Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000803

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000802 and ABIE53_000803 are separated by 111 nucleotidesABIE53_000803 and ABIE53_000804 are separated by 34 nucleotidesABIE53_000804 and ABIE53_000805 are separated by 44 nucleotides ABIE53_000802: ABIE53_000802 - putative porin, at 870,771 to 871,883 _000802 ABIE53_000803: ABIE53_000803 - lactoylglutathione lyase, at 871,995 to 872,381 _000803 ABIE53_000804: ABIE53_000804 - putative metal-dependent hydrolase, at 872,416 to 873,285 _000804 ABIE53_000805: ABIE53_000805 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 873,330 to 874,088 _000805 Position (kb) 871 872 873Strain fitness (log2 ratio) -2 -1 0 1 2 3at 871.026 kb on + strand, within ABIE53_000802at 871.026 kb on + strand, within ABIE53_000802at 871.026 kb on + strand, within ABIE53_000802at 871.026 kb on + strand, within ABIE53_000802at 871.026 kb on + strand, within ABIE53_000802at 871.027 kb on - strand, within ABIE53_000802at 871.027 kb on - strand, within ABIE53_000802at 871.027 kb on - strand, within ABIE53_000802at 871.027 kb on - strand, within ABIE53_000802at 871.027 kb on - strand, within ABIE53_000802at 871.102 kb on - strand, within ABIE53_000802at 871.102 kb on - strand, within ABIE53_000802at 871.128 kb on + strand, within ABIE53_000802at 871.128 kb on + strand, within ABIE53_000802at 871.128 kb on + strand, within ABIE53_000802at 871.128 kb on + strand, within ABIE53_000802at 871.128 kb on + strand, within ABIE53_000802at 871.129 kb on - strand, within ABIE53_000802at 871.129 kb on - strand, within ABIE53_000802at 871.129 kb on - strand, within ABIE53_000802at 871.129 kb on - strand, within ABIE53_000802at 871.129 kb on - strand, within ABIE53_000802at 871.157 kb on - strand, within ABIE53_000802at 871.189 kb on - strand, within ABIE53_000802at 871.254 kb on + strand, within ABIE53_000802at 871.255 kb on - strand, within ABIE53_000802at 871.255 kb on - strand, within ABIE53_000802at 871.255 kb on - strand, within ABIE53_000802at 871.255 kb on - strand, within ABIE53_000802at 871.266 kb on + strand, within ABIE53_000802at 871.267 kb on - strand, within ABIE53_000802at 871.293 kb on + strand, within ABIE53_000802at 871.323 kb on + strand, within ABIE53_000802at 871.323 kb on + strand, within ABIE53_000802at 871.353 kb on + strand, within ABIE53_000802at 871.354 kb on - strand, within ABIE53_000802at 871.354 kb on - strand, within ABIE53_000802at 871.354 kb on - strand, within ABIE53_000802at 871.392 kb on + strand, within ABIE53_000802at 871.392 kb on + strand, within ABIE53_000802at 871.393 kb on - strand, within ABIE53_000802at 871.393 kb on - strand, within ABIE53_000802at 871.393 kb on - strand, within ABIE53_000802at 871.393 kb on - strand, within ABIE53_000802at 871.455 kb on + strand, within ABIE53_000802at 871.455 kb on + strand, within ABIE53_000802at 871.456 kb on - strand, within ABIE53_000802at 871.483 kb on + strand, within ABIE53_000802at 871.484 kb on - strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.569 kb on + strand, within ABIE53_000802at 871.570 kb on - strand, within ABIE53_000802at 871.708 kb on - strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.726 kb on - strand, within ABIE53_000802at 871.726 kb on - strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.776 kb on + strandat 871.777 kb on - strandat 871.954 kb on + strandat 871.989 kb on + strandat 871.989 kb on + strandat 871.989 kb on + strandat 871.990 kb on - strandat 871.990 kb on - strandat 872.052 kb on + strand, within ABIE53_000803at 872.077 kb on + strand, within ABIE53_000803at 872.130 kb on + strand, within ABIE53_000803at 872.131 kb on - strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.242 kb on - strand, within ABIE53_000803at 872.242 kb on - strand, within ABIE53_000803at 872.349 kb on + strandat 872.350 kb on - strandat 872.350 kb on - strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.398 kb on + strandat 872.398 kb on + strandat 872.399 kb on - strandat 872.399 kb on - strandat 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.544 kb on - strand, within ABIE53_000804at 872.544 kb on - strand, within ABIE53_000804at 872.551 kb on - strand, within ABIE53_000804at 872.645 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.655 kb on - strand, within ABIE53_000804at 872.655 kb on - strand, within ABIE53_000804at 872.679 kb on - strand, within ABIE53_000804at 872.679 kb on - strand, within ABIE53_000804at 873.077 kb on + strand, within ABIE53_000804at 873.078 kb on - strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.306 kb on + strandat 873.306 kb on + strandat 873.306 kb on + strandat 873.307 kb on - strandat 873.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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871,026 + ABIE53_000802 0.23 -0.3
871,026 + ABIE53_000802 0.23 -1.2
871,026 + ABIE53_000802 0.23 +0.8
871,026 + ABIE53_000802 0.23 +0.1
871,026 + ABIE53_000802 0.23 -1.1
871,027 - ABIE53_000802 0.23 +0.4
871,027 - ABIE53_000802 0.23 -0.7
871,027 - ABIE53_000802 0.23 +0.3
871,027 - ABIE53_000802 0.23 -0.4
871,027 - ABIE53_000802 0.23 -0.9
871,102 - ABIE53_000802 0.30 +0.0
871,102 - ABIE53_000802 0.30 +1.8
871,128 + ABIE53_000802 0.32 -0.7
871,128 + ABIE53_000802 0.32 -1.0
871,128 + ABIE53_000802 0.32 -0.2
871,128 + ABIE53_000802 0.32 +1.9
871,128 + ABIE53_000802 0.32 -0.5
871,129 - ABIE53_000802 0.32 +0.9
871,129 - ABIE53_000802 0.32 -0.4
871,129 - ABIE53_000802 0.32 +0.1
871,129 - ABIE53_000802 0.32 -0.2
871,129 - ABIE53_000802 0.32 -1.1
871,157 - ABIE53_000802 0.35 -0.1
871,189 - ABIE53_000802 0.38 -0.6
871,254 + ABIE53_000802 0.43 -0.3
871,255 - ABIE53_000802 0.43 +1.1
871,255 - ABIE53_000802 0.43 -0.6
871,255 - ABIE53_000802 0.43 +0.1
871,255 - ABIE53_000802 0.43 +0.3
871,266 + ABIE53_000802 0.44 +3.3
871,267 - ABIE53_000802 0.45 -0.6
871,293 + ABIE53_000802 0.47 +0.1
871,323 + ABIE53_000802 0.50 +1.1
871,323 + ABIE53_000802 0.50 -0.6
871,353 + ABIE53_000802 0.52 +0.5
871,354 - ABIE53_000802 0.52 -0.9
871,354 - ABIE53_000802 0.52 -0.3
871,354 - ABIE53_000802 0.52 +0.1
871,392 + ABIE53_000802 0.56 -1.1
871,392 + ABIE53_000802 0.56 -0.9
871,393 - ABIE53_000802 0.56 +1.2
871,393 - ABIE53_000802 0.56 -0.0
871,393 - ABIE53_000802 0.56 +0.1
871,393 - ABIE53_000802 0.56 -1.1
871,455 + ABIE53_000802 0.61 +0.0
871,455 + ABIE53_000802 0.61 +0.2
871,456 - ABIE53_000802 0.62 -0.9
871,483 + ABIE53_000802 0.64 -1.5
871,484 - ABIE53_000802 0.64 -0.8
871,488 + ABIE53_000802 0.64 -0.3
871,488 + ABIE53_000802 0.64 -1.0
871,488 + ABIE53_000802 0.64 -0.0
