Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.904.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.903.1 and Xcc-8004.904.1 are separated by 354 nucleotidesXcc-8004.904.1 and Xcc-8004.906.1 overlap by 4 nucleotides Xcc-8004.903.1: Xcc-8004.903.1 - Polygalacturonase (EC 3.2.1.15), at 846,698 to 848,098 Xcc-8004.903.1 Xcc-8004.904.1: Xcc-8004.904.1 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 848,453 to 849,592 Xcc-8004.904.1 Xcc-8004.906.1: Xcc-8004.906.1 - Rare lipoprotein A precursor, at 849,589 to 850,944 Xcc-8004.906.1 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1 2at 847.732 kb on + strand, within Xcc-8004.903.1at 847.732 kb on + strand, within Xcc-8004.903.1at 847.732 kb on + strand, within Xcc-8004.903.1at 847.733 kb on - strand, within Xcc-8004.903.1at 847.733 kb on - strand, within Xcc-8004.903.1at 847.733 kb on - strand, within Xcc-8004.903.1at 847.733 kb on - strand, within Xcc-8004.903.1at 847.736 kb on + strand, within Xcc-8004.903.1at 847.744 kb on + strand, within Xcc-8004.903.1at 847.745 kb on - strand, within Xcc-8004.903.1at 847.745 kb on - strand, within Xcc-8004.903.1at 847.791 kb on - strand, within Xcc-8004.903.1at 847.791 kb on - strand, within Xcc-8004.903.1at 847.901 kb on + strand, within Xcc-8004.903.1at 847.901 kb on + strand, within Xcc-8004.903.1at 847.901 kb on + strand, within Xcc-8004.903.1at 847.902 kb on - strand, within Xcc-8004.903.1at 847.902 kb on - strand, within Xcc-8004.903.1at 847.902 kb on - strand, within Xcc-8004.903.1at 847.902 kb on - strand, within Xcc-8004.903.1at 847.903 kb on + strand, within Xcc-8004.903.1at 848.184 kb on + strandat 848.184 kb on + strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.185 kb on - strandat 848.389 kb on + strandat 848.687 kb on + strand, within Xcc-8004.904.1at 849.497 kb on + strandat 849.579 kb on + strandat 849.579 kb on + strandat 849.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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847,732 + Xcc-8004.903.1 0.74 -0.7
847,732 + Xcc-8004.903.1 0.74 +0.9
847,732 + Xcc-8004.903.1 0.74 -0.6
847,733 - Xcc-8004.903.1 0.74 -0.6
847,733 - Xcc-8004.903.1 0.74 +0.2
847,733 - Xcc-8004.903.1 0.74 -1.1
847,733 - Xcc-8004.903.1 0.74 +0.5
847,736 + Xcc-8004.903.1 0.74 -1.7
847,744 + Xcc-8004.903.1 0.75 +0.7
847,745 - Xcc-8004.903.1 0.75 +0.7
847,745 - Xcc-8004.903.1 0.75 -0.5
847,791 - Xcc-8004.903.1 0.78 +2.5
847,791 - Xcc-8004.903.1 0.78 -1.1
847,901 + Xcc-8004.903.1 0.86 -2.2
847,901 + Xcc-8004.903.1 0.86 +1.2
847,901 + Xcc-8004.903.1 0.86 +1.7
847,902 - Xcc-8004.903.1 0.86 +0.5
847,902 - Xcc-8004.903.1 0.86 +0.9
847,902 - Xcc-8004.903.1 0.86 -1.1
847,902 - Xcc-8004.903.1 0.86 +0.1
847,903 + Xcc-8004.903.1 0.86 -0.1
848,184 + +1.9
848,184 + +1.5
848,185 - -0.4
848,185 - +0.1
848,185 - +1.1
848,185 - +2.0
848,185 - +1.1
848,185 - +0.5
848,185 - +0.1
848,185 - +1.2
848,389 + -0.6
848,687 + Xcc-8004.904.1 0.21 -0.1
849,497 + +0.2
849,579 + -0.2
849,579 + +0.2
849,580 - +0.4

Or see this region's nucleotide sequence