Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4905.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4904.1 and Xcc-8004.4905.1 are separated by 57 nucleotidesXcc-8004.4905.1 and Xcc-8004.4906.1 are separated by 269 nucleotides Xcc-8004.4904.1: Xcc-8004.4904.1 - O-antigen acetylase, at 4,662,117 to 4,663,241 Xcc-8004.4904.1 Xcc-8004.4905.1: Xcc-8004.4905.1 - FIG01211209: hypothetical protein, at 4,663,299 to 4,663,649 Xcc-8004.4905.1 Xcc-8004.4906.1: Xcc-8004.4906.1 - Glucosyltransferase, at 4,663,919 to 4,665,253 Xcc-8004.4906.1 Position (kb) 4663 4664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4662.325 kb on + strand, within Xcc-8004.4904.1at 4662.325 kb on + strand, within Xcc-8004.4904.1at 4662.325 kb on + strand, within Xcc-8004.4904.1at 4662.325 kb on + strand, within Xcc-8004.4904.1at 4662.325 kb on + strand, within Xcc-8004.4904.1at 4662.326 kb on - strand, within Xcc-8004.4904.1at 4662.326 kb on - strand, within Xcc-8004.4904.1at 4662.326 kb on - strand, within Xcc-8004.4904.1at 4662.326 kb on - strand, within Xcc-8004.4904.1at 4662.334 kb on + strand, within Xcc-8004.4904.1at 4662.335 kb on - strand, within Xcc-8004.4904.1at 4662.335 kb on - strand, within Xcc-8004.4904.1at 4662.367 kb on - strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.640 kb on + strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.641 kb on - strand, within Xcc-8004.4904.1at 4662.654 kb on - strand, within Xcc-8004.4904.1at 4662.654 kb on - strand, within Xcc-8004.4904.1at 4662.824 kb on - strand, within Xcc-8004.4904.1at 4662.902 kb on + strand, within Xcc-8004.4904.1at 4662.967 kb on + strand, within Xcc-8004.4904.1at 4662.967 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.021 kb on + strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.022 kb on - strand, within Xcc-8004.4904.1at 4663.315 kb on + strandat 4663.315 kb on + strandat 4663.315 kb on + strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.316 kb on - strandat 4663.344 kb on - strand, within Xcc-8004.4905.1at 4663.618 kb on - strandat 4663.618 kb on - strandat 4663.701 kb on + strandat 4663.701 kb on + strandat 4663.701 kb on + strandat 4663.721 kb on + strandat 4663.721 kb on + strandat 4663.745 kb on + strandat 4663.746 kb on - strandat 4663.746 kb on - strandat 4663.805 kb on + strandat 4663.806 kb on - strandat 4663.807 kb on + strandat 4663.807 kb on + strandat 4663.808 kb on - strandat 4663.808 kb on - strandat 4664.125 kb on + strand, within Xcc-8004.4906.1at 4664.449 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.475 kb on + strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.476 kb on - strand, within Xcc-8004.4906.1at 4664.613 kb on + strand, within Xcc-8004.4906.1at 4664.614 kb on - strand, within Xcc-8004.4906.1at 4664.619 kb on + strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.620 kb on - strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.621 kb on + strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1at 4664.622 kb on - strand, within Xcc-8004.4906.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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4,662,325 + Xcc-8004.4904.1 0.18 -1.2
4,662,325 + Xcc-8004.4904.1 0.18 -1.2
4,662,325 + Xcc-8004.4904.1 0.18 -1.3
4,662,325 + Xcc-8004.4904.1 0.18 -0.5
4,662,325 + Xcc-8004.4904.1 0.18 -0.7
4,662,326 - Xcc-8004.4904.1 0.19 +2.2
4,662,326 - Xcc-8004.4904.1 0.19 -0.9
4,662,326 - Xcc-8004.4904.1 0.19 -4.0
4,662,326 - Xcc-8004.4904.1 0.19 -0.1
4,662,334 + Xcc-8004.4904.1 0.19 +1.4
4,662,335 - Xcc-8004.4904.1 0.19 +1.7
