Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20965

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20965 and AO353_20970 are separated by 396 nucleotides AO353_20965: AO353_20965 - hypothetical protein, at 4,582,956 to 4,583,177 _20965 AO353_20970: AO353_20970 - hypothetical protein, at 4,583,574 to 4,583,963 _20970 Position (kb) 4582 4583 4584Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4581.993 kb on + strandat 4581.993 kb on + strandat 4581.993 kb on + strandat 4581.993 kb on + strandat 4581.993 kb on + strandat 4581.994 kb on - strandat 4581.994 kb on - strandat 4581.994 kb on - strandat 4581.994 kb on - strandat 4582.009 kb on + strandat 4582.010 kb on - strandat 4582.010 kb on - strandat 4582.010 kb on - strandat 4582.014 kb on + strandat 4582.014 kb on + strandat 4582.014 kb on + strandat 4582.015 kb on - strandat 4582.015 kb on - strandat 4582.068 kb on + strandat 4582.068 kb on + strandat 4582.069 kb on - strandat 4582.069 kb on - strandat 4582.125 kb on + strandat 4582.138 kb on + strandat 4582.138 kb on + strandat 4582.138 kb on + strandat 4582.138 kb on + strandat 4582.139 kb on - strandat 4582.139 kb on - strandat 4582.193 kb on + strandat 4582.193 kb on + strandat 4582.193 kb on + strandat 4582.194 kb on - strandat 4582.194 kb on - strandat 4582.194 kb on - strandat 4582.194 kb on - strandat 4582.194 kb on - strandat 4582.351 kb on + strandat 4582.352 kb on - strandat 4582.352 kb on - strandat 4582.352 kb on - strandat 4582.352 kb on - strandat 4582.423 kb on + strandat 4582.424 kb on - strandat 4582.467 kb on - strandat 4582.552 kb on - strandat 4582.552 kb on - strandat 4582.595 kb on - strandat 4582.625 kb on + strandat 4582.626 kb on - strandat 4582.647 kb on - strandat 4582.685 kb on + strandat 4582.686 kb on - strandat 4582.686 kb on - strandat 4582.728 kb on - strandat 4582.728 kb on - strandat 4582.728 kb on - strandat 4582.742 kb on + strandat 4582.743 kb on - strandat 4582.743 kb on - strandat 4582.743 kb on - strandat 4582.819 kb on + strandat 4582.819 kb on + strandat 4582.820 kb on - strandat 4582.820 kb on - strandat 4582.863 kb on + strandat 4582.863 kb on + strandat 4582.863 kb on + strandat 4582.863 kb on + strandat 4582.864 kb on - strandat 4582.864 kb on - strandat 4582.864 kb on - strandat 4582.864 kb on - strandat 4582.864 kb on - strandat 4582.864 kb on - strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.867 kb on + strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.868 kb on - strandat 4582.899 kb on - strandat 4582.916 kb on + strandat 4582.917 kb on - strandat 4582.917 kb on - strandat 4582.917 kb on - strandat 4582.936 kb on + strandat 4582.937 kb on - strandat 4582.981 kb on + strand, within AO353_20965at 4582.981 kb on + strand, within AO353_20965at 4582.981 kb on + strand, within AO353_20965at 4582.981 kb on + strand, within AO353_20965at 4582.981 kb on + strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4582.982 kb on - strand, within AO353_20965at 4583.060 kb on + strand, within AO353_20965at 4583.060 kb on + strand, within AO353_20965at 4583.060 kb on + strand, within AO353_20965at 4583.060 kb on + strand, within AO353_20965at 4583.138 kb on + strand, within AO353_20965at 4583.139 kb on - strand, within AO353_20965at 4583.139 kb on - strand, within AO353_20965at 4583.139 kb on - strand, within AO353_20965at 