Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09595

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09585 and AO353_09590 are separated by 82 nucleotidesAO353_09590 and AO353_09595 overlap by 4 nucleotidesAO353_09595 and AO353_09600 are separated by 67 nucleotidesAO353_09600 and AO353_09605 overlap by 7 nucleotides AO353_09585: AO353_09585 - Hcp1 family type VI secretion system effector, at 2,104,476 to 2,104,964 _09585 AO353_09590: AO353_09590 - hypothetical protein, at 2,105,047 to 2,105,505 _09590 AO353_09595: AO353_09595 - hypothetical protein, at 2,105,502 to 2,105,942 _09595 AO353_09600: AO353_09600 - hypothetical protein, at 2,106,010 to 2,106,450 _09600 AO353_09605: AO353_09605 - type VI secretion system lysozyme, at 2,106,444 to 2,106,956 _09605 Position (kb) 2105 2106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2104.592 kb on + strandat 2104.592 kb on + strand, within AO353_09585at 2104.592 kb on + strand, within AO353_09585at 2104.593 kb on - strand, within AO353_09585at 2104.593 kb on - strand, within AO353_09585at 2104.656 kb on + strand, within AO353_09585at 2104.656 kb on + strand, within AO353_09585at 2104.656 kb on + strand, within AO353_09585at 2104.656 kb on + strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.657 kb on - strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.764 kb on + strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.765 kb on - strand, within AO353_09585at 2104.881 kb on + strand, within AO353_09585at 2104.881 kb on + strand, within AO353_09585at 2104.881 kb on + strand, within AO353_09585at 2104.962 kb on + strandat 2104.963 kb on - strandat 2104.984 kb on + strandat 2105.064 kb on + strandat 2105.064 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.068 kb on - strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.100 kb on + strand, within AO353_09590at 2105.101 kb on - strand, within AO353_09590at 2105.157 kb on + strand, within AO353_09590at 2105.157 kb on + strand, within AO353_09590at 2105.158 kb on - strand, within AO353_09590at 2105.158 kb on - strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.361 kb on + strand, within AO353_09590at 2105.362 kb on - strand, within AO353_09590at 2105.468 kb on - strandat 2105.527 kb on + strandat 2105.527 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.543 kb on - strandat 2105.602 kb on + strand, within AO353_09595at 2105.602 kb on + strand, within AO353_09595at 2105.603 kb on - strand, within AO353_09595at 2105.603 kb on - strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.657 kb on - strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.826 kb on + strand, within AO353_09595at 2105.826 kb on + strand, within AO353_09595at 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.940 kb on + strandat 2105.940 kb on + strandat 2105.941 kb on - strandat 2105.941 kb on - strandat 2105.941 kb on - strandat 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.388 kb on - strand, within AO353_09600at 2106.388 kb on - strand, within AO353_09600at 2106.653 kb on + strand, within AO353_09605at 2106.780 kb on - strand, within AO353_09605

