 - phage baseplate protein, at 5,971,984 to 5,972,310 _27310 AO353_27315: AO353_27315 - hypothetical protein, at 5,972,316 to 5,972,543 _27315 AO353_27320: AO353_27320 - phage baseplate protein, at 5,972,601 to 5,973,164 _27320 AO353_27325: AO353_27325 - hypothetical protein, at 5,973,161 to 5,973,673 _27325 Position (kb) 5972 5973Strain fitness (log2 ratio) -2 -1 0 1 2at 5971.412 kb on + strand, within AO353_27305at 5971.413 kb on - strand, within AO353_27305at 5971.502 kb on - strand, within AO353_27305at 5971.502 kb on - strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.506 kb on + strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.507 kb on - strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.575 kb on + strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.576 kb on - strand, within AO353_27305at 5971.611 kb on + strand, within AO353_27305at 5971.612 kb on - strand, within AO353_27305at 5971.612 kb on - strand, within AO353_27305at 5971.751 kb on + strand, within AO353_27305at 5971.752 kb on - strand, within AO353_27305at 5971.752 kb on - strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.818 kb on + strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strandat 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.819 kb on - strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.887 kb on + strand, within AO353_27305at 5971.888 kb on - strand, within AO353_27305at 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.917 kb on + strandat 5971.918 kb on - strandat 5971.918 kb on - strandat 5971.981 kb on + strandat 5971.981 kb on + strandat 5971.987 kb on + strandat 5971.987 kb on + strandat 5971.987 kb on + strandat 5971.988 kb on - strandat 5971.988 kb on - strandat 5971.994 kb on - strandat 5972.134 kb on + strand, within AO353_27310at 5972.312 kb on + strandat 5972.312 kb on + strandat 5972.312 kb on + strandat 5972.312 kb on + strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.313 kb on - strandat 5972.391 kb on + strand, within AO353_27315at 5972.392 kb on - strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.453 kb on + strand, within AO353_27315at 5972.454 kb on - strand, within AO353_27315at 5972.454 kb on - strand, within AO353_27315at 5972.454 kb on - strand, within AO353_27315at 5972.454 kb on - strand, within AO353_27315at 5972.454 kb on - strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.455 kb on + strand, within AO353_27315at 5972.456 kb on - strand, within AO353_27315at 5972.456 kb on - strand, within AO353_27315at 5972.456 kb on - strand, within AO353_27315at 5972.456 kb on - strand, within AO353_27315at 5972.456 kb on - strand, within AO353_27315at 5972.602 kb on + strandat 5972.602 kb on + strandat 5972.602 kb on + strandat 5972.602 kb on + strandat 5972.603 kb on - strandat 5972.677 kb on - strand, within AO353_27320at 5972.714 kb on + strand, within AO353_27320at 5972.715 kb on - strand, within AO353_27320at 5972.728 kb on - strand, within AO353_27320at 5972.749 kb on - strand, within AO353_27320at 5972.809 kb on + strandat 5972.809 kb on + strand, within AO353_27320at 5972.810 kb on - strand, within AO353_27320at 5972.830 kb on + strand, within AO353_27320at 5972.830 kb on + strand, within AO353_27320at 5972.830 kb on + strand, within AO353_27320at 5972.903 kb on + strand, within AO353_27320at 5972.921 kb on + strand, within AO353_27320at 5972.937 kb on + strand, within AO353_27320at 