4583.139 kb on - strand, within AO353_20965at 4583.142 kb on + strand, within AO353_20965at 4583.142 kb on + strand, within AO353_20965at 4583.143 kb on - strand, within AO353_20965at 4583.143 kb on - strand, within AO353_20965at 4583.143 kb on - strand, within AO353_20965at 4583.146 kb on + strandat 4583.146 kb on + strand, within AO353_20965at 4583.146 kb on + strand, within AO353_20965at 4583.175 kb on + strandat 4583.175 kb on + strandat 4583.176 kb on - strandat 4583.176 kb on - strandat 4583.176 kb on - strandat 4583.301 kb on + strandat 4583.301 kb on + strandat 4583.301 kb on + strandat 4583.301 kb on + strandat 4583.302 kb on - strandat 4583.302 kb on - strandat 4583.302 kb on - strandat 4583.302 kb on - strandat 4583.302 kb on - strandat 4583.309 kb on + strandat 4583.309 kb on + strandat 4583.309 kb on + strandat 4583.310 kb on - strandat 4583.310 kb on - strandat 4583.415 kb on - strandat 4583.415 kb on - strandat 4583.415 kb on - strandat 4583.431 kb on + strandat 4583.431 kb on + strandat 4583.432 kb on - strandat 4583.432 kb on - strandat 4583.459 kb on + strandat 4583.460 kb on - strandat 4583.473 kb on + strandat 4583.474 kb on - strandat 4583.474 kb on - strandat 4583.585 kb on - strandat 4583.669 kb on + strand, within AO353_20970at 4583.669 kb on + strand, within AO353_20970at 4583.796 kb on + strand, within AO353_20970at 4583.796 kb on + strand, within AO353_20970at 4583.796 kb on + strand, within AO353_20970at 4583.797 kb on - strand, within AO353_20970at 4583.797 kb on - strand, within AO353_20970at 4583.798 kb on + strand, within AO353_20970at 4583.835 kb on + strand, within AO353_20970at 4583.835 kb on + strand, within AO353_20970at 4583.839 kb on + strand, within AO353_20970at 4583.839 kb on + strand, within AO353_20970at 4583.839 kb on + strand, within AO353_20970at 4583.839 kb on + strand, within AO353_20970at 4583.840 kb on - strand, within AO353_20970at 4583.843 kb on + strand, within AO353_20970at 4583.907 kb on + strand, within AO353_20970at 4583.908 kb on - strand, within AO353_20970at 4583.908 kb on - strand, within AO353_20970at 4583.938 kb on + strandat 4583.961 kb on + strandat 4583.977 kb on + strandat 4583.977 kb on + strandat 4583.977 kb on + strandat 4583.977 kb on + strandat 4583.978 kb on - strandat 4583.978 kb on - strandat 4583.978 kb on - strandat 4584.057 kb on + strandat 4584.057 kb on + strandat 4584.084 kb on - strandat 4584.155 kb on + strandat 4584.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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4,581,993 + +2.5
4,581,993 + -0.8
4,581,993 + +0.2
4,581,993 + +0.2
4,581,993 + -1.2
4,581,994 - -0.3
4,581,994 - +4.0
4,581,994 - +0.4
4,581,994 - -1.1
4,582,009 + +0.6
4,582,010 - +0.5
4,582,010 - -0.3
4,582,010 - +0.7
4,582,014 + +0.7
4,582,014 + +0.5
4,582,014 + +0.2
4,582,015 - +0.2
4,582,015 - +1.0
4,582,068 + -0.8
4,582,068 + +0.3
4,582,069 - -0.6
4,582,069 - +1.0
4,582,125 + -1.3
4,582,138 + -0.3
4,582,138 + +1.0
4,582,138 + +0.0
4,582,138 + +1.9
4,582,139 - -0.0
4,582,139 - -0.1
4,582,193 + -0.2
4,582,193 + -1.1
4,582,193 + -0.5
4,582,194 - -1.4
4,582,194 - +1.0
4,582,194 - +1.2
4,582,194 - +0.0
4,582,194 - +0.6
4,582,351 + +1.4
4,582,352 - +0.2
4,582,352 - -0.7
4,582,352 - -1.0
4,582,352 - +0.0
4,582,423 + -1.1
4,582,424 - -0.0
4,582,467 - +1.0
4,582,552 - -0.4
4,582,552 - +1.6
4,582,595 - +0.5
