Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.605.1 and Xcc-8004.606.1 overlap by 4 nucleotides Xcc-8004.606.1 and Xcc-8004.607.1 are separated by 276 nucleotides Xcc-8004.607.1 and Xcc-8004.608.1 are separated by 482 nucleotides
Xcc-8004.605.1: Xcc-8004.605.1 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 557,121 to 557,792
Xcc-8004.605.1
Xcc-8004.606.1: Xcc-8004.606.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 557,789 to 558,280
Xcc-8004.606.1
Xcc-8004.607.1: Xcc-8004.607.1 - hypothetical protein, at 558,557 to 559,582
Xcc-8004.607.1
Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540
Xcc-8004.608.1
Position (kb) 558
559
560 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 557.874 kb on - strand, within Xcc-8004.606.1 at 557.874 kb on - strand, within Xcc-8004.606.1 at 557.999 kb on + strand, within Xcc-8004.606.1 at 557.999 kb on + strand, within Xcc-8004.606.1 at 557.999 kb on + strand, within Xcc-8004.606.1 at 558.000 kb on - strand, within Xcc-8004.606.1 at 558.000 kb on - strand, within Xcc-8004.606.1 at 558.000 kb on - strand, within Xcc-8004.606.1 at 558.000 kb on - strand, within Xcc-8004.606.1 at 558.011 kb on + strand, within Xcc-8004.606.1 at 558.011 kb on + strand, within Xcc-8004.606.1 at 558.011 kb on + strand, within Xcc-8004.606.1 at 558.011 kb on + strand, within Xcc-8004.606.1 at 558.012 kb on - strand, within Xcc-8004.606.1 at 558.012 kb on - strand, within Xcc-8004.606.1 at 558.012 kb on - strand, within Xcc-8004.606.1 at 558.041 kb on + strand, within Xcc-8004.606.1 at 558.041 kb on + strand, within Xcc-8004.606.1 at 558.041 kb on + strand, within Xcc-8004.606.1 at 558.042 kb on - strand, within Xcc-8004.606.1 at 558.191 kb on + strand, within Xcc-8004.606.1 at 558.191 kb on + strand, within Xcc-8004.606.1 at 558.192 kb on - strand, within Xcc-8004.606.1 at 558.192 kb on - strand, within Xcc-8004.606.1 at 558.231 kb on + strand at 558.232 kb on - strand at 558.232 kb on - strand at 558.232 kb on - strand at 558.233 kb on + strand at 558.234 kb on - strand at 558.274 kb on + strand at 558.275 kb on - strand at 558.320 kb on + strand at 558.320 kb on + strand at 558.321 kb on - strand at 558.321 kb on - strand at 558.450 kb on + strand at 558.451 kb on - strand at 558.525 kb on + strand at 558.525 kb on + strand at 558.526 kb on - strand at 558.535 kb on + strand at 558.535 kb on + strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.585 kb on - strand at 558.585 kb on - strand at 558.585 kb on - strand at 558.613 kb on + strand at 558.614 kb on - strand at 558.614 kb on - strand at 558.794 kb on + strand, within Xcc-8004.607.1 at 559.154 kb on + strand, within Xcc-8004.607.1 at 559.154 kb on + strand, within Xcc-8004.607.1 at 559.154 kb on + strand, within Xcc-8004.607.1 at 559.154 kb on + strand, within Xcc-8004.607.1 at 559.154 kb on + strand, within Xcc-8004.607.1 at 559.155 kb on - strand, within Xcc-8004.607.1 at 559.155 kb on - strand, within Xcc-8004.607.1 at 559.677 kb on + strand at 559.678 kb