5972.937 kb on + strand, within AO353_27320at 5973.093 kb on + strand, within AO353_27320at 5973.093 kb on + strand, within AO353_27320at 5973.106 kb on + strand, within AO353_27320at 5973.106 kb on + strand, within AO353_27320at 5973.106 kb on + strand, within AO353_27320at 5973.106 kb on + strand, within AO353_27320at 5973.106 kb on + strand, within AO353_27320at 5973.107 kb on - strand, within AO353_27320at 5973.107 kb on - strand, within AO353_27320at 5973.107 kb on - strand, within AO353_27320at 5973.153 kb on + strandat 5973.153 kb on + strandat 5973.153 kb on + strandat 5973.154 kb on - strandat 5973.154 kb on - strandat 5973.154 kb on - strandat 5973.154 kb on - strandat 5973.154 kb on - strandat 5973.157 kb on + strandat 5973.157 kb on + strandat 5973.157 kb on + strandat 5973.157 kb on + strandat 5973.157 kb on + strandat 5973.158 kb on - strandat 5973.158 kb on - strandat 5973.158 kb on - strandat 5973.158 kb on - strandat 5973.158 kb on - strandat 5973.158 kb on - strandat 5973.181 kb on + strandat 5973.181 kb on + strandat 5973.212 kb on + strandat 5973.213 kb on - strand, within AO353_27325at 5973.213 kb on - strand, within AO353_27325at 5973.264 kb on + strand, within AO353_27325at 5973.264 kb on + strand, within AO353_27325at 5973.265 kb on - strand, within AO353_27325at 5973.301 kb on - strand, within AO353_27325at 5973.308 kb on + strand, within AO353_27325at 5973.308 kb on + strand, within AO353_27325at 5973.308 kb on + strand, within AO353_27325at 5973.309 kb on - strand, within AO353_27325at 5973.309 kb on - strand, within AO353_27325at 5973.309 kb on - strand, within AO353_27325at 5973.309 kb on - strand, within AO353_27325at 5973.341 kb on + strand, within AO353_27325at 5973.341 kb on + strand, within AO353_27325at 5973.341 kb on + strand, within AO353_27325at 5973.341 kb on + strand, within AO353_27325at 5973.342 kb on - strand, within AO353_27325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
remove
5,971,412 + AO353_27305 0.35 +0.8
5,971,413 - AO353_27305 0.35 +0.0
5,971,502 - AO353_27305 0.45 +0.6
5,971,502 - AO353_27305 0.45 +0.7
5,971,506 + AO353_27305 0.45 +0.0
5,971,506 + AO353_27305 0.45 +0.3
5,971,506 + AO353_27305 0.45 -2.1
5,971,506 + AO353_27305 0.45 +0.8
5,971,506 + AO353_27305 0.45 -0.1
5,971,507 - AO353_27305 0.45 -0.2
5,971,507 - AO353_27305 0.45 +1.0
5,971,507 - AO353_27305 0.45 -0.2
5,971,575 + AO353_27305 0.53 -0.2
5,971,575 + AO353_27305 0.53 +1.0
5,971,575 + AO353_27305 0.53 +0.6
5,971,575 + AO353_27305 0.53 -1.7
5,971,575 + AO353_27305 0.53 -0.8
5,971,575 + AO353_27305 0.53 -1.6
5,971,575 + AO353_27305 0.53 -0.1
5,971,575 + AO353_27305 0.53 -0.2
5,971,575 + AO353_27305 0.53 +0.8
5,971,576 - AO353_27305 0.53 +1.3
5,971,576 - AO353_27305 0.53 +0.4
5,971,576 - AO353_27305 0.53 -0.3
5,971,576 - AO353_27305 0.53 +0.4
5,971,576 - AO353_27305 0.53 -1.1
5,971,611 + AO353_27305 0.57 -1.3
5,971,612 - AO353_27305 0.57 +0.0
5,971,612 - AO353_27305 0.57 -0.1
5,971,751 + AO353_27305 0.73 +0.5
5,971,752 - AO353_27305 0.73 +0.2
5,971,752 - AO353_27305 0.73 +1.3
5,971,818 + AO353_27305 0.81 -0.2
5,971,818 + AO353_27305 0.81 +0.0
5,971,818 + AO353_27305 0.81 +0.1
5,971,818 + AO353_27305 0.81 +0.6
5,971,818 + AO353_27305 0.81 +2.5
5,971,818 + AO353_27305 0.81 +1.4
5,971,819 - AO353_27305 0.81 -0.7
5,971,819 - AO353_27305 0.81 -0.2
5,971,819 - +0.0
5,971,819 - AO353_27305 0.81 -0.6
5,971,819 - AO353_27305 0.81 +0.8