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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2,104,592 + -0.1
2,104,592 + AO353_09585 0.24 +0.7
2,104,592 + AO353_09585 0.24 -0.5
2,104,593 - AO353_09585 0.24 -1.6
2,104,593 - AO353_09585 0.24 +0.1
2,104,656 + AO353_09585 0.37 -1.2
2,104,656 + AO353_09585 0.37 -0.6
2,104,656 + AO353_09585 0.37 -0.7
2,104,656 + AO353_09585 0.37 -0.6
2,104,657 - AO353_09585 0.37 +0.7
2,104,657 - AO353_09585 0.37 +0.1
2,104,657 - AO353_09585 0.37 -0.3
2,104,657 - AO353_09585 0.37 -0.4
2,104,657 - AO353_09585 0.37 -0.2
2,104,657 - AO353_09585 0.37 +1.9
2,104,657 - AO353_09585 0.37 +1.2
2,104,657 - AO353_09585 0.37 +1.0
2,104,657 - AO353_09585 0.37 -1.6
2,104,657 - AO353_09585 0.37 -2.8
2,104,657 - AO353_09585 0.37 +0.9
2,104,764 + AO353_09585 0.59 +1.0
2,104,764 + AO353_09585 0.59 +0.7
2,104,764 + AO353_09585 0.59 -0.1
2,104,764 + AO353_09585 0.59 -0.6
2,104,764 + AO353_09585 0.59 -1.7
2,104,764 + AO353_09585 0.59 +0.7
2,104,764 + AO353_09585 0.59 -0.7
2,104,764 + AO353_09585 0.59 +0.3
2,104,765 - AO353_09585 0.59 +0.7
2,104,765 - AO353_09585 0.59 -1.3
2,104,765 - AO353_09585 0.59 +0.2
2,104,765 - AO353_09585 0.59 -0.8
2,104,765 - AO353_09585 0.59 -0.2
2,104,765 - AO353_09585 0.59 +0.7
2,104,765 - AO353_09585 0.59 -0.5
2,104,765 - AO353_09585 0.59 +0.6
2,104,881 + AO353_09585 0.83 +0.0
2,104,881 + AO353_09585 0.83 -0.9
2,104,881 + AO353_09585 0.83 -1.8
2,104,962 + +0.4
2,104,963 - +0.6
2,104,984 + +2.5
2,105,064 + +0.1
2,105,064 + +1.3
2,105,067 + -0.9
2,105,067 + +0.2
2,105,067 + -0.6
2,105,067 + +2.1
2,105,067 + -0.6
2,105,068 - -1.2
2,105,083 + -2.3
2,105,083 + -0.2
2,105,083 + +0.3
2,105,083 + +0.3
2,105,083 + -0.3
2,105,100 + AO353_09590 0.12 +0.4
2,105,101 - AO353_09590 0.12 -0.8
2,105,157 + AO353_09590 0.24 +0.6
2,105,157 + AO353_09590 0.24 -0.1
2,105,158 - AO353_09590 0.24 +1.2
2,105,158 - AO353_09590 0.24 -1.0
2,105,205 + AO353_09590 0.34 +1.0
2,105,205 + AO353_09590 0.34 +0.7
2,105,205 + AO353_09590 0.34 -1.0
2,105,205 + AO353_09590 0.34 +0.4
2,105,205 + AO353_09590 0.34 +1.7
2,105,205 + AO353_09590 0.34 -0.5
2,105,205 + AO353_09590 0.34 -0.4
2,105,205 + AO353_09590 0.34 +1.3
2,105,206 - AO353_09590 0.35 -2.1
2,105,206 - AO353_09590 0.35 -0.7
2,105,206 - AO353_09590 0.35 -0.3
2,105,206 - AO353_09590 0.35 -2.2
2,105,206 - AO353_09590 0.35 +2.0
2,105,206 - AO353_09590 0.35 -1.1
2,105,206 - AO353_09590 0.35 -0.6
2,105,209 + AO353_09590 0.35 +1.7
2,105,209 + AO353_09590 0.35 +0.2
2,105,209 + AO353_09590 0.35 -0.8