on - strand at 559.678 kb on - strand at 559.747 kb on + strand at 559.748 kb on - strand at 559.855 kb on - strand at 559.928 kb on - strand at 559.945 kb on - strand at 559.945 kb on - strand at 559.950 kb on - strand at 560.168 kb on - strand at 560.197 kb on + strand at 560.197 kb on + strand at 560.197 kb on + strand at 560.198 kb on - strand at 560.198 kb on - strand at 560.198 kb on - strand at 560.198 kb on - strand at 560.198 kb on - strand at 560.198 kb on - strand at 560.240 kb on - strand, within Xcc-8004.608.1 at 560.273 kb on - strand, within Xcc-8004.608.1 at 560.273 kb on - strand, within Xcc-8004.608.1 at 560.455 kb on + strand, within Xcc-8004.608.1 at 560.455 kb on + strand, within Xcc-8004.608.1 at 560.455 kb on + strand, within Xcc-8004.608.1 at 560.456 kb on - strand, within Xcc-8004.608.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 557,874 - Xcc-8004.606.1 0.17 +0.2 557,874 - Xcc-8004.606.1 0.17 +0.4 557,999 + Xcc-8004.606.1 0.43 -0.8 557,999 + Xcc-8004.606.1 0.43 +0.1 557,999 + Xcc-8004.606.1 0.43 -0.7 558,000 - Xcc-8004.606.1 0.43 -0.9 558,000 - Xcc-8004.606.1 0.43 -1.3 558,000 - Xcc-8004.606.1 0.43 +0.2 558,000 - Xcc-8004.606.1 0.43 -2.1 558,011 + Xcc-8004.606.1 0.45 -0.4 558,011 + Xcc-8004.606.1 0.45 -0.4 558,011 + Xcc-8004.606.1 0.45 +0.5 558,011 + Xcc-8004.606.1 0.45 +1.2 558,012 - Xcc-8004.606.1 0.45 +1.0 558,012 - Xcc-8004.606.1 0.45 +1.2 558,012 - Xcc-8004.606.1 0.45 +0.1 558,041 + Xcc-8004.606.1 0.51 +0.5 558,041 + Xcc-8004.606.1 0.51 +1.9 558,041 + Xcc-8004.606.1 0.51 +1.9 558,042 - Xcc-8004.606.1 0.51 +0.6 558,191 + Xcc-8004.606.1 0.82 +0.2 558,191 + Xcc-8004.606.1 0.82 +0.1 558,192 - Xcc-8004.606.1 0.82 +2.0 558,192 - Xcc-8004.606.1 0.82 +1.7 558,231 + +0.0 558,232 - +1.9 558,232 - -1.0 558,232 - -0.5 558,233 + +1.6 558,234 - -0.4 558,274 + +3.1 558,275 - +1.1 558,320 + -0.9 558,320 + +0.2 558,321 - -2.3 558,321 - -3.4 558,450 + +0.1 558,451 - +2.0 558,525 + +0.3 558,525 + -0.7 558,526 - -1.1 558,535 + +0.3 558,535 + -1.0 558,536 - -1.5 558,536 - -1.0 558,536 - +0.7 558,536 - -1.1 558,585 - +1.1 558,585 - -0.6 558,585 - -1.6 558,613 + +0.5 558,614 - -0.1 558,614 - -0.7 558,794 + Xcc-8004.607.1 0.23 -1.0 559,154 + Xcc-8004.607.1 0.58 -0.4 559,154 + Xcc-8004.607.1 0.58 -0.3 559,154 + Xcc-8004.607.1 0.58 +0.8 559,154 + Xcc-8004.607.1 0.58 -0.3 559,154 + Xcc-8004.607.1 0.58 -0.1 559,155 - Xcc-8004.607.1 0.58 -0.2 559,155 - Xcc-8004.607.1 0.58 -0.4 559,677 + +1.2 559,678 - +0.1 559,678 - -0.8 559,747 + -0.4 559,748 - -0.7 559,855 - -0.8 559,928 - +0.6 559,945 - +0.1 559,945 - -2.4 559,950 - -1.2 560,168 - -2.1 560,197 + -4.9 560,197 + -2.1 560,197 + -3.9 560,198 - -2.4 560,198 - -3.8 560,198 - -0.7 560,198 - -2.1 560,198 - -1.7 560,198 - -1.9 560,240 - Xcc-8004.608.1 0.12 -2.7 560,273 - Xcc-8004.608.1 0.14 -2.6 560,273 - Xcc-8004.608.1 0.14 -1.9 560,455 + Xcc-8004.608.1 0.26 -1.2 560,455 + Xcc-8004.608.1 0.26 -3.5 560,455 + Xcc-8004.608.1 0.26 -3.4 560,456 - Xcc-8004.608.1 0.26 -1.4
Or see this region's nucleotide sequence