Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23580

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23570 and AO353_23575 are separated by 89 nucleotidesAO353_23575 and AO353_23580 are separated by 184 nucleotidesAO353_23580 and AO353_23585 are separated by 98 nucleotides AO353_23570: AO353_23570 - LysR family transcriptional regulator, at 5,162,068 to 5,162,961 _23570 AO353_23575: AO353_23575 - hypothetical protein, at 5,163,051 to 5,163,287 _23575 AO353_23580: AO353_23580 - ACP phosphodiesterase, at 5,163,472 to 5,164,029 _23580 AO353_23585: AO353_23585 - hypothetical protein, at 5,164,128 to 5,165,231 _23585 Position (kb) 5163 5164 5165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5162.700 kb on - strand, within AO353_23570at 5162.700 kb on - strand, within AO353_23570at 5162.707 kb on + strand, within AO353_23570at 5162.707 kb on + strand, within AO353_23570at 5162.748 kb on - strand, within AO353_23570at 5162.748 kb on - strand, within AO353_23570at 5162.953 kb on + strandat 5162.954 kb on - strandat 5162.954 kb on - strandat 5163.027 kb on - strandat 5163.027 kb on - strandat 5163.027 kb on - strandat 5163.041 kb on + strandat 5163.053 kb on - strandat 5163.109 kb on - strand, within AO353_23575at 5163.109 kb on - strand, within AO353_23575at 5163.158 kb on + strand, within AO353_23575at 5163.158 kb on + strand, within AO353_23575at 5163.158 kb on + strand, within AO353_23575at 5163.159 kb on - strand, within AO353_23575at 5163.159 kb on - strand, within AO353_23575at 5163.159 kb on - strand, within AO353_23575at 5163.160 kb on + strand, within AO353_23575at 5163.160 kb on + strand, within AO353_23575at 5163.161 kb on - strand, within AO353_23575at 5163.161 kb on - strand, within AO353_23575at 5163.161 kb on - strand, within AO353_23575at 5163.161 kb on - strand, within AO353_23575at 5163.161 kb on - strand, within AO353_23575at 5163.233 kb on - strand, within AO353_23575at 5163.276 kb on + strandat 5163.276 kb on + strandat 5163.277 kb on - strandat 5163.294 kb on - strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.308 kb on + strandat 5163.309 kb on - strandat 5163.344 kb on - strandat 5163.352 kb on + strandat 5163.353 kb on - strandat 5163.353 kb on - strandat 5163.362 kb on + strandat 5163.378 kb on + strandat 5163.378 kb on + strandat 5163.378 kb on + strandat 5163.379 kb on - strandat 5163.379 kb on - strandat 5163.390 kb on - strandat 5163.390 kb on - strandat 5163.411 kb on + strandat 5163.411 kb on + strandat 5163.412 kb on - strandat 5163.412 kb on - strandat 5163.412 kb on - strandat 5163.412 kb on - strandat 5163.430 kb on + strandat 5163.430 kb on + strandat 5163.430 kb on + strandat 5163.430 kb on + strandat 5163.430 kb on + strandat 5163.430 kb on + strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.431 kb on - strandat 5163.432 kb on + strandat 5163.432 kb on + strandat 5163.432 kb on + strandat 5163.432 kb on + strandat 5163.432 kb on + strandat 5163.433 kb on - strandat 5163.433 