Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06060

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06050 and AO353_06055 are separated by 154 nucleotidesAO353_06055 and AO353_06060 are separated by 146 nucleotidesAO353_06060 and AO353_06065 are separated by 227 nucleotidesAO353_06065 and AO353_06070 are separated by 34 nucleotidesAO353_06070 and AO353_06075 are separated by 72 nucleotides AO353_06050: AO353_06050 - exodeoxyribonuclease V subunit gamma, at 1,346,383 to 1,349,835 _06050 AO353_06055: AO353_06055 - 5S ribosomal RNA, at 1,349,990 to 1,350,105 _06055 AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164 _06060 AO353_06065: AO353_06065 - tRNA-Ala, at 1,353,392 to 1,353,467 _06065 AO353_06070: AO353_06070 - tRNA-Ile, at 1,353,502 to 1,353,578 _06070 AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197 _06075 Position (kb) 1350 1351 1352 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2at 1349.415 kb on + strand, within AO353_06050at 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.803 kb on - strandat 1349.864 kb on + strandat 1349.864 kb on + strandat 1349.865 kb on - strandat 1349.865 kb on - strandat 1349.877 kb on + strandat 1349.877 kb on + strandat 1349.925 kb on + strandat 1349.925 kb on + strandat 1349.925 kb on + strandat 1349.926 kb on - strandat 1349.926 kb on - strandat 1349.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,349,415 + AO353_06050 0.88 +0.3
1,349,803 - -1.4
1,349,803 - -1.1
1,349,803 - +1.1
1,349,803 - +2.2
1,349,864 + -0.2
1,349,864 + -0.2
1,349,865 - -0.4
1,349,865 - -1.8
1,349,877 + +1.0
1,349,877 + -0.2
1,349,925 + -0.4
1,349,925 + -0.2
1,349,925 + +0.1
1,349,926 - +1.7
1,349,926 - -0.5
1,349,926 - -0.3

Or see this region's nucleotide sequence