Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23015

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23005 and AO353_23010 are separated by 120 nucleotidesAO353_23010 and AO353_23015 overlap by 25 nucleotidesAO353_23015 and AO353_23020 are separated by 83 nucleotidesAO353_23020 and AO353_23025 are separated by 3 nucleotidesAO353_23025 and AO353_23030 are separated by 314 nucleotides AO353_23005: AO353_23005 - hypothetical protein, at 5,050,481 to 5,050,918 _23005 AO353_23010: AO353_23010 - XRE family transcriptional regulator, at 5,051,039 to 5,051,704 _23010 AO353_23015: AO353_23015 - histidine kinase, at 5,051,680 to 5,053,065 _23015 AO353_23020: AO353_23020 - hypothetical protein, at 5,053,149 to 5,053,520 _23020 AO353_23025: AO353_23025 - Fe-S oxidoreductase, at 5,053,524 to 5,053,697 _23025 AO353_23030: AO353_23030 - sulfate transporter, at 5,054,012 to 5,055,457 _23030 Position (kb) 5051 5052 5053 5054Strain fitness (log2 ratio) -2 -1 0 1 2at 5050.935 kb on + strandat 5050.935 kb on + strandat 5050.936 kb on - strandat 5050.936 kb on - strandat 5050.994 kb on + strandat 5050.994 kb on + strandat 5050.994 kb on + strandat 5050.994 kb on + strandat 5050.995 kb on - strandat 5051.022 kb on + strandat 5051.022 kb on + strandat 5051.022 kb on + strandat 5051.022 kb on + strandat 5051.022 kb on + strandat 5051.022 kb on + strandat 5051.023 kb on - strandat 5051.023 kb on - strandat 5051.023 kb on - strandat 5051.046 kb on + strandat 5051.049 kb on + strandat 5051.049 kb on + strandat 5051.049 kb on + strandat 5051.049 kb on + strandat 5051.111 kb on + strand, within AO353_23010at 5051.111 kb on + strand, within AO353_23010at 5051.112 kb on - strand, within AO353_23010at 5051.112 kb on - strand, within AO353_23010at 5051.171 kb on + strandat 5051.171 kb on + strandat 5051.171 kb on + strand, within AO353_23010at 5051.171 kb on + strand, within AO353_23010at 5051.172 kb on - strand, within AO353_23010at 5051.172 kb on - strand, within AO353_23010at 5051.172 kb on - strand, within AO353_23010at 5051.172 kb on - strand, within AO353_23010at 5051.572 kb on + strand, within AO353_23010at 5051.572 kb on + strand, within AO353_23010at 5051.572 kb on + strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.573 kb on - strand, within AO353_23010at 5051.576 kb on + strand, within AO353_23010at 5051.576 kb on + strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.577 kb on - strand, within AO353_23010at 5051.775 kb on + strandat 5051.938 kb on + strand, within AO353_23015at 5052.604 kb on + strand, within AO353_23015at 5052.651 kb on + strand, within AO353_23015at 5052.652 kb on - strand, within AO353_23015at 5052.753 kb on + strand, within AO353_23015at 5052.753 kb on + strand, within AO353_23015at 5052.754 kb on - strand, within AO353_23015at 5052.754 kb on - strand, within AO353_23015at 5052.774 kb on - strand, within AO353_23015at 5052.774 kb on - strandat 5052.774 kb on - strand, within AO353_23015at 5052.777 kb on + strand, within AO353_23015at 5052.777 kb on + strand, within AO353_23015at 5052.777 kb on + strand, within AO353_23015at 5052.778 kb on - strand, within AO353_23015at 5052.778 kb on - strand, within AO353_23015at 5053.014 kb on - strandat 5053.063 kb on + strandat 5053.129 kb on - strandat 5053.156 kb on + strandat 5053.157 kb on - strandat 5053.157 kb on - strandat 5053.157 kb on - strandat 5053.237 kb on + strand, within AO353_23020at 5053.237 kb on + strand, within AO353_23020at 5053.237 kb on + strand, within AO353_23020at 5053.237 kb on + strand, within AO353_23020at 5053.238 kb on - strand, within AO353_23020at 5053.238 kb on - strand, within AO353_23020at 5053.238 kb on - strand, within AO353_23020at 5053.272 kb on + strand, within AO353_23020at 5053.272 kb on + strand, within