Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4892.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4890.1 and Xcc-8004.4891.1 are separated by 79 nucleotidesXcc-8004.4891.1 and Xcc-8004.4892.1 overlap by 1 nucleotidesXcc-8004.4892.1 and Xcc-8004.4893.1 are separated by 113 nucleotidesXcc-8004.4893.1 and Xcc-8004.4894.1 are separated by 313 nucleotides Xcc-8004.4890.1: Xcc-8004.4890.1 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 4,649,795 to 4,650,760 Xcc-8004.4890.1 Xcc-8004.4891.1: Xcc-8004.4891.1 - Dolichol-phosphate mannosyltransferase, at 4,650,840 to 4,651,562 Xcc-8004.4891.1 Xcc-8004.4892.1: Xcc-8004.4892.1 - FIG01210656: hypothetical protein, at 4,651,562 to 4,651,903 Xcc-8004.4892.1 Xcc-8004.4893.1: Xcc-8004.4893.1 - FIG01209701: hypothetical protein, at 4,652,017 to 4,652,568 Xcc-8004.4893.1 Xcc-8004.4894.1: Xcc-8004.4894.1 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 4,652,882 to 4,655,224 Xcc-8004.4894.1 Position (kb) 4651 4652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.740 kb on + strandat 4650.741 kb on - strandat 4650.741 kb on - strandat 4650.741 kb on - strandat 4650.741 kb on - strandat 4650.741 kb on - strandat 4650.741 kb on - strandat 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.957 kb on + strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4650.958 kb on - strand, within Xcc-8004.4891.1at 4651.356 kb on + strand, within Xcc-8004.4891.1at 4651.356 kb on + strand, within Xcc-8004.4891.1at 4651.356 kb on + strand, within Xcc-8004.4891.1at 4651.356 kb on + strand, within Xcc-8004.4891.1at 4651.357 kb on - strand, within Xcc-8004.4891.1at 4651.357 kb on - strand, within Xcc-8004.4891.1at 4651.357 kb on - strand, within Xcc-8004.4891.1at 4651.377 kb on + strand, within Xcc-8004.4891.1at 4651.378 kb on - strand, within Xcc-8004.4891.1at 4651.378 kb on - strand, within Xcc-8004.4891.1at 4651.378 kb on - strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.464 kb on + strand, within Xcc-8004.4891.1at 4651.465 kb on - strand, within Xcc-8004.4891.1at 4651.465 kb on - strand, within Xcc-8004.4891.1at 4651.465 kb on - strand, within Xcc-8004.4891.1at 4651.465 kb on - strand, within Xcc-8004.4891.1at 4651.465 kb on - strand, within Xcc-8004.4891.1at 4651.532 kb on + strandat 4651.533 kb on - strandat 4651.591 kb on + strandat 4651.591 kb on + strandat 4651.592 kb on - strandat 4651.592 kb on - strandat 4651.601 kb on + strand, within Xcc-8004.4892.1at 4651.601 kb on + strand, within Xcc-8004.4892.1at 4651.601 kb on + strand, within Xcc-8004.4892.1at 4651.602 kb on - strand, within Xcc-8004.4892.1at 4651.602 kb on - strand, within Xcc-8004.4892.1at 4651.643 kb on + strand, within Xcc-8004.4892.1at 