kb on - strandat 5163.433 kb on - strandat 5163.433 kb on - strandat 5163.436 kb on + strandat 5163.436 kb on + strandat 5163.436 kb on + strandat 5163.436 kb on + strandat 5163.437 kb on - strandat 5163.457 kb on - strandat 5163.486 kb on + strandat 5163.487 kb on - strandat 5163.614 kb on - strand, within AO353_23580at 5163.614 kb on - strand, within AO353_23580at 5163.614 kb on - strand, within AO353_23580at 5163.632 kb on + strand, within AO353_23580at 5163.633 kb on - strand, within AO353_23580at 5163.633 kb on - strand, within AO353_23580at 5163.633 kb on - strand, within AO353_23580at 5163.649 kb on + strand, within AO353_23580at 5163.649 kb on + strand, within AO353_23580at 5163.650 kb on - strand, within AO353_23580at 5163.650 kb on - strand, within AO353_23580at 5163.650 kb on - strand, within AO353_23580at 5163.710 kb on - strand, within AO353_23580at 5163.710 kb on - strand, within AO353_23580at 5163.710 kb on - strand, within AO353_23580at 5163.711 kb on + strand, within AO353_23580at 5163.712 kb on - strand, within AO353_23580at 5163.843 kb on + strand, within AO353_23580at 5163.907 kb on + strand, within AO353_23580at 5163.907 kb on + strand, within AO353_23580at 5163.908 kb on - strand, within AO353_23580at 5163.908 kb on - strand, within AO353_23580at 5163.995 kb on - strandat 5164.018 kb on - strandat 5164.272 kb on - strand, within AO353_23585at 5164.277 kb on + strand, within AO353_23585at 5164.277 kb on + strand, within AO353_23585at 5164.277 kb on + strand, within AO353_23585at 5164.277 kb on + strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.278 kb on - strand, within AO353_23585at 5164.281 kb on + strand, within AO353_23585at 5164.281 kb on + strand, within AO353_23585at 5164.281 kb on + strand, within AO353_23585at 5164.281 kb on + strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.282 kb on - strand, within AO353_23585at 5164.290 kb on + strand, within AO353_23585at 5164.291 kb on - strand, within AO353_23585at 5164.291 kb on - strand, within AO353_23585at 5164.308 kb on + strand, within AO353_23585at 5164.308 kb on + strand, within AO353_23585at 5164.419 kb on + strand, within AO353_23585at 5164.420 kb on - strand, within AO353_23585at 5164.425 kb on + strand, within AO353_23585at 5164.425 kb on + strandat 5164.425 kb on + strand, within AO353_23585at 5164.524 kb on + strand, within AO353_23585at 5164.534 kb on - strand, within AO353_23585at 5164.557 kb on + strand, within AO353_23585at 5164.558 kb on - strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.560 kb on + strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.561 kb on - strand, within AO353_23585at 5164.595 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.857 kb on + strand, within AO353_23585at 5164.858 kb on - strand, within AO353_23585at 5164.858 kb on - strand, within AO353_23585at 5164.858 kb on - strand, within AO353_23585at 5164.858 kb on - strand, within AO353_23585at 5164.886 kb on - strand, within