AO353_23020at 5053.273 kb on - strand, within AO353_23020at 5053.273 kb on - strand, within AO353_23020at 5053.273 kb on - strand, within AO353_23020at 5053.550 kb on + strand, within AO353_23025at 5053.551 kb on - strand, within AO353_23025at 5053.551 kb on - strand, within AO353_23025at 5053.709 kb on + strandat 5053.723 kb on + strandat 5053.723 kb on + strandat 5053.723 kb on + strandat 5053.732 kb on + strandat 5053.732 kb on + strandat 5053.732 kb on + strandat 5053.732 kb on + strandat 5053.732 kb on + strandat 5053.733 kb on - strandat 5053.733 kb on - strandat 5053.733 kb on - strandat 5053.804 kb on + strandat 5053.805 kb on - strandat 5053.880 kb on + strandat 5053.890 kb on + strandat 5053.891 kb on - strandat 5053.916 kb on - strandat 5054.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,050,935 + +1.0
5,050,935 + +0.3
5,050,936 - -0.6
5,050,936 - +0.6
5,050,994 + -0.8
5,050,994 + +1.2
5,050,994 + -0.0
5,050,994 + -2.0
5,050,995 - -1.4
5,051,022 + +0.8
5,051,022 + +1.2
5,051,022 + +0.6
5,051,022 + -0.2
5,051,022 + +1.6
5,051,022 + -0.5
5,051,023 - +0.1
5,051,023 - -1.1
5,051,023 - +1.0
5,051,046 + -0.6
5,051,049 + +0.4
5,051,049 + +1.2
5,051,049 + +0.2
5,051,049 + +0.5
5,051,111 + AO353_23010 0.11 -0.0
5,051,111 + AO353_23010 0.11 +0.5
5,051,112 - AO353_23010 0.11 -0.8
5,051,112 - AO353_23010 0.11 -1.0
5,051,171 + +0.4
5,051,171 + +0.4
5,051,171 + AO353_23010 0.20 -0.4
5,051,171 + AO353_23010 0.20 -0.8
5,051,172 - AO353_23010 0.20 -1.0
5,051,172 - AO353_23010 0.20 -0.4
5,051,172 - AO353_23010 0.20 +0.6
5,051,172 - AO353_23010 0.20 +0.4
5,051,572 + AO353_23010 0.80 +0.0
5,051,572 + AO353_23010 0.80 +1.5
5,051,572 + AO353_23010 0.80 +1.4
5,051,573 - AO353_23010 0.80 -1.4
5,051,573 - AO353_23010 0.80 -1.7
5,051,573 - AO353_23010 0.80 -1.4
5,051,573 - AO353_23010 0.80 +0.1
5,051,573 - AO353_23010 0.80 -1.4
5,051,573 - AO353_23010 0.80 -0.6
5,051,573 - AO353_23010 0.80 -1.0
5,051,573 - AO353_23010 0.80 -0.7
5,051,576 + AO353_23010 0.81 -0.1
5,051,576 + AO353_23010 0.81 -1.0
5,051,577 - AO353_23010 0.81 +1.5
5,051,577 - AO353_23010 0.81 +0.3
5,051,577 - AO353_23010 0.81 -0.4
5,051,577 - AO353_23010 0.81 +0.1
5,051,577 - AO353_23010 0.81 +0.1
5,051,577 - AO353_23010 0.81 +0.1
5,051,775 + -1.2
5,051,938 + AO353_23015 0.19 -0.6
5,052,604 + AO353_23015 0.67 -1.2
5,052,651 + AO353_23015 0.70 +0.3
5,052,652 - AO353_23015 0.70 +1.4
5,052,753 + AO353_23015 0.77 -1.9
5,052,753 + AO353_23015 0.77 +2.1
5,052,754 - AO353_23015 0.77 -1.1
5,052,754 - AO353_23015 0.77 +0.4
5,052,774 - AO353_23015 0.79 +0.2
5,052,774 - +1.6
5,052,774 - AO353_23015 0.79 -0.4
5,052,777 + AO353_23015 0.79 +0.6
5,052,777 + AO353_23015 0.79 -0.4
5,052,777 + AO353_23015 0.79 +0.8
5,052,778 - AO353_23015 0.79 +0.8
5,052,778 - AO353_23015 0.79 +1.5
5,053,014 - -0.0
5,053,063 + +0.6
5,053,129 - -0.0
5,053,156 + +0.5
5,053,157 - +0.8
5,053,157 - -0.3
5,053,157 - -0.3
5,053,237 + AO353_23020 0.24 -0.4
5,053,237 + AO353_23020 0.24 +0.4
5,053,237 + AO353_23020 0.24 -0.6
5,053,237 + AO353_23020 0.24 +1.0
5,053,238 - AO353_23020 0.24 -1.0
5,053,238 - AO353_23020 0.24 -2.4
5,053,238 - AO353_23020 0.24 +1.5
5,053,272 + AO353_23020 0.33 +0.0
5,053,272 + AO353_23020 0.33 -0.6
5,053,273 - AO353_23020 0.33 -1.4
5,053,273 - AO353_23020 0.33 -1.8
5,053,273 - AO353_23020 0.33 +0.4
5,053,550 + AO353_23025 0.15 +0.2
5,053,551 - AO353_23025 0.16 +1.2
5,053,551 - AO353_23025 0.16 +0.8
5,053,709 + -0.2
5,053,723 + -0.8
5,053,723 + +0.1
5,053,723 + -1.5
5,053,732 + -2.4
5,053,732 + -0.1
5,053,732 + +0.2
5,053,732 + -0.5
5,053,732 + -1.7
5,053,733 - -0.6
5,053,733 - +0.1
5,053,733 - -0.8
5,053,804 + -1.4
5,053,805 - +1.3
5,053,880 + -0.4
5,053,890 + -0.4
5,053,891 - -0.3
5,053,916 - +0.2
5,054,007 - +1.8

Or see this region's nucleotide sequence