4651.643 kb on + strand, within Xcc-8004.4892.1at 4651.644 kb on - strand, within Xcc-8004.4892.1at 4651.644 kb on - strand, within Xcc-8004.4892.1at 4651.644 kb on - strand, within Xcc-8004.4892.1at 4651.677 kb on + strand, within Xcc-8004.4892.1at 4651.678 kb on - strand, within Xcc-8004.4892.1at 4651.678 kb on - strand, within Xcc-8004.4892.1at 4651.736 kb on + strand, within Xcc-8004.4892.1at 4651.736 kb on + strand, within Xcc-8004.4892.1at 4651.736 kb on + strand, within Xcc-8004.4892.1at 4651.736 kb on + strand, within Xcc-8004.4892.1at 4651.736 kb on + strand, within Xcc-8004.4892.1at 4651.737 kb on - strand, within Xcc-8004.4892.1at 4651.737 kb on - strand, within Xcc-8004.4892.1at 4651.737 kb on - strand, within Xcc-8004.4892.1at 4651.737 kb on - strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.772 kb on + strand, within Xcc-8004.4892.1at 4651.773 kb on - strand, within Xcc-8004.4892.1at 4651.773 kb on - strand, within Xcc-8004.4892.1at 4651.773 kb on - strand, within Xcc-8004.4892.1at 4651.773 kb on - strand, within Xcc-8004.4892.1at 4651.773 kb on - strand, within Xcc-8004.4892.1at 4651.835 kb on - strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.844 kb on + strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.845 kb on - strand, within Xcc-8004.4892.1at 4651.853 kb on + strand, within Xcc-8004.4892.1at 4651.854 kb on - strand, within Xcc-8004.4892.1at 4651.854 kb on - strand, within Xcc-8004.4892.1at 4651.905 kb on + strandat 4651.905 kb on + strandat 4651.905 kb on + strandat 4651.905 kb on + strandat 4651.905 kb on + strandat 4651.906 kb on - strandat 4651.906 kb on - strandat 4651.994 kb on - strandat 4652.081 kb on + strand, within Xcc-8004.4893.1at 4652.081 kb on + strand, within Xcc-8004.4893.1at 4652.082 kb on - strand, within Xcc-8004.4893.1at 4652.082 kb on - strand, within Xcc-8004.4893.1at 4652.082 kb on - strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.117 kb on + strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.118 kb on - strand, within Xcc-8004.4893.1at 4652.141 kb on + strand, within Xcc-8004.4893.1at 4652.141 kb on + strand, within Xcc-8004.4893.1at 4652.142 kb on - strand, within Xcc-8004.4893.1at 4652.197 kb on - strand, within Xcc-8004.4893.1at 4652.479 kb on + strand, within Xcc-8004.4893.1at 4652.479 kb on + strand, within Xcc-8004.4893.1at 4652.749 kb on + strandat 4652.749 kb on + strandat 4652.749 kb on + strandat 4652.749 kb on + strandat 4652.749 kb on + strandat 4652.750 kb on - strandat 4652.750 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
remove
4,650,740 + -1.8
4,650,740 + +1.7
4,650,740 + -2.3
4,650,740 + -1.0
4,650,740 + -0.0
4,650,740 + -2.3
4,650,740 + +0.4
4,650,740 + -2.1