AO353_23585at 5164.927 kb on - strand, within AO353_23585at 5164.927 kb on - strand, within AO353_23585at 5164.939 kb on + strand, within AO353_23585at 5164.939 kb on + strand, within AO353_23585at 5164.939 kb on + strand, within AO353_23585at 5164.940 kb on - strand, within AO353_23585at 5164.940 kb on - strand, within AO353_23585at 5164.940 kb on - strand, within AO353_23585at 5164.980 kb on - strand, within AO353_23585at 5164.980 kb on - strand, within AO353_23585at 5164.980 kb on - strand, within AO353_23585at 5164.980 kb on - strand, within AO353_23585

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,162,700 - AO353_23570 0.71 -1.9
5,162,700 - AO353_23570 0.71 +0.8
5,162,707 + AO353_23570 0.71 -1.8
5,162,707 + AO353_23570 0.71 -1.7
5,162,748 - AO353_23570 0.76 +0.3
5,162,748 - AO353_23570 0.76 -0.6
5,162,953 + -0.6
5,162,954 - +0.8
5,162,954 - -0.7
5,163,027 - +0.3
5,163,027 - -0.1
5,163,027 - -0.1
5,163,041 + -2.2
5,163,053 - -0.0
5,163,109 - AO353_23575 0.24 +0.3
5,163,109 - AO353_23575 0.24 +0.3
5,163,158 + AO353_23575 0.45 -0.2
5,163,158 + AO353_23575 0.45 -0.9
5,163,158 + AO353_23575 0.45 +1.2
5,163,159 - AO353_23575 0.46 -0.9
5,163,159 - AO353_23575 0.46 +0.1
5,163,159 - AO353_23575 0.46 +0.7
5,163,160 + AO353_23575 0.46 +0.6
5,163,160 + AO353_23575 0.46 +0.1
5,163,161 - AO353_23575 0.46 -0.5
5,163,161 - AO353_23575 0.46 -2.5
5,163,161 - AO353_23575 0.46 -0.6
5,163,161 - AO353_23575 0.46 -0.7
5,163,161 - AO353_23575 0.46 +0.2
5,163,233 - AO353_23575 0.77 +0.7
5,163,276 + -0.3
5,163,276 + +0.2
5,163,277 - +0.4
5,163,294 - +1.2
5,163,308 + +0.8
5,163,308 + -0.1
5,163,308 + +0.2
5,163,308 + -0.7
5,163,308 + -0.3
5,163,308 + +0.5
5,163,308 + -0.1
5,163,309 - -0.3
5,163,344 - +0.6
5,163,352 + +0.3
5,163,353 - +0.0
5,163,353 - -0.4
5,163,362 + +3.5
5,163,378 + -1.5
5,163,378 + +1.1
5,163,378 + -0.5
5,163,379 - +0.3
5,163,379 - +0.4
5,163,390 - -0.4
5,163,390 - +0.5
5,163,411 + -1.9
5,163,411 + +0.6
5,163,412 - +2.1
5,163,412 - -0.1
5,163,412 - +1.7
5,163,412 - +0.6
5,163,430 + +1.1
5,163,430 + +0.9
5,163,430 + +1.3
5,163,430 + +1.1
5,163,430 + -1.0
5,163,430 + +1.1
5,163,431 - +1.1
5,163,431 - +0.9
5,163,431 - -0.7
5,163,431 - -0.4
5,163,431 - -2.3
5,163,431 - -0.4
5,163,431 - -1.0
5,163,431 - -1.7
5,163,431 - +0.0
5,163,432 + -1.1
5,163,432 + +0.4
5,163,432 + -0.8
5,163,432 + -0.2
5,163,432 + -0.9
5,163,433 - +1.1
5,163,433 - -0.9
5,163,433 - +1.6
5,163,433 - +0.9
5,163,436 + +0.5
5,163,436 + +1.2
5,163,436 + +0.0
5,163,436 + -0.5
5,163,437 - +0.0
5,163,457 - +0.2
5,163,486 + -0.7
5,163,487 - -1.0
5,163,614 - AO353_23580 0.25 +0.4
5,163,614 - AO353_23580 0.25 -0.7
5,163,614 - AO353_23580 0.25 -0.1
5,163,632 + AO353_23580 0.29 +0.5
5,163,633 - AO353_23580 0.29 +0.2
5,163,633 - AO353_23580 0.29 -1.1
5,163,633 - AO353_23580 0.29 -0.1
5,163,649 + AO353_23580 0.32 +0.8
5,163,649 + AO353_23580 0.32 -1.8
5,163,650 - AO353_23580 0.32 +0.3
5,163,650 - AO353_23580 0.32 +1.9
5,163,650 - AO353_23580 0.32 +0.3
5,163,710 - AO353_23580 0.43 +2.0
