Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004524 and ABIE53_004525 overlap by 74 nucleotides ABIE53_004525 and ABIE53_004526 are separated by 105 nucleotides ABIE53_004526 and ABIE53_004527 are separated by 40 nucleotides ABIE53_004527 and ABIE53_004528 are separated by 8 nucleotides
ABIE53_004524: ABIE53_004524 - ABC-type glycerol-3-phosphate transport system substrate-binding protein, at 713,992 to 715,335
_004524
ABIE53_004525: ABIE53_004525 - hypothetical protein, at 715,262 to 715,732
_004525
ABIE53_004526: ABIE53_004526 - uncharacterized protein (DUF1697 family), at 715,838 to 716,347
_004526
ABIE53_004527: ABIE53_004527 - putative metal-binding membrane protein, at 716,388 to 717,215
_004527
ABIE53_004528: ABIE53_004528 - putative dithiol-disulfide oxidoreductase (DUF899 family), at 717,224 to 717,991
_004528
Position (kb) 715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 714.935 kb on - strand, within ABIE53_004524 at 714.950 kb on - strand, within ABIE53_004524 at 715.059 kb on - strand, within ABIE53_004524 at 715.250 kb on + strand at 715.250 kb on + strand at 715.250 kb on + strand at 715.250 kb on + strand at 715.340 kb on + strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.365 kb on - strand, within ABIE53_004525 at 715.385 kb on + strand, within ABIE53_004525 at 715.439 kb on + strand, within ABIE53_004525 at 715.730 kb on + strand at 715.812 kb on + strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.813 kb on - strand at 715.816 kb on - strand at 715.834 kb on + strand at 715.834 kb on + strand at 715.835 kb on - strand at 715.835 kb on - strand at 715.859 kb on + strand at 715.944 kb on + strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 715.945 kb on - strand, within ABIE53_004526 at 716.093 kb on + strand, within ABIE53_004526 at 716.094 kb on - strand, within ABIE53_004526 at 716.231 kb on - strand, within ABIE53_004526 at 716.231 kb on - strand, within ABIE53_004526 at 716.232 kb on + strand, within ABIE53_004526 at 716.233 kb on - strand, within ABIE53_004526 at 716.336 kb on - strand at 716.364 kb on + strand at 716.389 kb on + strand at 716.390 kb on - strand at 716.443 kb on + strand at 716.451 kb on - strand at 716.507 kb on + strand, within ABIE53_004527 at 716.508 kb on - strand, within ABIE53_004527 at 716.733 kb on + strand, within ABIE53_004527 at 716.910 kb on - strand, within ABIE53_004527 at 716.910 kb on - strand, within ABIE53_004527 at 717.237 kb on + strand at 717.307 kb on - strand, within ABIE53_004528 at 717.307 kb on - strand, within ABIE53_004528 at 717.339 kb on + strand, within ABIE53_004528 at 717.340 kb on - strand, within ABIE53_004528 at 717.340 kb on - strand, within ABIE53_004528
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 714,935 - ABIE53_004524 0.70 -0.3 714,950 - ABIE53_004524 0.71 -0.6 715,059 - ABIE53_004524 0.79 -0.5 715,250 + -0.7 715,250 + +0.6 715,250 + -3.1 715,250 + +0.1 715,340 + ABIE53_004525 0.17 -0.6 715,365 - ABIE53_004525 0.22 -0.9 715,365 - ABIE53_004525 0.22 +2.3 715,365 - ABIE53_004525 0.22 -0.5 715,385 + ABIE53_004525 0.26 -1.0 715,439 + ABIE53_004525 0.38 -0.4 715,730 + -0.2 715,812 + -0.6 715,813 - -1.3 715,813 - -2.4 715,813 - -1.3 715,813 - -1.8 715,816 - +1.1 715,834 + +0.1 715,834 + -1.5 715,835 - +1.1 715,835 - -0.3 715,859 + +0.1 715,944 + ABIE53_004526 0.21 +1.1 715,945 - ABIE53_004526 0.21 +0.1 715,945 - ABIE53_004526 0.21 -0.6 715,945 - ABIE53_004526 0.21 -0.7 716,093 + ABIE53_004526 0.50 +0.9 716,094 - ABIE53_004526 0.50 +0.5 716,231 - ABIE53_004526 0.77 +0.1 716,231 - ABIE53_004526 0.77 -0.8 716,232 + ABIE53_004526 0.77 +0.6 716,233 - ABIE53_004526 0.77 -0.2 716,336 - -0.9 716,364 + +1.4 716,389 + -1.1 716,390 - -2.4 716,443 + -1.7 716,451 - -0.4 716,507 + ABIE53_004527 0.14 -1.3 716,508 - ABIE53_004527 0.14 -1.8 716,733 + ABIE53_004527 0.42 -0.9 716,910 - ABIE53_004527 0.63 -2.3 716,910 - ABIE53_004527 0.63 -1.3 717,237 + -0.7 717,307 - ABIE53_004528 0.11 +0.7 717,307 - ABIE53_004528 0.11 +0.9 717,339 + ABIE53_004528 0.15 +2.7 717,340 - ABIE53_004528 0.15 -0.3 717,340 - ABIE53_004528 0.15 +2.7
Or see this region's nucleotide sequence