Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4824.1 and Xcc-8004.4825.1 are separated by 255 nucleotides Xcc-8004.4825.1 and Xcc-8004.4826.1 are separated by 94 nucleotides
Xcc-8004.4824.1: Xcc-8004.4824.1 - Beta-glucosidase (EC 3.2.1.21), at 4,589,856 to 4,592,027
Xcc-8004.4824.1
Xcc-8004.4825.1: Xcc-8004.4825.1 - Dihydroneopterin aldolase (EC 4.1.2.25), at 4,592,283 to 4,592,636
Xcc-8004.4825.1
Xcc-8004.4826.1: Xcc-8004.4826.1 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 4,592,731 to 4,593,795
Xcc-8004.4826.1
Position (kb) 4592
4593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4591.423 kb on + strand, within Xcc-8004.4824.1 at 4591.423 kb on + strand, within Xcc-8004.4824.1 at 4591.423 kb on + strand, within Xcc-8004.4824.1 at 4591.423 kb on + strand, within Xcc-8004.4824.1 at 4591.423 kb on + strand, within Xcc-8004.4824.1 at 4591.424 kb on - strand, within Xcc-8004.4824.1 at 4591.473 kb on - strand, within Xcc-8004.4824.1 at 4591.545 kb on - strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.624 kb on + strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4591.625 kb on - strand, within Xcc-8004.4824.1 at 4592.247 kb on + strand at 4592.259 kb on + strand at 4592.259 kb on + strand at 4592.260 kb on - strand at 4592.260 kb on - strand at 4592.260 kb on - strand at 4592.288 kb on + strand at 4592.288 kb on + strand at 4592.288 kb on + strand at 4592.289 kb on - strand at 4592.663 kb on - strand at 4592.670 kb on - strand at 4592.733 kb on - strand at 4592.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 4,591,423 + Xcc-8004.4824.1 0.72 -2.1 4,591,423 + Xcc-8004.4824.1 0.72 -2.1 4,591,423 + Xcc-8004.4824.1 0.72 -2.2 4,591,423 + Xcc-8004.4824.1 0.72 -3.8 4,591,423 + Xcc-8004.4824.1 0.72 -3.1 4,591,424 - Xcc-8004.4824.1 0.72 -1.1 4,591,473 - Xcc-8004.4824.1 0.74 -3.5 4,591,545 - Xcc-8004.4824.1 0.78 -1.9 4,591,624 + Xcc-8004.4824.1 0.81 -2.2 4,591,624 + Xcc-8004.4824.1 0.81 -4.2 4,591,624 + Xcc-8004.4824.1 0.81 -1.6 4,591,624 + Xcc-8004.4824.1 0.81 -3.6 4,591,624 + Xcc-8004.4824.1 0.81 -4.6 4,591,624 + Xcc-8004.4824.1 0.81 -2.8 4,591,624 + Xcc-8004.4824.1 0.81 -4.3 4,591,624 + Xcc-8004.4824.1 0.81 +0.9 4,591,624 + Xcc-8004.4824.1 0.81 -3.3 4,591,624 + Xcc-8004.4824.1 0.81 -3.9 4,591,625 - Xcc-8004.4824.1 0.81 -0.8 4,591,625 - Xcc-8004.4824.1 0.81 -2.9 4,591,625 - Xcc-8004.4824.1 0.81 -1.1 4,591,625 - Xcc-8004.4824.1 0.81 -0.6 4,591,625 - Xcc-8004.4824.1 0.81 -4.3 4,591,625 - Xcc-8004.4824.1 0.81 -3.8 4,591,625 - Xcc-8004.4824.1 0.81 -3.6 4,591,625 - Xcc-8004.4824.1 0.81 -3.9 4,591,625 - Xcc-8004.4824.1 0.81 -4.2 4,591,625 - Xcc-8004.4824.1 0.81 -0.5 4,591,625 - Xcc-8004.4824.1 0.81 -1.9 4,591,625 - Xcc-8004.4824.1 0.81 -3.1 4,592,247 + +1.0 4,592,259 + -0.7 4,592,259 + +0.0 4,592,260 - -0.3 4,592,260 - +0.1 4,592,260 - -2.1 4,592,288 + +0.2 4,592,288 + -0.7 4,592,288 + +1.3 4,592,289 - -0.4 4,592,663 - -0.9 4,592,670 - -0.2 4,592,733 - -0.9 4,592,733 - +0.3
Or see this region's nucleotide sequence