5,163,710 - AO353_23580 0.43 +1.2
5,163,710 - AO353_23580 0.43 +1.9
5,163,711 + AO353_23580 0.43 +0.4
5,163,712 - AO353_23580 0.43 +1.2
5,163,843 + AO353_23580 0.66 +1.5
5,163,907 + AO353_23580 0.78 +1.6
5,163,907 + AO353_23580 0.78 -0.2
5,163,908 - AO353_23580 0.78 -0.6
5,163,908 - AO353_23580 0.78 +1.1
5,163,995 - -0.5
5,164,018 - -1.7
5,164,272 - AO353_23585 0.13 -2.0
5,164,277 + AO353_23585 0.13 -0.7
5,164,277 + AO353_23585 0.13 -1.3
5,164,277 + AO353_23585 0.13 -1.7
5,164,277 + AO353_23585 0.13 +0.7
5,164,278 - AO353_23585 0.14 +0.3
5,164,278 - AO353_23585 0.14 -0.4
5,164,278 - AO353_23585 0.14 +0.3
5,164,278 - AO353_23585 0.14 -1.4
5,164,278 - AO353_23585 0.14 +0.8
5,164,278 - AO353_23585 0.14 -0.1
5,164,281 + AO353_23585 0.14 -0.4
5,164,281 + AO353_23585 0.14 -0.3
5,164,281 + AO353_23585 0.14 -0.0
5,164,281 + AO353_23585 0.14 +1.5
5,164,282 - AO353_23585 0.14 -0.3
5,164,282 - AO353_23585 0.14 +0.4
5,164,282 - AO353_23585 0.14 +1.5
5,164,282 - AO353_23585 0.14 +0.2
5,164,282 - AO353_23585 0.14 +0.3
5,164,282 - AO353_23585 0.14 -0.9
5,164,290 + AO353_23585 0.15 -2.2
5,164,291 - AO353_23585 0.15 +3.5
5,164,291 - AO353_23585 0.15 +0.1
5,164,308 + AO353_23585 0.16 +0.7
5,164,308 + AO353_23585 0.16 -2.2
5,164,419 + AO353_23585 0.26 -1.4
5,164,420 - AO353_23585 0.26 +0.7
5,164,425 + AO353_23585 0.27 +1.3
5,164,425 + +1.6
5,164,425 + AO353_23585 0.27 -0.5
5,164,524 + AO353_23585 0.36 -2.4
5,164,534 - AO353_23585 0.37 -1.2
5,164,557 + AO353_23585 0.39 -0.7
5,164,558 - AO353_23585 0.39 -0.2
5,164,560 + AO353_23585 0.39 +0.3
5,164,560 + AO353_23585 0.39 +0.0
5,164,560 + AO353_23585 0.39 -2.4
5,164,560 + AO353_23585 0.39 -2.3
5,164,560 + AO353_23585 0.39 +1.6
5,164,560 + AO353_23585 0.39 +0.5
5,164,560 + AO353_23585 0.39 -0.4
5,164,560 + AO353_23585 0.39 +0.9
5,164,560 + AO353_23585 0.39 +0.8
5,164,561 - AO353_23585 0.39 +0.2
5,164,561 - AO353_23585 0.39 -1.7
5,164,561 - AO353_23585 0.39 -1.2
5,164,561 - AO353_23585 0.39 +1.7
5,164,561 - AO353_23585 0.39 +0.4
5,164,561 - AO353_23585 0.39 -0.2
5,164,561 - AO353_23585 0.39 +0.9
5,164,561 - AO353_23585 0.39 -1.8
5,164,595 + AO353_23585 0.42 -0.6
5,164,857 + AO353_23585 0.66 -1.8
5,164,857 + AO353_23585 0.66 +0.8
5,164,857 + AO353_23585 0.66 -1.0
5,164,857 + AO353_23585 0.66 -1.2
5,164,857 + AO353_23585 0.66 +1.9
5,164,857 + AO353_23585 0.66 -1.8
5,164,857 + AO353_23585 0.66 +0.4
5,164,858 - AO353_23585 0.66 -1.4
5,164,858 - AO353_23585 0.66 +0.2
5,164,858 - AO353_23585 0.66 +1.7
5,164,858 - AO353_23585 0.66 -0.6
5,164,886 - AO353_23585 0.69 +0.7
5,164,927 - AO353_23585 0.72 +1.1
5,164,927 - AO353_23585 0.72 -1.3
5,164,939 + AO353_23585 0.73 +1.3
5,164,939 + AO353_23585 0.73 +0.2
5,164,939 + AO353_23585 0.73 -2.2
5,164,940 - AO353_23585 0.74 +0.7
5,164,940 - AO353_23585 0.74 +0.2
5,164,940 - AO353_23585 0.74 +0.4
5,164,980 - AO353_23585 0.77 +0.7
5,164,980 - AO353_23585 0.77 +0.9
5,164,980 - AO353_23585 0.77 -0.4
5,164,980 - AO353_23585 0.77 +0.6

Or see this region's nucleotide sequence