Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4741.1 and Xcc-8004.4742.1 overlap by 1 nucleotides Xcc-8004.4742.1 and Xcc-8004.4743.1 are separated by 179 nucleotides Xcc-8004.4743.1 and Xcc-8004.4744.1 are separated by 131 nucleotides
Xcc-8004.4741.1: Xcc-8004.4741.1 - hypothetical protein, at 4,512,258 to 4,513,568
Xcc-8004.4741.1
Xcc-8004.4742.1: Xcc-8004.4742.1 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,513,568 to 4,514,707
Xcc-8004.4742.1
Xcc-8004.4743.1: Xcc-8004.4743.1 - Peptide deformylase (EC 3.5.1.88), at 4,514,887 to 4,515,399
Xcc-8004.4743.1
Xcc-8004.4744.1: Xcc-8004.4744.1 - Uncharacterized protein with LysM domain, COG1652, at 4,515,531 to 4,516,667
Xcc-8004.4744.1
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.006 kb on + strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.007 kb on - strand, within Xcc-8004.4741.1 at 4513.035 kb on + strand, within Xcc-8004.4741.1 at 4513.378 kb on + strand, within Xcc-8004.4741.1 at 4513.378 kb on + strand, within Xcc-8004.4741.1 at 4513.379 kb on - strand, within Xcc-8004.4741.1 at 4514.492 kb on - strand, within Xcc-8004.4742.1 at 4514.492 kb on - strand, within Xcc-8004.4742.1 at 4514.543 kb on - strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.571 kb on + strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.572 kb on - strand, within Xcc-8004.4742.1 at 4514.640 kb on + strand at 4514.640 kb on + strand at 4514.641 kb on - strand at 4514.702 kb on - strand at 4514.702 kb on - strand at 4514.954 kb on + strand, within Xcc-8004.4743.1 at 4514.954 kb on + strand, within Xcc-8004.4743.1 at 4514.954 kb on + strand, within Xcc-8004.4743.1 at 4514.954 kb on + strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4514.955 kb on - strand, within Xcc-8004.4743.1 at 4515.452 kb on + strand at 4515.452 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.488 kb on + strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.489 kb on - strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.490 kb on + strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.491 kb on - strand at 4515.548 kb on + strand at 4515.549 kb on - strand at 4515.549 kb on - strand at 4515.549 kb on - strand at 4515.549 kb on - strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.585 kb on + strand at 4515.586 kb on - strand at 4515.586 kb on - strand at 4515.586 kb on - strand at 4515.586 kb on - strand at 4515.586 kb on - strand at 4515.586 kb on - strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.620 kb on + strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.621 kb on - strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.624 kb on + strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.625 kb on - strand at 4515.645 kb on - strand, within Xcc-8004.4744.