Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09820 and AO353_09825 are separated by 85 nucleotides AO353_09825 and AO353_09830 are separated by 188 nucleotides AO353_09830 and AO353_09835 are separated by 34 nucleotides AO353_09835 and AO353_09840 are separated by 201 nucleotides AO353_09840 and AO353_09845 overlap by 1 nucleotides
AO353_09820: AO353_09820 - hypothetical protein, at 2,146,373 to 2,146,852
_09820
AO353_09825: AO353_09825 - integration host factor, at 2,146,938 to 2,147,213
_09825
AO353_09830: AO353_09830 - pyridine nucleotide-disulfide oxidoreductase, at 2,147,402 to 2,148,550
_09830
AO353_09835: AO353_09835 - rubredoxin, at 2,148,585 to 2,148,755
_09835
AO353_09840: AO353_09840 - chorismate--pyruvate lyase, at 2,148,957 to 2,149,520
_09840
AO353_09845: AO353_09845 - 4-hydroxybenzoate octaprenyltransferase, at 2,149,520 to 2,150,410
_09845
Position (kb)
2147
2148
2149 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2146.402 kb on - strand at 2146.402 kb on - strand at 2146.402 kb on - strand at 2146.402 kb on - strand at 2146.402 kb on - strand at 2146.402 kb on - strand at 2146.404 kb on + strand at 2146.404 kb on + strand at 2146.405 kb on - strand at 2146.405 kb on - strand at 2146.475 kb on - strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.497 kb on + strand, within AO353_09820 at 2146.498 kb on - strand at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.498 kb on - strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.508 kb on + strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.509 kb on - strand, within AO353_09820 at 2146.689 kb on + strand, within AO353_09820 at 2146.689 kb on + strand, within AO353_09820 at 2146.690 kb on - strand, within AO353_09820 at 2146.690 kb on - strand, within AO353_09820 at 2146.694 kb on - strand, within AO353_09820 at 2146.694 kb on - strand, within AO353_09820 at 2146.703 kb on + strand, within AO353_09820 at 2146.704 kb on - strand, within AO353_09820 at 2146.704 kb on - strand, within AO353_09820 at 2146.704 kb on - strand, within AO353_09820 at 2146.704 kb on - strand, within AO353_09820 at 2146.745 kb on + strand, within AO353_09820 at 2146.746 kb on - strand, within AO353_09820 at 2146.771 kb on + strand, within AO353_09820 at 2146.771 kb on + strand, within AO353_09820 at 2146.771 kb on + strand, within AO353_09820 at 2146.772 kb on - strand, within AO353_09820 at 2146.772 kb on - strand, within AO353_09820 at 2146.790 kb on + strand, within AO353_09820 at 2146.790 kb on + strand, within AO353_09820 at 2146.791 kb on - strand, within AO353_09820 at 2146.791 kb on - strand, within AO353_09820 at 2146.791 kb on - strand, within AO353_09820 at 2146.831 kb on - strand at 2146.831 kb on - strand at 2146.831 kb on - strand at 2146.851 kb on - strand at 2146.851 kb on - strand at 2146.932 kb on + strand at 2146.932 kb on + strand at 2146.932 kb on + strand at 2146.932 kb on + strand at 2146.933 kb on - strand at 2146.933 kb on - strand at 2147.069 kb on + strand, within AO353_09825 at 2147.069 kb on + strand, within AO353_09825 at 2147.099 kb on + strand, within AO353_09825 at 2147.100 kb on - strand, within AO353_09825 at 2147.207 kb on + strand at 2147.207 kb on + strand at 2147.208 kb on - strand at 2147.208 kb on - strand at 2147.208 kb on - strand at 