4,650,740 + +0.1
4,650,741 - -0.8
4,650,741 - -1.1
4,650,741 - -0.7
4,650,741 - +1.1
4,650,741 - -0.5
4,650,741 - -0.2
4,650,957 + Xcc-8004.4891.1 0.16 -2.6
4,650,957 + Xcc-8004.4891.1 0.16 +0.3
4,650,957 + Xcc-8004.4891.1 0.16 -1.4
4,650,957 + Xcc-8004.4891.1 0.16 +0.2
4,650,957 + Xcc-8004.4891.1 0.16 -1.0
4,650,957 + Xcc-8004.4891.1 0.16 -1.1
4,650,957 + Xcc-8004.4891.1 0.16 -3.3
4,650,957 + Xcc-8004.4891.1 0.16 -1.5
4,650,958 - Xcc-8004.4891.1 0.16 -2.6
4,650,958 - Xcc-8004.4891.1 0.16 -2.7
4,650,958 - Xcc-8004.4891.1 0.16 +0.9
4,650,958 - Xcc-8004.4891.1 0.16 -1.9
4,650,958 - Xcc-8004.4891.1 0.16 -3.4
4,650,958 - Xcc-8004.4891.1 0.16 -3.0
4,650,958 - Xcc-8004.4891.1 0.16 -1.1
4,651,356 + Xcc-8004.4891.1 0.71 -2.8
4,651,356 + Xcc-8004.4891.1 0.71 -3.3
4,651,356 + Xcc-8004.4891.1 0.71 -0.6
4,651,356 + Xcc-8004.4891.1 0.71 -1.1
4,651,357 - Xcc-8004.4891.1 0.72 -1.9
4,651,357 - Xcc-8004.4891.1 0.72 -1.1
4,651,357 - Xcc-8004.4891.1 0.72 +2.3
4,651,377 + Xcc-8004.4891.1 0.74 -0.7
4,651,378 - Xcc-8004.4891.1 0.74 -3.2
4,651,378 - Xcc-8004.4891.1 0.74 -1.5
4,651,378 - Xcc-8004.4891.1 0.74 +0.9
4,651,464 + Xcc-8004.4891.1 0.86 -0.4
4,651,464 + Xcc-8004.4891.1 0.86 -1.0
4,651,464 + Xcc-8004.4891.1 0.86 -1.7
4,651,464 + Xcc-8004.4891.1 0.86 +0.9
4,651,464 + Xcc-8004.4891.1 0.86 -1.9
4,651,464 + Xcc-8004.4891.1 0.86 -0.7
4,651,464 + Xcc-8004.4891.1 0.86 -3.3
4,651,465 - Xcc-8004.4891.1 0.86 -3.1
4,651,465 - Xcc-8004.4891.1 0.86 +0.3
4,651,465 - Xcc-8004.4891.1 0.86 +0.1
4,651,465 - Xcc-8004.4891.1 0.86 +0.0
4,651,465 - Xcc-8004.4891.1 0.86 -2.9
4,651,532 + -0.8
4,651,533 - -0.8
4,651,591 + -2.1
4,651,591 + -0.3
4,651,592 - -2.3
4,651,592 - -1.6
4,651,601 + Xcc-8004.4892.1 0.11 -2.3
4,651,601 + Xcc-8004.4892.1 0.11 -1.3
4,651,601 + Xcc-8004.4892.1 0.11 -0.9
4,651,602 - Xcc-8004.4892.1 0.12 -2.4
4,651,602 - Xcc-8004.4892.1 0.12 -2.3
4,651,643 + Xcc-8004.4892.1 0.24 -0.4
4,651,643 + Xcc-8004.4892.1 0.24 -2.4
4,651,644 - Xcc-8004.4892.1 0.24 -2.7
4,651,644 - Xcc-8004.4892.1 0.24 -1.8
4,651,644 - Xcc-8004.4892.1 0.24 -1.9
4,651,677 + Xcc-8004.4892.1 0.34 +0.3
4,651,678 - Xcc-8004.4892.1 0.34 -2.1
4,651,678 - Xcc-8004.4892.1 0.34 +2.1
4,651,736 + Xcc-8004.4892.1 0.51 -0.6
4,651,736 + Xcc-8004.4892.1 0.51 -0.9
4,651,736 + Xcc-8004.4892.1 0.51 +0.9
4,651,736 + Xcc-8004.4892.1 0.51 -1.0
4,651,736 + Xcc-8004.4892.1 0.51 -3.6
4,651,737 - Xcc-8004.4892.1 0.51 -3.2
4,651,737 - Xcc-8004.4892.1 0.51 -1.0
4,651,737 - Xcc-8004.4892.1 0.51 -1.9
4,651,737 - Xcc-8004.4892.1 0.51 -3.9
4,651,772 + Xcc-8004.4892.1 0.61 -1.8
4,651,772 + Xcc-8004.4892.1 0.61 -2.9
4,651,772 + Xcc-8004.4892.1 0.61 -0.4
4,651,772 + Xcc-8004.4892.1 0.61 -1.4
4,651,772 + Xcc-8004.4892.1 0.61 -1.5
