Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22855

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22845 and AO353_22850 are separated by 244 nucleotidesAO353_22850 and AO353_22855 are separated by 191 nucleotidesAO353_22855 and AO353_22860 are separated by 58 nucleotides AO353_22845: AO353_22845 - GNAT family acetyltransferase, at 5,008,689 to 5,009,210 _22845 AO353_22850: AO353_22850 - hypothetical protein, at 5,009,455 to 5,009,949 _22850 AO353_22855: AO353_22855 - hypothetical protein, at 5,010,141 to 5,010,362 _22855 AO353_22860: AO353_22860 - cytochrome C oxidase Cbb3, at 5,010,421 to 5,011,848 _22860 Position (kb) 5010 5011Strain fitness (log2 ratio) -2 -1 0 1 2at 5009.276 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.389 kb on - strandat 5009.428 kb on + strandat 5009.465 kb on + strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.494 kb on + strandat 5009.494 kb on + strandat 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5010.033 kb on + strandat 5010.033 kb on + strandat 5010.033 kb on + strandat 5010.034 kb on - strandat 5010.034 kb on - strandat 5010.066 kb on - strandat 5010.304 kb on + strand, within AO353_22855at 5010.304 kb on + strandat 5010.305 kb on - strand, within AO353_22855at 5010.315 kb on + strand, within AO353_22855at 5010.319 kb on + strand, within AO353_22855at 5010.319 kb on + strand, within AO353_22855at 5010.319 kb on + strand, within AO353_22855at 5010.488 kb on + strandat 5010.488 kb on + strandat 5010.488 kb on + strandat 5010.489 kb on - strandat 5010.489 kb on - strandat 5010.584 kb on + strand, within AO353_22860at 5010.585 kb on - strand, within AO353_22860at 5010.585 kb on - strand, within AO353_22860at 5010.585 kb on - strand, within AO353_22860at 5010.585 kb on - strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.662 kb on + strand, within AO353_22860at 5010.720 kb on - strand, within AO353_22860at 5010.720 kb on - strand, within AO353_22860at 5010.720 kb on - strand, within AO353_22860at 5010.720 kb on - strand, within AO353_22860at 5010.720 kb on - strand, within AO353_22860at 5010.758 kb on + strand, within AO353_22860at 5010.759 kb on - strand, within AO353_22860at 5010.833 kb on + strand, within AO353_22860at 5010.948 kb on + strand, within AO353_22860at 5010.949 kb on - strand, within AO353_22860at 5010.949 kb on - strand, within AO353_22860at 5010.949 kb on - strand, within AO353_22860at 5011.094 kb on + strand, within AO353_22860at 5011.094 kb on + strand, within AO353_22860at 5011.095 kb on - strand, within AO353_22860at 5011.095 kb on - strand, within AO353_22860at 5011.142 kb on + strandat 5011.142 kb on + strand, within AO353_22860at 5011.142 kb on + strand, within AO353_22860at 5011.142 kb on + strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.143 kb on - strand, within AO353_22860at 5011.175 kb on + strand, within AO353_22860at 5011.176 kb on - strand, within AO353_22860at 5011.178 kb on + strand, within AO353_22860at 5011.178 kb on + strand, within AO353_22860at 5011.178 kb on + strand, within AO353_22860at 5011.178 kb on + strand, within AO353_22860at 5011.179 kb on - strand, within AO353_22860at 5011.179 kb on - strand, within AO353_22860at 5011.179 kb on - strand, within AO353_22860at 5011.268 kb on + strand, within AO353_22860at 5011.269 kb on - strand, within AO353_22860at 5011.269 kb on - strand, within AO353_22860