5,971,819 - AO353_27305 0.81 -0.7
5,971,819 - AO353_27305 0.81 -0.8
5,971,887 + AO353_27305 0.89 -0.9
5,971,887 + AO353_27305 0.89 -0.6
5,971,887 + AO353_27305 0.89 +1.1
5,971,888 - AO353_27305 0.89 -0.7
5,971,917 + -1.2
5,971,917 + -1.6
5,971,917 + -0.6
5,971,917 + -2.2
5,971,917 + +0.8
5,971,918 - +0.7
5,971,918 - -0.2
5,971,981 + +0.7
5,971,981 + -1.7
5,971,987 + +0.4
5,971,987 + -1.0
5,971,987 + +0.8
5,971,988 - -0.7
5,971,988 - +0.5
5,971,994 - +0.6
5,972,134 + AO353_27310 0.46 -0.1
5,972,312 + -0.0
5,972,312 + +0.5
5,972,312 + +0.0
5,972,312 + +0.9
5,972,313 - -0.5
5,972,313 - +0.4
5,972,313 - -1.4
5,972,313 - +0.4
5,972,313 - -0.2
5,972,313 - +0.1
5,972,313 - +2.0
5,972,391 + AO353_27315 0.33 -0.1
5,972,392 - AO353_27315 0.33 +0.7
5,972,453 + AO353_27315 0.60 +1.0
5,972,453 + AO353_27315 0.60 +0.1
5,972,453 + AO353_27315 0.60 +0.1
5,972,453 + AO353_27315 0.60 -2.0
5,972,453 + AO353_27315 0.60 -0.1
5,972,453 + AO353_27315 0.60 -1.0
5,972,454 - AO353_27315 0.61 +1.2
5,972,454 - AO353_27315 0.61 +0.6
5,972,454 - AO353_27315 0.61 -1.0
5,972,454 - AO353_27315 0.61 -0.1
5,972,454 - AO353_27315 0.61 +1.1
5,972,455 + AO353_27315 0.61 +0.6
5,972,455 + AO353_27315 0.61 +0.9
5,972,455 + AO353_27315 0.61 +0.0
5,972,455 + AO353_27315 0.61 +0.4
5,972,455 + AO353_27315 0.61 -1.4
5,972,455 + AO353_27315 0.61 +0.3
5,972,456 - AO353_27315 0.61 +1.4
5,972,456 - AO353_27315 0.61 +0.7
5,972,456 - AO353_27315 0.61 +1.5
5,972,456 - AO353_27315 0.61 -1.2
5,972,456 - AO353_27315 0.61 +1.1
5,972,602 + -0.6
5,972,602 + -0.9
5,972,602 + -0.6
5,972,602 + -0.4
5,972,603 - +0.4
5,972,677 - AO353_27320 0.13 +1.4
5,972,714 + AO353_27320 0.20 +0.0
5,972,715 - AO353_27320 0.20 -0.6
5,972,728 - AO353_27320 0.23 +0.8
5,972,749 - AO353_27320 0.26 +0.4
5,972,809 + -0.3
5,972,809 + AO353_27320 0.37 +0.3
5,972,810 - AO353_27320 0.37 +0.8
5,972,830 + AO353_27320 0.41 -1.4
5,972,830 + AO353_27320 0.41 -0.8
5,972,830 + AO353_27320 0.41 -0.4
5,972,903 + AO353_27320 0.54 -0.6
5,972,921 + AO353_27320 0.57 -0.4
5,972,937 + AO353_27320 0.60 -0.9
5,972,937 + AO353_27320 0.60 +0.2
5,973,093 + AO353_27320 0.87 +1.4
5,973,093 + AO353_27320 0.87 +0.7
5,973,106 + AO353_27320 0.90 -1.5
5,973,106 + AO353_27320 0.90 -1.1
5,973,106 + AO353_27320 0.90 -0.3
5,973,106 + AO353_27320 0.90 -0.2
5,973,106 + AO353_27320 0.90 -0.5
5,973,107 - AO353_27320 0.90 -0.7
5,973,107 - AO353_27320 0.90 +0.3
5,973,107 - AO353_27320 0.90 +1.3
5,973,153 + +2.6
5,973,153 + +1.4
5,973,153 + +0.0
5,973,154 - +0.1
5,973,154 - +1.7
5,973,154 - +1.4
5,973,154 - +1.1
5,973,154 - +0.4
5,973,157 + +0.7
5,973,157 + +0.4
5,973,157 + +1.3
5,973,157 + +0.1
5,973,157 + +0.4
5,973,158 - -0.8
5,973,158 - +0.0
5,973,158 - -1.2
5,973,158 - -0.2
5,973,158 - -0.8
5,973,158 - +1.0
5,973,181 + +0.2
5,973,181 + +2.7
5,973,212 + -1.6
5,973,213 - AO353_27325 0.10 +0.0
5,973,213 - AO353_27325 0.10 -1.4
5,973,264 + AO353_27325 0.20 -0.7
5,973,264 + AO353_27325 0.20 -0.8
5,973,265 - AO353_27325 0.20 -1.4
5,973,301 - AO353_27325 0.27 +1.7
5,973,308 + AO353_27325 0.29 -0.1
5,973,308 + AO353_27325 0.29 -0.1
5,973,308 + AO353_27325 0.29 -0.9
5,973,309 - AO353_27325 0.29 +0.3
5,973,309 - AO353_27325 0.29 -0.4
5,973,309 - AO353_27325 0.29 +1.4
5,973,309 - AO353_27325 0.29 +2.0
5,973,341 + AO353_27325 0.35 +0.8
5,973,341 + AO353_27325 0.35 -0.2
5,973,341 + AO353_27325 0.35 -1.7
5,973,341 + AO353_27325 0.35 -1.0
5,973,342 - AO353_27325 0.35 +1.7

Or see this region's nucleotide sequence