871,488 + ABIE53_000802 0.64 +0.4
871,488 + ABIE53_000802 0.64 +0.9
871,488 + ABIE53_000802 0.64 -1.5
871,489 - ABIE53_000802 0.65 +0.3
871,489 - ABIE53_000802 0.65 +1.4
871,489 - ABIE53_000802 0.65 +0.1
871,489 - ABIE53_000802 0.65 -1.6
871,489 - ABIE53_000802 0.65 -0.4
871,489 - ABIE53_000802 0.65 +1.3
871,489 - ABIE53_000802 0.65 -0.3
871,489 - ABIE53_000802 0.65 +0.7
871,489 - ABIE53_000802 0.65 +0.9
871,489 - ABIE53_000802 0.65 +0.0
871,569 + ABIE53_000802 0.72 -0.9
871,570 - ABIE53_000802 0.72 +1.4
871,708 - ABIE53_000802 0.84 +0.7
871,725 + ABIE53_000802 0.86 -0.1
871,725 + ABIE53_000802 0.86 +1.1
871,725 + ABIE53_000802 0.86 -0.9
871,725 + ABIE53_000802 0.86 +0.1
871,725 + ABIE53_000802 0.86 -0.6
871,725 + ABIE53_000802 0.86 -0.3
871,726 - ABIE53_000802 0.86 +0.1
871,726 - ABIE53_000802 0.86 +1.0
871,752 + ABIE53_000802 0.88 +0.9
871,752 + ABIE53_000802 0.88 -0.2
871,752 + ABIE53_000802 0.88 +0.1
871,753 - ABIE53_000802 0.88 -0.6
871,753 - ABIE53_000802 0.88 +2.0
871,753 - ABIE53_000802 0.88 -1.3
871,768 - ABIE53_000802 0.90 -1.5
871,768 - ABIE53_000802 0.90 +0.8
871,768 - ABIE53_000802 0.90 +0.3
871,776 + +0.7
871,777 - -2.0
871,954 + +1.3
871,989 + +0.2
871,989 + -2.5
871,989 + -1.6
871,990 - +0.7
871,990 - -0.2
872,052 + ABIE53_000803 0.15 -0.1
872,077 + ABIE53_000803 0.21 -0.3
872,130 + ABIE53_000803 0.35 +1.1
872,131 - ABIE53_000803 0.35 -1.8
872,171 + ABIE53_000803 0.45 +0.3
872,171 + ABIE53_000803 0.45 +0.6
872,171 + ABIE53_000803 0.45 +0.1
872,171 + ABIE53_000803 0.45 -0.8
872,171 + ABIE53_000803 0.45 +1.7
872,172 - ABIE53_000803 0.46 +0.4
872,172 - ABIE53_000803 0.46 +3.3
872,172 - ABIE53_000803 0.46 -0.0
872,172 - ABIE53_000803 0.46 +0.6
872,172 - ABIE53_000803 0.46 +0.7
872,172 - ABIE53_000803 0.46 +0.5
872,172 - ABIE53_000803 0.46 -0.0
872,190 + ABIE53_000803 0.50 -1.6
872,190 + ABIE53_000803 0.50 -0.4
872,190 + ABIE53_000803 0.50 +0.1
872,191 - ABIE53_000803 0.51 -0.5
872,191 - ABIE53_000803 0.51 +0.1
872,191 - ABIE53_000803 0.51 +2.3
872,191 - ABIE53_000803 0.51 -0.6
872,242 - ABIE53_000803 0.64 +0.5
872,242 - ABIE53_000803 0.64 +1.0
872,349 + +0.7
872,350 - -0.1
872,350 - +0.3
872,379 + +0.5
872,379 + -0.3
872,379 + +0.2
872,379 + -1.5
872,379 + -0.1
872,379 + -0.5
872,380 - +0.7
872,380 - -0.1
872,380 - +0.1
872,380 - -1.5
872,398 + +0.4
872,398 + -2.1
872,399 - +0.0
872,399 - -1.1
872,543 + ABIE53_000804 0.15 -0.2
872,543 + ABIE53_000804 0.15 -0.5
872,543 + ABIE53_000804 0.15 -0.0
872,543 + ABIE53_000804 0.15 +1.1
872,543 + ABIE53_000804 0.15 -1.1
872,543 + ABIE53_000804 0.15 -0.6
872,544 - ABIE53_000804 0.15 +0.4
872,544 - ABIE53_000804 0.15 +0.5
872,551 - ABIE53_000804 0.16 +1.4
872,645 + ABIE53_000804 0.26 +0.5
872,654 + ABIE53_000804 0.27 -1.6
872,654 + ABIE53_000804 0.27 +0.2
872,654 + ABIE53_000804 0.27 +0.6
872,654 + ABIE53_000804 0.27 +0.2
872,655 - ABIE53_000804 0.27 -0.5
872,655 - ABIE53_000804 0.27 -0.8
872,679 - ABIE53_000804 0.30 -0.6
872,679 - ABIE53_000804 0.30 -0.0
873,077 + ABIE53_000804 0.76 -1.1
873,078 - ABIE53_000804 0.76 +0.1
873,171 + ABIE53_000804 0.87 -0.6
873,171 + ABIE53_000804 0.87 +3.7
873,171 + ABIE53_000804 0.87 -0.6
873,271 - +0.4
873,271 - -1.3
873,271 - -0.2
873,271 - +0.3
873,306 + +0.2
873,306 + -1.0
873,306 + +0.5
873,307 - +1.4
873,307 - -0.9

Or see this region's nucleotide sequence