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,009,276 - +0.8
5,009,305 - +0.1
5,009,305 - -0.3
5,009,305 - -1.3
5,009,305 - -1.2
5,009,389 - -0.4
5,009,428 + -1.6
5,009,465 + +0.1
5,009,466 - +1.3
5,009,466 - -1.0
5,009,466 - +0.2
5,009,466 - +1.1
5,009,466 - +0.6
5,009,466 - +1.2
5,009,494 + +1.1
5,009,494 + -1.1
5,009,641 + AO353_22850 0.38 -0.5
5,009,641 + AO353_22850 0.38 -0.6
5,009,641 + AO353_22850 0.38 -2.2
5,009,641 + AO353_22850 0.38 -1.6
5,009,641 + AO353_22850 0.38 -1.4
5,009,641 + AO353_22850 0.38 +0.5
5,009,641 + AO353_22850 0.38 +0.1
5,009,641 + AO353_22850 0.38 +1.1
5,009,642 - AO353_22850 0.38 +2.0
5,009,642 - AO353_22850 0.38 -0.6
5,009,642 - AO353_22850 0.38 +0.4
5,010,033 + -0.0
5,010,033 + +0.2
5,010,033 + +1.5
5,010,034 - -1.2
5,010,034 - +0.8
5,010,066 - -0.5
5,010,304 + AO353_22855 0.73 -0.6
5,010,304 + +0.4
5,010,305 - AO353_22855 0.74 -1.1
5,010,315 + AO353_22855 0.78 +0.2
5,010,319 + AO353_22855 0.80 -0.2
5,010,319 + AO353_22855 0.80 -0.6
5,010,319 + AO353_22855 0.80 -0.2
5,010,488 + +0.8
5,010,488 + -0.1
5,010,488 + +1.4
5,010,489 - +0.2
5,010,489 - +0.6
5,010,584 + AO353_22860 0.11 -0.1
5,010,585 - AO353_22860 0.11 -1.2
5,010,585 - AO353_22860 0.11 -0.8
5,010,585 - AO353_22860 0.11 -0.2
5,010,585 - AO353_22860 0.11 -0.0
5,010,662 + AO353_22860 0.17 +1.8
5,010,662 + AO353_22860 0.17 -1.0
5,010,662 + AO353_22860 0.17 +1.2
5,010,662 + AO353_22860 0.17 +0.3
5,010,662 + AO353_22860 0.17 +0.5
5,010,662 + AO353_22860 0.17 +0.7
5,010,720 - AO353_22860 0.21 +1.0
5,010,720 - AO353_22860 0.21 -0.8
5,010,720 - AO353_22860 0.21 +0.7
5,010,720 - AO353_22860 0.21 -1.3
5,010,720 - AO353_22860 0.21 -0.0
5,010,758 + AO353_22860 0.24 -0.5
5,010,759 - AO353_22860 0.24 +0.2
5,010,833 + AO353_22860 0.29 -1.7
5,010,948 + AO353_22860 0.37 +0.5
5,010,949 - AO353_22860 0.37 +0.7
5,010,949 - AO353_22860 0.37 +1.0
5,010,949 - AO353_22860 0.37 -1.2
5,011,094 + AO353_22860 0.47 -0.1
5,011,094 + AO353_22860 0.47 -1.5
5,011,095 - AO353_22860 0.47 +1.1
5,011,095 - AO353_22860 0.47 -1.5
5,011,142 + +1.0
5,011,142 + AO353_22860 0.50 -0.4
5,011,142 + AO353_22860 0.50 +0.9
5,011,142 + AO353_22860 0.50 -1.7
5,011,143 - AO353_22860 0.51 +1.4
5,011,143 - AO353_22860 0.51 +0.4
5,011,143 - AO353_22860 0.51 -0.6
5,011,143 - AO353_22860 0.51 +0.2
5,011,143 - AO353_22860 0.51 -0.4
5,011,143 - AO353_22860 0.51 -0.4
5,011,175 + AO353_22860 0.53 +0.2
5,011,176 - AO353_22860 0.53 +1.3
5,011,178 + AO353_22860 0.53 +0.1
5,011,178 + AO353_22860 0.53 -1.1
5,011,178 + AO353_22860 0.53 -0.0
5,011,178 + AO353_22860 0.53 +0.1
5,011,179 - AO353_22860 0.53 -1.8
5,011,179 - AO353_22860 0.53 -0.8
5,011,179 - AO353_22860 0.53 +1.2
5,011,268 + AO353_22860 0.59 +0.6
5,011,269 - AO353_22860 0.59 -0.4
5,011,269 - AO353_22860 0.59 -0.7

Or see this region's nucleotide sequence