2,105,209 + AO353_09590 0.35 -0.4
2,105,209 + AO353_09590 0.35 -0.3
2,105,209 + AO353_09590 0.35 +0.8
2,105,209 + AO353_09590 0.35 +0.8
2,105,209 + AO353_09590 0.35 +0.7
2,105,209 + AO353_09590 0.35 +1.9
2,105,210 - AO353_09590 0.36 +0.4
2,105,210 - AO353_09590 0.36 -0.6
2,105,210 - AO353_09590 0.36 +1.4
2,105,210 - AO353_09590 0.36 +1.2
2,105,210 - AO353_09590 0.36 +1.6
2,105,210 - AO353_09590 0.36 -1.7
2,105,210 - AO353_09590 0.36 +0.2
2,105,210 - AO353_09590 0.36 -0.4
2,105,210 - AO353_09590 0.36 -0.1
2,105,210 - AO353_09590 0.36 +1.4
2,105,210 - AO353_09590 0.36 +1.7
2,105,361 + AO353_09590 0.68 -1.7
2,105,362 - AO353_09590 0.69 +0.5
2,105,468 - -0.3
2,105,527 + -0.4
2,105,527 + +1.2
2,105,542 + -0.1
2,105,542 + -1.1
2,105,542 + -0.8
2,105,542 + -0.5
2,105,543 - -1.0
2,105,602 + AO353_09595 0.23 +1.7
2,105,602 + AO353_09595 0.23 +1.6
2,105,603 - AO353_09595 0.23 +0.7
2,105,603 - AO353_09595 0.23 -1.0
2,105,656 + AO353_09595 0.35 -0.8
2,105,656 + AO353_09595 0.35 -0.1
2,105,656 + AO353_09595 0.35 +0.7
2,105,657 - AO353_09595 0.35 +0.4
2,105,785 + AO353_09595 0.64 +1.4
2,105,785 + AO353_09595 0.64 +0.0
2,105,785 + AO353_09595 0.64 -1.8
2,105,785 + AO353_09595 0.64 +0.7
2,105,785 + AO353_09595 0.64 -1.9
2,105,785 + AO353_09595 0.64 +0.2
2,105,785 + AO353_09595 0.64 -0.6
2,105,785 + AO353_09595 0.64 -1.1
2,105,785 + AO353_09595 0.64 +0.4
2,105,786 - AO353_09595 0.64 +0.5
2,105,786 - AO353_09595 0.64 +0.2
2,105,786 - AO353_09595 0.64 -0.2
2,105,786 - AO353_09595 0.64 +2.2
2,105,786 - AO353_09595 0.64 +0.8
2,105,786 - AO353_09595 0.64 -0.7
2,105,826 + AO353_09595 0.73 +2.4
2,105,826 + AO353_09595 0.73 +1.0
2,105,919 + -1.7
2,105,919 + +0.9
2,105,919 + +0.3
2,105,919 + -0.7
2,105,919 + +1.0
2,105,920 - +0.3
2,105,920 - +0.6
2,105,920 - -1.9
2,105,920 - +1.2
2,105,920 - +0.9
2,105,920 - -1.0
2,105,920 - +0.7
2,105,940 + -0.1
2,105,940 + -0.2
2,105,941 - +1.0
2,105,941 - +0.6
2,105,941 - +0.7
2,106,194 + AO353_09600 0.42 -0.5
2,106,194 + AO353_09600 0.42 -1.4
2,106,194 + AO353_09600 0.42 +2.0
2,106,194 + AO353_09600 0.42 +0.6
2,106,195 - AO353_09600 0.42 +4.2
2,106,195 - AO353_09600 0.42 +0.6
2,106,195 - AO353_09600 0.42 -0.7
2,106,195 - AO353_09600 0.42 -1.0
2,106,195 - AO353_09600 0.42 +1.1
2,106,195 - AO353_09600 0.42 -0.5
2,106,195 - AO353_09600 0.42 -1.0
2,106,195 - AO353_09600 0.42 +1.6
2,106,195 - AO353_09600 0.42 +2.3
2,106,195 - AO353_09600 0.42 +0.7
2,106,195 - AO353_09600 0.42 -1.5
2,106,195 - AO353_09600 0.42 -1.3
2,106,195 - AO353_09600 0.42 -1.5
2,106,195 - AO353_09600 0.42 -0.9
2,106,387 + AO353_09600 0.85 +1.2
2,106,387 + AO353_09600 0.85 +0.4
2,106,387 + AO353_09600 0.85 -0.5
2,106,388 - AO353_09600 0.86 +0.3
2,106,388 - AO353_09600 0.86 -1.5
2,106,653 + AO353_09605 0.41 +0.4
2,106,780 - AO353_09605 0.65 +0.9

Or see this region's nucleotide sequence