Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08370

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08365 and AO353_08370 are separated by 132 nucleotidesAO353_08370 and AO353_08375 are separated by 85 nucleotides AO353_08365: AO353_08365 - L-cystine transporter tcyP, at 1,839,326 to 1,840,717 _08365 AO353_08370: AO353_08370 - diacylglycerol kinase, at 1,840,850 to 1,841,362 _08370 AO353_08375: AO353_08375 - hypothetical protein, at 1,841,448 to 1,842,827 _08375 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1840.047 kb on + strand, within AO353_08365at 1840.047 kb on + strand, within AO353_08365at 1840.127 kb on + strand, within AO353_08365at 1840.127 kb on + strand, within AO353_08365at 1840.127 kb on + strand, within AO353_08365at 1840.127 kb on + strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.128 kb on - strand, within AO353_08365at 1840.301 kb on - strand, within AO353_08365at 1840.345 kb on + strand, within AO353_08365at 1840.345 kb on + strand, within AO353_08365at 1840.346 kb on - strand, within AO353_08365at 1840.346 kb on - strand, within AO353_08365at 1840.346 kb on - strand, within AO353_08365at 1840.643 kb on - strandat 1840.715 kb on + strandat 1840.715 kb on + strandat 1840.715 kb on + strandat 1840.716 kb on - strandat 1840.716 kb on - strandat 1840.716 kb on - strandat 1840.725 kb on - strandat 1840.725 kb on - strandat 1840.734 kb on + strandat 1840.734 kb on + strandat 1840.735 kb on - strandat 1840.735 kb on - strandat 1840.735 kb on - strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.810 kb on + strandat 1840.811 kb on - strandat 1840.811 kb on - strandat 1840.811 kb on - strandat 1840.851 kb on + strandat 1840.851 kb on + strandat 1840.851 kb on + strandat 1840.852 kb on - strandat 1841.375 kb on - strandat 1841.413 kb on + strandat 1841.683 kb on + strand, within AO353_08375at 1841.821 kb on + strand, within AO353_08375at 1841.822 kb on - strand, within AO353_08375at 1841.822 kb on - strand, within AO353_08375at 1841.835 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1842.243 kb on + strand, within AO353_08375at 1842.243 kb on + strand, within AO353_08375at 1842.339 kb on + strand, within AO353_08375

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,840,047 + AO353_08365 0.52 -2.3
1,840,047 + AO353_08365 0.52 +1.1
1,840,127 + AO353_08365 0.58 -0.3
1,840,127 + AO353_08365 0.58 -1.6
1,840,127 + AO353_08365 0.58 -2.1
1,840,127 + AO353_08365 0.58 +1.0
1,840,128 - AO353_08365 0.58 -1.3
1,840,128 - AO353_08365 0.58 -0.4
1,840,128 - AO353_08365 0.58 -1.6
1,840,128 - AO353_08365 0.58 -0.9
1,840,128 - AO353_08365 0.58 -1.1
1,840,128 - AO353_08365 0.58 +0.3
1,840,301 - AO353_08365 0.70 -0.4
1,840,345 + AO353_08365 0.73 +0.2
1,840,345 + AO353_08365 0.73 +0.7
1,840,346 - AO353_08365 0.73 -0.7
1,840,346 - AO353_08365 0.73 -0.6
1,840,346 - AO353_08365 0.73 +0.1
1,840,643 - -1.8
1,840,715 + -0.6
1,840,715 + +0.1
1,840,715 + -2.2
1,840,716 - -0.6
1,840,716 - -0.3
1,840,716 - +0.2
1,840,725 - -0.6
1,840,725 - -0.8
1,840,734 + -1.8
1,840,734 + +0.5
1,840,735 - -1.6
1,840,735 - +1.4
1,840,735 - -0.6
1,840,788 + -1.0
1,840,788 + -0.7
1,840,788 + -1.8
1,840,788 + -0.6
1,840,788 + -0.6
1,840,788 + -1.4
1,840,788 + -1.7
1,840,788 + +0.1
1,840,788 + -1.1
1,840,788 + -0.1
1,840,789 - -0.4
1,840,789 - +0.6
1,840,789 - -0.8
1,840,789 - -0.1
1,840,789 - -1.9
1,840,789 - +0.2
1,840,789 - -0.2
1,840,789 - +0.7
1,840,789 - -0.5
1,840,810 + -1.6
1,840,811 - -1.0
1,840,811 - +1.2
1,840,811 - -0.3
1,840,851 + -1.0
1,840,851 + +0.9
1,840,851 + +0.6
1,840,852 - +1.0
1,841,375 - +0.6
1,841,413 + +0.7
1,841,683 + AO353_08375 0.17 +0.8
1,841,821 + AO353_08375 0.27 +0.2
1,841,822 - AO353_08375 0.27 +1.5
1,841,822 - AO353_08375 0.27 +0.9
1,841,835 + AO353_08375 0.28 +0.8
1,841,857 + AO353_08375 0.30 -1.4
1,841,857 + AO353_08375 0.30 +1.1
1,841,857 + AO353_08375 0.30 -2.0
1,841,857 + AO353_08375 0.30 +1.0
1,841,857 + AO353_08375 0.30 -0.2
1,841,857 + AO353_08375 0.30 -1.6
1,841,857 + AO353_08375 0.30 +2.9
1,841,857 + AO353_08375 0.30 +0.8
1,841,857 + AO353_08375 0.30 -1.8
1,841,858 - AO353_08375 0.30 -0.1
1,841,858 - AO353_08375 0.30 +0.9
1,841,858 - AO353_08375 0.30 +0.0
1,841,858 - AO353_08375 0.30 +1.8
1,841,858 - AO353_08375 0.30 -2.2
1,842,243 + AO353_08375 0.58 +0.6
1,842,243 + AO353_08375 0.58 +0.8
1,842,339 + AO353_08375 0.65 +1.4

Or see this region's nucleotide sequence