4,662,335 - Xcc-8004.4904.1 0.19 +2.6
4,662,367 - Xcc-8004.4904.1 0.22 +2.1
4,662,640 + Xcc-8004.4904.1 0.46 -2.9
4,662,640 + Xcc-8004.4904.1 0.46 -2.2
4,662,640 + Xcc-8004.4904.1 0.46 +0.1
4,662,640 + Xcc-8004.4904.1 0.46 -1.9
4,662,640 + Xcc-8004.4904.1 0.46 +0.9
4,662,640 + Xcc-8004.4904.1 0.46 +0.3
4,662,640 + Xcc-8004.4904.1 0.46 -0.7
4,662,641 - Xcc-8004.4904.1 0.47 -0.3
4,662,641 - Xcc-8004.4904.1 0.47 +1.5
4,662,641 - Xcc-8004.4904.1 0.47 -1.3
4,662,641 - Xcc-8004.4904.1 0.47 -1.9
4,662,641 - Xcc-8004.4904.1 0.47 +0.9
4,662,641 - Xcc-8004.4904.1 0.47 -0.2
4,662,641 - Xcc-8004.4904.1 0.47 -0.3
4,662,641 - Xcc-8004.4904.1 0.47 -0.3
4,662,641 - Xcc-8004.4904.1 0.47 +0.6
4,662,641 - Xcc-8004.4904.1 0.47 +0.1
4,662,641 - Xcc-8004.4904.1 0.47 +0.5
4,662,641 - Xcc-8004.4904.1 0.47 +3.1
4,662,641 - Xcc-8004.4904.1 0.47 -0.8
4,662,641 - Xcc-8004.4904.1 0.47 -0.9
4,662,641 - Xcc-8004.4904.1 0.47 -0.5
4,662,641 - Xcc-8004.4904.1 0.47 -0.1
4,662,641 - Xcc-8004.4904.1 0.47 -0.3
4,662,654 - Xcc-8004.4904.1 0.48 +1.0
4,662,654 - Xcc-8004.4904.1 0.48 +0.5
4,662,824 - Xcc-8004.4904.1 0.63 +0.9
4,662,902 + Xcc-8004.4904.1 0.70 +1.0
4,662,967 + Xcc-8004.4904.1 0.76 -0.4
4,662,967 + Xcc-8004.4904.1 0.76 -3.4
4,663,021 + Xcc-8004.4904.1 0.80 -1.1
4,663,021 + Xcc-8004.4904.1 0.80 -1.0
4,663,021 + Xcc-8004.4904.1 0.80 +0.7
4,663,022 - Xcc-8004.4904.1 0.80 +1.4
4,663,022 - Xcc-8004.4904.1 0.80 +1.3
4,663,022 - Xcc-8004.4904.1 0.80 -0.2
4,663,315 + -1.4
4,663,315 + +0.0
4,663,315 + -2.9
4,663,316 - +0.1
4,663,316 - +1.2
4,663,316 - +0.2
4,663,316 - -0.8
4,663,316 - +1.3
4,663,344 - Xcc-8004.4905.1 0.13 +1.5
4,663,618 - -1.7
4,663,618 - +0.1
4,663,701 + -1.2
4,663,701 + -0.1
4,663,701 + +2.8
4,663,721 + +0.2
4,663,721 + -1.4
4,663,745 + +1.0
4,663,746 - -1.5
4,663,746 - +0.4
4,663,805 + +0.1
4,663,806 - +0.6
4,663,807 + -1.2
4,663,807 + -0.1
4,663,808 - +1.2
4,663,808 - -1.1
4,664,125 + Xcc-8004.4906.1 0.15 -0.7
4,664,449 + Xcc-8004.4906.1 0.40 -0.1
4,664,475 + Xcc-8004.4906.1 0.42 -0.1
4,664,475 + Xcc-8004.4906.1 0.42 +0.8
4,664,475 + Xcc-8004.4906.1 0.42 -0.8
4,664,476 - Xcc-8004.4906.1 0.42 +0.5
4,664,476 - Xcc-8004.4906.1 0.42 +2.0
4,664,476 - Xcc-8004.4906.1 0.42 -0.1
4,664,476 - Xcc-8004.4906.1 0.42 -1.1
4,664,613 + Xcc-8004.4906.1 0.52 -2.3
4,664,614 - Xcc-8004.4906.1 0.52 +2.4
4,664,619 + Xcc-8004.4906.1 0.52 +0.1
4,664,620 - Xcc-8004.4906.1 0.53 +1.0
4,664,620 - Xcc-8004.4906.1 0.53 +0.1
4,664,620 - Xcc-8004.4906.1 0.53 +0.0
4,664,620 - Xcc-8004.4906.1 0.53 -0.1
4,664,620 - Xcc-8004.4906.1 0.53 +0.5
4,664,621 + Xcc-8004.4906.1 0.53 -0.6
4,664,621 + Xcc-8004.4906.1 0.53 -1.1
4,664,621 + Xcc-8004.4906.1 0.53 -0.5
4,664,621 + Xcc-8004.4906.1 0.53 -0.9
4,664,621 + Xcc-8004.4906.1 0.53 +0.1
4,664,621 + Xcc-8004.4906.1 0.53 -0.7
4,664,621 + Xcc-8004.4906.1 0.53 +0.4
4,664,621 + Xcc-8004.4906.1 0.53 +1.1
4,664,621 + Xcc-8004.4906.1 0.53 +1.0
4,664,621 + Xcc-8004.4906.1 0.53 -0.3
4,664,621 + Xcc-8004.4906.1 0.53 -1.2
4,664,621 + Xcc-8004.4906.1 0.53 -1.2
4,664,621 + Xcc-8004.4906.1 0.53 +0.3
4,664,621 + Xcc-8004.4906.1 0.53 -0.4
4,664,622 - Xcc-8004.4906.1 0.53 -0.1
4,664,622 - Xcc-8004.4906.1 0.53 -0.1
4,664,622 - Xcc-8004.4906.1 0.53 +0.5
4,664,622 - Xcc-8004.4906.1 0.53 +1.1
4,664,622 - Xcc-8004.4906.1 0.53 +0.9
4,664,622 - Xcc-8004.4906.1 0.53 -0.6
4,664,622 - Xcc-8004.4906.1 0.53 +1.0
4,664,622 - Xcc-8004.4906.1 0.53 -2.6
4,664,622 - Xcc-8004.4906.1 0.53 +0.7
4,664,622 - Xcc-8004.4906.1 0.53 -0.1
4,664,622 - Xcc-8004.4906.1 0.53 -0.8

Or see this region's nucleotide sequence