2147.208 kb on - strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.245 kb on + strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.246 kb on - strand at 2147.293 kb on + strand at 2147.293 kb on + strand at 2147.294 kb on - strand at 2147.361 kb on + strand at 2147.361 kb on + strand at 2147.403 kb on + strand at 2147.404 kb on - strand at 2147.432 kb on + strand at 2147.433 kb on - strand at 2147.473 kb on - strand at 2147.622 kb on + strand, within AO353_09830 at 2147.622 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.694 kb on + strand, within AO353_09830 at 2147.695 kb on - strand, within AO353_09830 at 2147.695 kb on - strand, within AO353_09830 at 2147.695 kb on - strand, within AO353_09830 at 2147.695 kb on - strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.739 kb on + strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.740 kb on - strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.743 kb on + strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.744 kb on - strand, within AO353_09830 at 2147.923 kb on + strand, within AO353_09830 at 2147.923 kb on + strand, within AO353_09830 at 2147.923 kb on + strand, within AO353_09830 at 2147.923 kb on + strand, within AO353_09830 at 2147.923 kb on + strand, within AO353_09830 at 2148.153 kb on + strand, within AO353_09830 at 2148.153 kb on + strand, within AO353_09830 at 2148.153 kb on + strand, within AO353_09830 at 2148.317 kb on - strand, within AO353_09830 at 2148.429 kb on + strand, within AO353_09830 at 2148.429 kb on + strand, within AO353_09830 at 2148.429 kb on + strand, within AO353_09830 at 2148.430 kb on - strand, within AO353_09830 at 2148.430 kb on - strand, within AO353_09830 at 2148.430 kb on - strand, within AO353_09830 at 2148.430 kb on - strand, within AO353_09830 at 2148.507 kb on + strand at 2148.508 kb on - strand at 2148.508 kb on - strand at 2148.508 kb on - strand at 2148.508 kb on - strand at 2148.508 kb on - strand at 2148.508 kb on - strand at 2148.555 kb on + strand at 2148.556 kb on - strand at 2148.556 kb on - strand at 2148.556 kb on - strand at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.718 kb on + strand, within AO353_09835 at 2148.719 kb on - strand, within AO353_09835 at 2148.719 kb on - strand, within AO353_09835 at 2148.719 kb on - strand, within AO353_09835 at 2148.756 kb on + strand at 2148.756 kb on + strand at 2148.756 kb on + strand at 2148.757 kb on - strand at 2148.757 kb on - strand at 2148.785 kb on - strand at 2148.839 kb on + strand at 2148.881 kb on - strand at 2148.918 kb on + strand at 2148.919 kb on - strand at 2148.945 kb on + strand at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.203 kb on + strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.204 kb on - strand, within AO353_09840 at 2149.283 kb on + strand, within AO353_09840 at 2149.284 kb on - strand, within AO353_09840 at 2149.284 kb on - strand, within AO353_09840 at 2149.368 kb on + strand, within AO353_09840 at 2149.468 kb on + strand at 2149.468 kb on + strand at 2149.468 kb on + strand at 2149.468 kb on + strand at 2149.468 kb on + strand at 2149.469 kb on - strand at 2149.469 kb on - strand at 2149.523 kb on + strand at 2149.523 kb on + strand at 2149.523 kb on + strand at 2149.