Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09500

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09485 and AO353_09490 are separated by 5 nucleotidesAO353_09490 and AO353_09495 overlap by 1 nucleotidesAO353_09495 and AO353_09500 overlap by 1 nucleotidesAO353_09500 and AO353_09505 are separated by 152 nucleotidesAO353_09505 and AO353_09510 are separated by 207 nucleotides AO353_09485: AO353_09485 - hypothetical protein, at 2,081,362 to 2,081,580 _09485 AO353_09490: AO353_09490 - hypothetical protein, at 2,081,586 to 2,082,017 _09490 AO353_09495: AO353_09495 - hypothetical protein, at 2,082,017 to 2,082,403 _09495 AO353_09500: AO353_09500 - hypothetical protein, at 2,082,403 to 2,082,816 _09500 AO353_09505: AO353_09505 - hypothetical protein, at 2,082,969 to 2,083,355 _09505 AO353_09510: AO353_09510 - type VI secretion-associated lipoprotein TagQ, at 2,083,563 to 2,084,492 _09510 Position (kb) 2082 2083Strain fitness (log2 ratio) -2 -1 0 1 2at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.403 kb on - strand, within AO353_09485at 2081.552 kb on + strand, within AO353_09485at 2081.553 kb on - strand, within AO353_09485at 2081.560 kb on + strandat 2081.560 kb on + strandat 2081.605 kb on + strandat 2081.605 kb on + strandat 2081.605 kb on + strandat 2081.606 kb on - strandat 2081.606 kb on - strandat 2081.606 kb on - strandat 2081.628 kb on - strandat 2081.692 kb on + strand, within AO353_09490at 2081.759 kb on - strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.760 kb on + strand, within AO353_09490at 2081.813 kb on - strand, within AO353_09490at 2081.813 kb on - strand, within AO353_09490at 2081.844 kb on + strand, within AO353_09490at 2081.845 kb on - strand, within AO353_09490at 2081.866 kb on + strand, within AO353_09490at 2082.110 kb on - strand, within AO353_09495at 2082.110 kb on - strand, within AO353_09495at 2082.130 kb on - strand, within AO353_09495at 2082.150 kb on - strand, within AO353_09495at 2082.168 kb on + strand, within AO353_09495at 2082.224 kb on + strand, within AO353_09495at 2082.225 kb on - strand, within AO353_09495at 2082.225 kb on - strand, within AO353_09495at 2082.235 kb on - strand, within AO353_09495at 2082.246 kb on + strand, within AO353_09495at 2082.247 kb on - strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.258 kb on + strand, within AO353_09495at 2082.259 kb on - strand, within AO353_09495at 2082.370 kb on + strandat 2082.371 kb on - strandat 2082.502 kb on - strand, within AO353_09500at 2082.517 kb on + strand, within AO353_09500at 2082.517 kb on + strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.518 kb on - strand, within AO353_09500at 2082.591 kb on - strand, within AO353_09500at 2082.629 kb on + strand, within AO353_09500at 2082.629 kb on + strand, within AO353_09500at 2082.630 kb on - strand, within AO353_09500at 2082.630 kb on - strand, within AO353_09500at 2082.679 kb on - strand, within AO353_09500at 2082.683 kb on + strand, within AO353_09500at 2082.789 kb on - strandat 2082.789 kb on - strandat 2082.921 kb on - strandat 2082.978 kb on - strandat 2083.056 kb on - strand, within AO353_09505at 2083.170 kb on + strand, within AO353_09505at 2083.171 kb on - strand, within AO353_09505at 2083.224 kb on + strand, within AO353_09505at 2083.224 kb on + strand, within AO353_09505at 2083.257 kb on - strand, within AO353_09505at 2083.267 kb on + strand, within AO353_09505at 2083.326 kb on - strandat 2083.340 kb on + strandat 2083.348 kb on - strandat 2083.441 kb on + strandat 2083.448 kb on + strandat 2083.473 kb on + strandat 2083.473 kb on + strandat 2083.473 kb on + strandat 2083.474 kb on - strandat 2083.474 kb on - strandat 2083.550 kb on + strandat 2083.551 kb on - strandat 2083.551 kb on - strandat 2083.551 kb on - strandat 2083.551 kb on - strandat 2083.551 kb on - strandat 2083.758 kb on + strand, within AO353_09510at 2083.758 kb on + strand, within AO353_09510