4,651,772 + Xcc-8004.4892.1 0.61 -1.3
4,651,772 + Xcc-8004.4892.1 0.61 -1.1
4,651,773 - Xcc-8004.4892.1 0.62 -1.8
4,651,773 - Xcc-8004.4892.1 0.62 -2.9
4,651,773 - Xcc-8004.4892.1 0.62 +0.6
4,651,773 - Xcc-8004.4892.1 0.62 -1.5
4,651,773 - Xcc-8004.4892.1 0.62 +1.2
4,651,835 - Xcc-8004.4892.1 0.80 -1.2
4,651,844 + Xcc-8004.4892.1 0.82 -2.7
4,651,844 + Xcc-8004.4892.1 0.82 +0.4
4,651,844 + Xcc-8004.4892.1 0.82 -1.0
4,651,844 + Xcc-8004.4892.1 0.82 -2.4
4,651,844 + Xcc-8004.4892.1 0.82 +0.6
4,651,844 + Xcc-8004.4892.1 0.82 -2.4
4,651,844 + Xcc-8004.4892.1 0.82 -2.7
4,651,844 + Xcc-8004.4892.1 0.82 -0.7
4,651,845 - Xcc-8004.4892.1 0.83 -1.2
4,651,845 - Xcc-8004.4892.1 0.83 -2.4
4,651,845 - Xcc-8004.4892.1 0.83 -0.4
4,651,845 - Xcc-8004.4892.1 0.83 -0.2
4,651,845 - Xcc-8004.4892.1 0.83 -1.8
4,651,845 - Xcc-8004.4892.1 0.83 -1.4
4,651,845 - Xcc-8004.4892.1 0.83 -1.5
4,651,853 + Xcc-8004.4892.1 0.85 -3.1
4,651,854 - Xcc-8004.4892.1 0.85 -2.6
4,651,854 - Xcc-8004.4892.1 0.85 +0.0
4,651,905 + +0.8
4,651,905 + +0.4
4,651,905 + +1.6
4,651,905 + +0.5
4,651,905 + +1.3
4,651,906 - -2.2
4,651,906 - -0.7
4,651,994 - -1.7
4,652,081 + Xcc-8004.4893.1 0.12 -1.7
4,652,081 + Xcc-8004.4893.1 0.12 -1.7
4,652,082 - Xcc-8004.4893.1 0.12 -0.1
4,652,082 - Xcc-8004.4893.1 0.12 -0.2
4,652,082 - Xcc-8004.4893.1 0.12 +0.0
4,652,117 + Xcc-8004.4893.1 0.18 +0.6
4,652,117 + Xcc-8004.4893.1 0.18 +0.0
4,652,117 + Xcc-8004.4893.1 0.18 +2.5
4,652,117 + Xcc-8004.4893.1 0.18 +0.0
4,652,117 + Xcc-8004.4893.1 0.18 +0.8
4,652,117 + Xcc-8004.4893.1 0.18 -0.7
4,652,117 + Xcc-8004.4893.1 0.18 -1.1
4,652,117 + Xcc-8004.4893.1 0.18 -2.0
4,652,117 + Xcc-8004.4893.1 0.18 +0.1
4,652,117 + Xcc-8004.4893.1 0.18 -3.0
4,652,117 + Xcc-8004.4893.1 0.18 -0.2
4,652,117 + Xcc-8004.4893.1 0.18 +0.6
4,652,117 + Xcc-8004.4893.1 0.18 +0.4
4,652,117 + Xcc-8004.4893.1 0.18 -2.1
4,652,118 - Xcc-8004.4893.1 0.18 -0.0
4,652,118 - Xcc-8004.4893.1 0.18 +1.2
4,652,118 - Xcc-8004.4893.1 0.18 -1.6
4,652,118 - Xcc-8004.4893.1 0.18 -0.5
4,652,118 - Xcc-8004.4893.1 0.18 -3.3
4,652,118 - Xcc-8004.4893.1 0.18 +0.2
4,652,118 - Xcc-8004.4893.1 0.18 +1.1
4,652,118 - Xcc-8004.4893.1 0.18 +0.4
4,652,118 - Xcc-8004.4893.1 0.18 -1.8
4,652,118 - Xcc-8004.4893.1 0.18 +0.6
4,652,118 - Xcc-8004.4893.1 0.18 -1.9
4,652,118 - Xcc-8004.4893.1 0.18 +0.6
4,652,118 - Xcc-8004.4893.1 0.18 +0.4
4,652,141 + Xcc-8004.4893.1 0.22 -0.1
4,652,141 + Xcc-8004.4893.1 0.22 +0.4
4,652,142 - Xcc-8004.4893.1 0.23 +0.1
4,652,197 - Xcc-8004.4893.1 0.33 +0.3
4,652,479 + Xcc-8004.4893.1 0.84 -1.2
4,652,479 + Xcc-8004.4893.1 0.84 -1.0
4,652,749 + +0.4
4,652,749 + +0.7
4,652,749 + +1.1
4,652,749 + -0.4
4,652,749 + -2.1
4,652,750 - +0.3
4,652,750 - -0.5

Or see this region's nucleotide sequence