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 2,146,402 - +0.4 2,146,402 - +0.2 2,146,402 - -0.4 2,146,402 - -0.6 2,146,402 - +0.8 2,146,402 - +1.2 2,146,404 + -0.1 2,146,404 + -1.7 2,146,405 - -0.7 2,146,405 - -0.3 2,146,475 - AO353_09820 0.21 +1.3 2,146,497 + AO353_09820 0.26 -0.3 2,146,497 + AO353_09820 0.26 +0.2 2,146,497 + AO353_09820 0.26 -1.1 2,146,497 + AO353_09820 0.26 +0.3 2,146,497 + AO353_09820 0.26 -0.4 2,146,497 + AO353_09820 0.26 -0.2 2,146,497 + AO353_09820 0.26 -1.4 2,146,498 - +2.4 2,146,498 - AO353_09820 0.26 -0.0 2,146,498 - AO353_09820 0.26 +0.2 2,146,498 - AO353_09820 0.26 -0.5 2,146,498 - AO353_09820 0.26 +1.3 2,146,498 - AO353_09820 0.26 -0.4 2,146,498 - AO353_09820 0.26 -0.4 2,146,498 - AO353_09820 0.26 -1.1 2,146,508 + AO353_09820 0.28 -0.1 2,146,508 + AO353_09820 0.28 -1.2 2,146,508 + AO353_09820 0.28 +0.5 2,146,508 + AO353_09820 0.28 +0.5 2,146,508 + AO353_09820 0.28 +0.4 2,146,508 + AO353_09820 0.28 +0.7 2,146,509 - AO353_09820 0.28 +0.2 2,146,509 - AO353_09820 0.28 +0.0 2,146,509 - AO353_09820 0.28 -1.2 2,146,509 - AO353_09820 0.28 -0.8 2,146,509 - AO353_09820 0.28 -1.8 2,146,509 - AO353_09820 0.28 +0.6 2,146,509 - AO353_09820 0.28 -1.2 2,146,689 + AO353_09820 0.66 +0.7 2,146,689 + AO353_09820 0.66 -0.8 2,146,690 - AO353_09820 0.66 +0.7 2,146,690 - AO353_09820 0.66 -0.3 2,146,694 - AO353_09820 0.67 -0.4 2,146,694 - AO353_09820 0.67 +1.7 2,146,703 + AO353_09820 0.69 -1.0 2,146,704 - AO353_09820 0.69 +0.8 2,146,704 - AO353_09820 0.69 +0.4 2,146,704 - AO353_09820 0.69 -2.0 2,146,704 - AO353_09820 0.69 -0.0 2,146,745 + AO353_09820 0.78 +0.0 2,146,746 - AO353_09820 0.78 +0.2 2,146,771 + AO353_09820 0.83 -0.4 2,146,771 + AO353_09820 0.83 +0.1 2,146,771 + AO353_09820 0.83 +0.0 2,146,772 - AO353_09820 0.83 +1.0 2,146,772 - AO353_09820 0.83 +0.1 2,146,790 + AO353_09820 0.87 -1.1 2,146,790 + AO353_09820 0.87 +1.0 2,146,791 - AO353_09820 0.87 -1.3 2,146,791 - AO353_09820 0.87 +0.3 2,146,791 - AO353_09820 0.87 -0.4 2,146,831 - -0.6 2,146,831 - +0.4 2,146,831 - -1.6 2,146,851 - -1.0 2,146,851 - -0.3 2,146,932 + +1.0 2,146,932 + -2.1 2,146,932 + +0.3 2,146,932 + -0.4 2,146,933 - -1.3 2,146,933 - -1.4 2,147,069 + AO353_09825 0.47 -0.6 2,147,069 + AO353_09825 0.47 -0.7 2,147,099 + AO353_09825 0.58 +0.2 2,147,100 - AO353_09825 0.59 +2.3 2,147,207 + -0.4 2,147,207 + +1.4 2,147,208 - -0.6 2,147,208 - -0.1 2,147,208 - -0.7 2,147,208 - +0.2 2,147,245 + -0.1 2,147,245 + -0.8 2,147,245 + -0.6 2,147,245 + +1.4 2,147,245 + -0.8 2,147,245 + -1.1 2,147,245 + +1.0 2,147,245 + +0.7 2,147,245 + +0.8 2,147,245 + -1.4 2,147,245 + +0.4 2,147,245 + +0.0 2,147,246 - +0.4 2,147,246 - +0.4 2,147,246 - -0.7 2,147,246 - +0.3 2,147,246 - -0.6 2,147,246 - -1.0 2,147,246 - +0.4 2,147,246 - -0.9 2,147,246 - -1.3 2,147,246 - +0.9 2,147,246 - -1.2 2,147,246 - -0.4 2,147,293 + +0.6 2,147,293 + +1.2 2,147,294 - -0.9 2,147,361 + +1.2 2,147,361 + -1.4 2,147,403 + +0.2 2,147,404 - +0.4 2,147,432 + +0.3 2,147,433 - -1.2 2,147,473 - +0.0 2,147,622 + AO353_09830 0.19 -1.4 2,147,622 + AO353_09830 0.19 +1.5 2,147,694 + AO353_09830 0.25 +1.5 2,147,694 + AO353_09830 0.25 -0.1 2,147,694 + AO353_09830 0.25 -0.3 2,147,694 + AO353_09830 0.25 -0.7 2,147,694 + AO353_09830 0.25 +2.2 2,147,694 + AO353_09830 0.25 +0.1 2,147,694 + AO353_09830 0.25 +0.9 2,147,694 + AO353_09830 0.25 -1.5 2,147,695 - AO353_09830 0.26 +2.5 2,147,695 - AO353_09830 0.26 -0.2 2,147,695 - AO353_09830 0.26 +0.8 2,147,695 - AO353_09830 0.26 +0.5 2,147,739 + AO353_09830 0.29 +0.6 2,147,739 + AO353_09830 0.29 +1.1 2,147,739 + AO353_09830 0.29 -0.3 2,147,739 + AO353_09830 0.29 -0.0 2,147,739 + AO353_09830 0.29 +0.9 2,147,739 + AO353_09830 0.29 -2.3 2,147,739 + AO353_09830 0.29 -0.3 2,147,739 + AO353_09830 0.29 +0.5 2,147,740 - AO353_09830 0.29 +1.7 2,147,740 - AO353_09830 0.29 -0.7 2,147,740 - AO353_09830 0.29 -1.8 2,147,740 - AO353_09830 0.29 +1.2 2,147,740 - AO353_09830 0.29 -0.6 2,147,740 - AO353_09830 0.29 +0.4 2,147,740 - AO353_09830 0.29 +1.6 2,147,740 - AO353_09830 0.29 +0.3 2,147,743 + AO353_09830 0.30 -1.0 2,147,743 + AO353_09830 0.30 +0.3 2,147,743 + AO353_09830 0.30 +0.6 2,147,743 + AO353_09830 0.30 +1.3 2,147,743 + AO353_09830 0.30 -1.1 2,147,743 + AO353_09830 0.30 +1.3 2,147,743 + AO353_09830 0.30 +0.2 2,147,744 - AO353_09830 0.30 +0.4 2,147,744 - AO353_09830 0.30 -0.5 2,147,744 - AO353_09830 0.30 -0.3 2,147,744 - AO353_09830 0.30 -0.5 2,147,744 - AO353_09830 0.30 +0.3 2,147,744 - AO353_09830 0.30 +0.4 2,147,744 - AO353_09830 0.30 +0.2 2,147,923 + AO353_09830 0.45 -0.6 2,147,923 + AO353_09830 0.45 +0.7 2,147,923 + AO353_09830 0.45 +0.2 2,147,923 + AO353_09830 0.45 +0.6 2,147,923 + AO353_09830 0.45 +1.2 2,148,153 + AO353_09830 0.65 -1.2 2,148,153 + AO353_09830 0.65 +0.4 2,148,153 + AO353_09830 0.65 -0.5 2,148,317 - AO353_09830 0.80 +0.7 2,148,429 + AO353_09830 0.89 +0.3 2,148,429 + AO353_09830 0.89 +1.2 2,148,429 + AO353_09830 0.89 +1.0 2,148,430 - AO353_09830 0.89 +2.3 2,148,430 - AO353_09830 0.89 -0.7 2,148,430 - AO353_09830 0.89 +1.6 2,148,430 - AO353_09830 0.89 +0.5 2,148,507 + +1.0 2,148,508 - +0.4 2,148,508 - +0.7 2,148,508 - -0.4 2,148,508 - +0.8 2,148,508 - +1.2 2,148,508 - +0.5 2,148,555 + +1.4 2,148,556 - -0.6 2,148,556 - -0.7 2,148,556 - -0.4 2,148,718 + AO353_09835 0.78 +0.7 2,148,718 + AO353_09835 0.78 +0.5 2,148,718 + AO353_09835 0.78 +0.6 2,148,718 + AO353_09835 0.78 +0.0 2,148,718 + AO353_09835 0.78 +1.2 2,148,718 + AO353_09835 0.78 +0.3 2,148,718 + AO353_09835 0.78 -0.1 2,148,719 - AO353_09835 0.78 -0.5 2,148,719 - AO353_09835 0.78 +0.5 2,148,719 - AO353_09835 0.78 +0.7 2,148,756 + -1.0 2,148,756 + -1.0 2,148,756 + +0.1 2,148,757 - -1.1 2,148,757 - -2.5 2,148,785 - -1.6 2,148,839 + +0.1 2,148,881 - +0.4 2,148,918 + -1.4 2,148,919 - -0.4 2,148,945 + -1.0 2,149,203 + AO353_09840 0.44 -1.1 2,149,203 + AO353_09840 0.44 -0.3 2,149,203 + AO353_09840 0.44 -0.0 2,149,203 + AO353_09840 0.44 +1.4 2,149,203 + AO353_09840 0.44 -0.4 2,149,203 + AO353_09840 0.44 +0.7 2,149,203 + AO353_09840 0.44 +0.4 2,149,203 + AO353_09840 0.44 -0.5 2,149,203 + AO353_09840 0.44 -0.4 2,149,204 - AO353_09840 0.44 -1.1 2,149,204 - AO353_09840 0.44 +0.3 2,149,204 - AO353_09840 0.44 +1.2 2,149,204 - AO353_09840 0.44 -0.2 2,149,204 - AO353_09840 0.44 +1.2 2,149,204 - AO353_09840 0.44 -1.8 2,149,204 - AO353_09840 0.44 +0.7 2,149,204 - AO353_09840 0.44 -0.3 2,149,283 + AO353_09840 0.58 -0.4 2,149,284 - AO353_09840 0.58 +0.2 2,149,284 - AO353_09840 0.58 +0.2 2,149,368 + AO353_09840 0.73 +1.6 2,149,468 + -0.3 2,149,468 + -0.4 2,149,468 + +1.9 2,149,468 + +1.6 2,149,468 + -0.5 2,149,469 - +1.7 2,149,469 - -1.1 2,149,523 + +0.1 2,149,523 + -0.3 2,149,523 + +1.6 2,149,523 + +0.2
Or see this region's nucleotide sequence