Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.768.1 and Xcc-8004.769.1 are separated by 93 nucleotides Xcc-8004.769.1 and Xcc-8004.770.1 are separated by 6 nucleotides Xcc-8004.770.1 and Xcc-8004.771.1 are separated by 27 nucleotides Xcc-8004.771.1 and Xcc-8004.772.1 are separated by 280 nucleotides
Xcc-8004.768.1: Xcc-8004.768.1 - Glutathione S-transferase, omega (EC 2.5.1.18), at 714,733 to 715,704
Xcc-8004.768.1
Xcc-8004.769.1: Xcc-8004.769.1 - Lactoylglutathione lyase and related lyases, at 715,798 to 716,190
Xcc-8004.769.1
Xcc-8004.770.1: Xcc-8004.770.1 - hypothetical protein, at 716,197 to 716,328
Xcc-8004.770.1
Xcc-8004.771.1: Xcc-8004.771.1 - FIG01209961: hypothetical protein, at 716,356 to 716,817
Xcc-8004.771.1
Xcc-8004.772.1: Xcc-8004.772.1 - protease, putative, at 717,098 to 718,027
Xcc-8004.772.1
Position (kb) 716
717 Strain fitness (log2 ratio) -2
-1
0
1
2 at 715.269 kb on + strand, within Xcc-8004.768.1 at 715.270 kb on - strand, within Xcc-8004.768.1 at 715.313 kb on - strand, within Xcc-8004.768.1 at 715.345 kb on + strand, within Xcc-8004.768.1 at 715.346 kb on - strand, within Xcc-8004.768.1 at 715.414 kb on + strand, within Xcc-8004.768.1 at 715.415 kb on - strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.487 kb on - strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.616 kb on - strand at 715.616 kb on - strand at 715.616 kb on - strand at 715.618 kb on + strand at 715.618 kb on + strand at 715.619 kb on - strand at 715.740 kb on + strand at 715.740 kb on + strand at 715.762 kb on + strand at 715.782 kb on + strand at 715.783 kb on - strand at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 716.085 kb on + strand, within Xcc-8004.769.1 at 716.140 kb on + strand, within Xcc-8004.769.1 at 716.141 kb on - strand, within Xcc-8004.769.1 at 716.188 kb on + strand at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.256 kb on - strand, within Xcc-8004.770.1 at 716.323 kb on - strand at 716.323 kb on - strand at 716.480 kb on + strand, within Xcc-8004.771.1 at 716.833 kb on + strand at 716.880 kb on + strand at 716.881 kb on - strand at 716.897 kb on + strand at 716.897 kb on + strand at 716.897 kb on + strand at 716.898 kb on - strand at 716.898 kb on - strand at 716.949 kb on + strand at 716.949 kb on + strand at 716.950 kb on - strand at 716.950 kb on - strand at 716.995 kb on - strand at 716.995 kb on - strand at 717.054 kb on + strand at 717.055 kb on - strand at 717.055 kb on - strand at 717.247 kb on + strand, within Xcc-8004.772.1 at 717.248 kb on - strand, within Xcc-8004.772.1 at 717.300 kb on + strand, within Xcc-8004.772.1 at 717.326 kb on - strand, within Xcc-8004.772.1 at 717.326 kb on - strand, within Xcc-8004.772.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 715,269 + Xcc-8004.768.1 0.55 -2.4 715,270 - Xcc-8004.768.1 0.55 -0.3 715,313 - Xcc-8004.768.1 0.60 -0.5 715,345 + Xcc-8004.768.1 0.63 +0.5 715,346 - Xcc-8004.768.1 0.63 -0.3 715,414 + Xcc-8004.768.1 0.70 +1.0 715,415 - Xcc-8004.768.1 0.70 +0.2 715,486 + Xcc-8004.768.1 0.77 -1.1 715,486 + Xcc-8004.768.1 0.77 +0.9 715,487 - Xcc-8004.768.1 0.78 +0.7 715,561 + Xcc-8004.768.1 0.85 -0.7 715,561 + Xcc-8004.768.1 0.85 -1.0 715,616 - +1.1 715,616 - +0.3 715,616 - -0.3 715,618 + -1.7 715,618 + +0.2 715,619 - -1.4 715,740 + -1.4 715,740 + -0.2 715,762 + -0.0 715,782 + -0.3 715,783 - +0.5 715,920 + Xcc-8004.769.1 0.31 +0.6 715,920 + Xcc-8004.769.1 0.31 -1.3 715,920 + Xcc-8004.769.1 0.31 +2.1 715,920 + Xcc-8004.769.1 0.31 -1.1 715,921 - Xcc-8004.769.1 0.31 -0.7 715,921 - Xcc-8004.769.1 0.31 +0.9 716,085 + Xcc-8004.769.1 0.73 -2.6 716,140 + Xcc-8004.769.1 0.87 +0.1 716,141 - Xcc-8004.769.1 0.87 -1.9 716,188 + +0.2 716,252 - Xcc-8004.770.1 0.42 -0.5 716,252 - Xcc-8004.770.1 0.42 -0.8 716,256 - Xcc-8004.770.1 0.45 -1.4 716,323 - +0.9 716,323 - -0.3 716,480 + Xcc-8004.771.1 0.27 +0.6 716,833 + -0.7 716,880 + +0.1 716,881 - -0.0 716,897 + -1.7 716,897 + +0.4 716,897 + -0.4 716,898 - -0.1 716,898 - +0.6 716,949 + +0.4 716,949 + -2.0 716,950 - +0.3 716,950 - -0.6 716,995 - -1.4 716,995 - -0.2 717,054 + +0.9 717,055 - +0.9 717,055 - -0.8 717,247 + Xcc-8004.772.1 0.16 +0.6 717,248 - Xcc-8004.772.1 0.16 +2.3 717,300 + Xcc-8004.772.1 0.22 +0.5 717,326 - Xcc-8004.772.1 0.25 +2.3 717,326 - Xcc-8004.772.1 0.25 -1.1
Or see this region's nucleotide sequence