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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2,081,403 - AO353_09485 0.19 +0.8
2,081,403 - AO353_09485 0.19 -0.1
2,081,403 - AO353_09485 0.19 +0.7
2,081,403 - AO353_09485 0.19 +0.8
2,081,552 + AO353_09485 0.87 +1.7
2,081,553 - AO353_09485 0.87 -0.3
2,081,560 + -1.0
2,081,560 + -0.4
2,081,605 + +1.1
2,081,605 + -1.2
2,081,605 + -1.2
2,081,606 - +1.3
2,081,606 - -2.2
2,081,606 - +0.0
2,081,628 - -0.3
2,081,692 + AO353_09490 0.25 -0.3
2,081,759 - AO353_09490 0.40 -1.2
2,081,760 + AO353_09490 0.40 +0.4
2,081,760 + AO353_09490 0.40 +0.3
2,081,760 + AO353_09490 0.40 +0.1
2,081,813 - AO353_09490 0.53 +1.7
2,081,813 - AO353_09490 0.53 +0.9
2,081,844 + AO353_09490 0.60 +0.1
2,081,845 - AO353_09490 0.60 +0.4
2,081,866 + AO353_09490 0.65 -0.9
2,082,110 - AO353_09495 0.24 -0.9
2,082,110 - AO353_09495 0.24 -0.9
2,082,130 - AO353_09495 0.29 -0.3
2,082,150 - AO353_09495 0.34 -0.5
2,082,168 + AO353_09495 0.39 +2.6
2,082,224 + AO353_09495 0.53 +0.3
2,082,225 - AO353_09495 0.54 -0.1
2,082,225 - AO353_09495 0.54 -0.4
2,082,235 - AO353_09495 0.56 -0.3
2,082,246 + AO353_09495 0.59 -0.3
2,082,247 - AO353_09495 0.59 -1.2
2,082,258 + AO353_09495 0.62 -0.5
2,082,258 + AO353_09495 0.62 +0.7
2,082,258 + AO353_09495 0.62 +0.5
2,082,259 - AO353_09495 0.63 +1.6
2,082,370 + +0.2
2,082,371 - +0.0
2,082,502 - AO353_09500 0.24 +0.8
2,082,517 + AO353_09500 0.28 +0.9
2,082,517 + AO353_09500 0.28 +1.5
2,082,518 - AO353_09500 0.28 +0.7
2,082,518 - AO353_09500 0.28 +1.1
2,082,518 - AO353_09500 0.28 +0.5
2,082,518 - AO353_09500 0.28 +0.3
2,082,518 - AO353_09500 0.28 +2.1
2,082,518 - AO353_09500 0.28 +1.5
2,082,518 - AO353_09500 0.28 +0.2
2,082,518 - AO353_09500 0.28 +0.7
2,082,591 - AO353_09500 0.45 +2.1
2,082,629 + AO353_09500 0.55 -0.8
2,082,629 + AO353_09500 0.55 +0.5
2,082,630 - AO353_09500 0.55 +0.1
2,082,630 - AO353_09500 0.55 +0.4
2,082,679 - AO353_09500 0.67 +1.1
2,082,683 + AO353_09500 0.68 -0.2
2,082,789 - +0.9
2,082,789 - +0.6
2,082,921 - +0.7
2,082,978 - -0.2
2,083,056 - AO353_09505 0.22 +1.1
2,083,170 + AO353_09505 0.52 -0.8
2,083,171 - AO353_09505 0.52 -0.4
2,083,224 + AO353_09505 0.66 +1.7
2,083,224 + AO353_09505 0.66 +0.6
2,083,257 - AO353_09505 0.74 +1.6
2,083,267 + AO353_09505 0.77 +0.2
2,083,326 - +0.4
2,083,340 + +0.1
2,083,348 - -0.9
2,083,441 + +0.7
2,083,448 + -1.0
2,083,473 + +0.2
2,083,473 + -0.6
2,083,473 + +0.5
2,083,474 - -0.4
2,083,474 - +0.5
2,083,550 + +0.8
2,083,551 - -1.7
2,083,551 - +1.0
2,083,551 - +1.5
2,083,551 - +1.2
2,083,551 - +2.7
2,083,758 + AO353_09510 0.21 +1.7
2,083,758 + AO353_09510 0.21 -1.5

Or see this region's nucleotide sequence