4,582,625 + -0.3
4,582,626 - -0.3
4,582,647 - -1.1
4,582,685 + +0.0
4,582,686 - +2.0
4,582,686 - +0.3
4,582,728 - +0.6
4,582,728 - -0.0
4,582,728 - -0.4
4,582,742 + +0.5
4,582,743 - +0.6
4,582,743 - +1.6
4,582,743 - +0.4
4,582,819 + +0.6
4,582,819 + +0.7
4,582,820 - +0.6
4,582,820 - +0.5
4,582,863 + +1.6
4,582,863 + +0.2
4,582,863 + +0.5
4,582,863 + -0.2
4,582,864 - -0.4
4,582,864 - +1.1
4,582,864 - +0.4
4,582,864 - -0.3
4,582,864 - -1.0
4,582,864 - -0.2
4,582,867 + -1.0
4,582,867 + -1.1
4,582,867 + +0.2
4,582,867 + -1.0
4,582,867 + -1.0
4,582,867 + -0.5
4,582,867 + -0.5
4,582,867 + -0.3
4,582,868 - -0.3
4,582,868 - +0.5
4,582,868 - +0.0
4,582,868 - +0.9
4,582,868 - -0.8
4,582,868 - +0.6
4,582,868 - -1.0
4,582,868 - -1.1
4,582,899 - -0.1
4,582,916 + -1.3
4,582,917 - -0.3
4,582,917 - +1.0
4,582,917 - +0.1
4,582,936 + +1.0
4,582,937 - -0.8
4,582,981 + AO353_20965 0.11 -1.3
4,582,981 + AO353_20965 0.11 +0.5
4,582,981 + AO353_20965 0.11 -0.7
4,582,981 + AO353_20965 0.11 -0.0
4,582,981 + AO353_20965 0.11 +1.4
4,582,982 - AO353_20965 0.12 +1.3
4,582,982 - AO353_20965 0.12 +0.0
4,582,982 - AO353_20965 0.12 +0.7
4,582,982 - AO353_20965 0.12 +1.2
4,582,982 - AO353_20965 0.12 +0.1
4,582,982 - AO353_20965 0.12 -1.0
4,582,982 - AO353_20965 0.12 -0.1
4,582,982 - AO353_20965 0.12 +1.7
4,582,982 - AO353_20965 0.12 +0.5
4,583,060 + AO353_20965 0.47 +0.8
4,583,060 + AO353_20965 0.47 +1.9
4,583,060 + AO353_20965 0.47 +0.8
4,583,060 + AO353_20965 0.47 +0.5
4,583,138 + AO353_20965 0.82 -0.7
4,583,139 - AO353_20965 0.82 +1.6
4,583,139 - AO353_20965 0.82 -0.3
4,583,139 - AO353_20965 0.82 +0.6
4,583,139 - AO353_20965 0.82 +0.0
4,583,142 + AO353_20965 0.84 +2.6
4,583,142 + AO353_20965 0.84 -1.0
4,583,143 - AO353_20965 0.84 +0.2
4,583,143 - AO353_20965 0.84 -0.1
4,583,143 - AO353_20965 0.84 -0.2
4,583,146 + +0.5
4,583,146 + AO353_20965 0.86 +1.0
4,583,146 + AO353_20965 0.86 -0.4
4,583,175 + +0.9
4,583,175 + -0.2
4,583,176 - -0.3
4,583,176 - -0.7
4,583,176 - +0.2
4,583,301 + +0.1
4,583,301 + +0.5
4,583,301 + +2.3
4,583,301 + -0.3
4,583,302 - +1.2
4,583,302 - -1.0
4,583,302 - -0.7
4,583,302 - -0.3
4,583,302 - +1.7
4,583,309 + -0.8
4,583,309 + +0.9
4,583,309 + -1.4
4,583,310 - +1.0
4,583,310 - -0.2
4,583,415 - -1.5
4,583,415 - +0.5
4,583,415 - -0.8
4,583,431 + -1.1
4,583,431 + -0.0
4,583,432 - -0.5
4,583,432 - -1.6
4,583,459 + +0.4
4,583,460 - -1.1
4,583,473 + -0.7
4,583,474 - +1.0
4,583,474 - +0.5
4,583,585 - -0.3
4,583,669 + AO353_20970 0.24 -2.2
4,583,669 + AO353_20970 0.24 +1.0
4,583,796 + AO353_20970 0.57 -0.4
4,583,796 + AO353_20970 0.57 -0.3
4,583,796 + AO353_20970 0.57 +0.3
4,583,797 - AO353_20970 0.57 +0.9
4,583,797 - AO353_20970 0.57 -1.4
4,583,798 + AO353_20970 0.57 -0.8
4,583,835 + AO353_20970 0.67 -1.0
4,583,835 + AO353_20970 0.67 -1.2
4,583,839 + AO353_20970 0.68 +0.5
4,583,839 + AO353_20970 0.68 -1.4
4,583,839 + AO353_20970 0.68 +0.2
4,583,839 + AO353_20970 0.68 -1.1
4,583,840 - AO353_20970 0.68 +0.8
4,583,843 + AO353_20970 0.69 -0.1
4,583,907 + AO353_20970 0.85 -0.9
4,583,908 - AO353_20970 0.86 -0.8
4,583,908 - AO353_20970 0.86 +1.7
4,583,938 + -1.9
4,583,961 + -0.1
4,583,977 + -2.3
4,583,977 + +0.1
4,583,977 + +1.7
4,583,977 + -0.7
4,583,978 - +1.4
4,583,978 - +2.0
4,583,978 - +1.7
4,584,057 + -0.3
4,584,057 + -0.2
4,584,084 - -0.8
4,584,155 + -1.3
4,584,155 + +0.5

Or see this region's nucleotide sequence