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 4,513,006 + Xcc-8004.4741.1 0.57 +0.2 4,513,006 + Xcc-8004.4741.1 0.57 -0.2 4,513,006 + Xcc-8004.4741.1 0.57 -1.2 4,513,006 + Xcc-8004.4741.1 0.57 -2.5 4,513,006 + Xcc-8004.4741.1 0.57 +0.4 4,513,006 + Xcc-8004.4741.1 0.57 +0.4 4,513,006 + Xcc-8004.4741.1 0.57 -2.0 4,513,007 - Xcc-8004.4741.1 0.57 -1.6 4,513,007 - Xcc-8004.4741.1 0.57 -0.2 4,513,007 - Xcc-8004.4741.1 0.57 +2.6 4,513,007 - Xcc-8004.4741.1 0.57 +0.4 4,513,007 - Xcc-8004.4741.1 0.57 +0.6 4,513,007 - Xcc-8004.4741.1 0.57 +1.1 4,513,035 + Xcc-8004.4741.1 0.59 +0.2 4,513,378 + Xcc-8004.4741.1 0.85 -1.3 4,513,378 + Xcc-8004.4741.1 0.85 -1.3 4,513,379 - Xcc-8004.4741.1 0.86 -1.6 4,514,492 - Xcc-8004.4742.1 0.81 -3.1 4,514,492 - Xcc-8004.4742.1 0.81 -0.3 4,514,543 - Xcc-8004.4742.1 0.86 -0.2 4,514,571 + Xcc-8004.4742.1 0.88 -1.3 4,514,571 + Xcc-8004.4742.1 0.88 +0.2 4,514,571 + Xcc-8004.4742.1 0.88 -2.5 4,514,571 + Xcc-8004.4742.1 0.88 -0.2 4,514,571 + Xcc-8004.4742.1 0.88 -2.5 4,514,571 + Xcc-8004.4742.1 0.88 -3.1 4,514,571 + Xcc-8004.4742.1 0.88 +1.0 4,514,571 + Xcc-8004.4742.1 0.88 -0.6 4,514,571 + Xcc-8004.4742.1 0.88 +1.0 4,514,571 + Xcc-8004.4742.1 0.88 -1.3 4,514,571 + Xcc-8004.4742.1 0.88 -3.0 4,514,571 + Xcc-8004.4742.1 0.88 +0.6 4,514,572 - Xcc-8004.4742.1 0.88 +1.5 4,514,572 - Xcc-8004.4742.1 0.88 -0.7 4,514,572 - Xcc-8004.4742.1 0.88 -0.9 4,514,572 - Xcc-8004.4742.1 0.88 -0.3 4,514,572 - Xcc-8004.4742.1 0.88 -0.6 4,514,572 - Xcc-8004.4742.1 0.88 -0.3 4,514,572 - Xcc-8004.4742.1 0.88 +0.5 4,514,572 - Xcc-8004.4742.1 0.88 +0.8 4,514,572 - Xcc-8004.4742.1 0.88 +1.0 4,514,572 - Xcc-8004.4742.1 0.88 +0.1 4,514,572 - Xcc-8004.4742.1 0.88 -0.1 4,514,572 - Xcc-8004.4742.1 0.88 +0.1 4,514,572 - Xcc-8004.4742.1 0.88 -2.9 4,514,572 - Xcc-8004.4742.1 0.88 +1.0 4,514,572 - Xcc-8004.4742.1 0.88 -0.8 4,514,572 - Xcc-8004.4742.1 0.88 +1.4 4,514,572 - Xcc-8004.4742.1 0.88 +0.7 4,514,572 - Xcc-8004.4742.1 0.88 +0.7 4,514,572 - Xcc-8004.4742.1 0.88 +0.9 4,514,572 - Xcc-8004.4742.1 0.88 -0.7 4,514,640 + -1.3 4,514,640 + +0.6 4,514,641 - -1.3 4,514,702 - -1.2 4,514,702 - +2.0 4,514,954 + Xcc-8004.4743.1 0.13 -1.1 4,514,954 + Xcc-8004.4743.1 0.13 -2.5 4,514,954 + Xcc-8004.4743.1 0.13 -0.5 4,514,954 + Xcc-8004.4743.1 0.13 -1.0 4,514,955 - Xcc-8004.4743.1 0.13 +0.6 4,514,955 - Xcc-8004.4743.1 0.13 +1.4 4,514,955 - Xcc-8004.4743.1 0.13 -0.2 4,514,955 - Xcc-8004.4743.1 0.13 +0.3 4,514,955 - Xcc-8004.4743.1 0.13 +1.2 4,514,955 - Xcc-8004.4743.1 0.13 +1.0 4,514,955 - Xcc-8004.4743.1 0.13 -0.5 4,514,955 - Xcc-8004.4743.1 0.13 +0.6 4,514,955 - Xcc-8004.4743.1 0.13 -2.0 4,514,955 - Xcc-8004.4743.1 0.13 +1.0 4,514,955 - Xcc-8004.4743.1 0.13 -1.6 4,515,452 + -0.7 4,515,452 + +0.4 4,515,488 + -1.0 4,515,488 + +0.5 4,515,488 + -0.1 4,515,488 + +0.4 4,515,488 + -1.2 4,515,488 + +0.1 4,515,488 + +0.1 4,515,488 + -2.5 4,515,488 + -0.3 4,515,488 + -0.5 4,515,488 + +1.1 4,515,488 + +1.1 4,515,489 - +0.6 4,515,489 - +0.9 4,515,489 - -2.0 4,515,489 - -0.2 4,515,489 - +1.3 4,515,489 - -0.5 4,515,489 - -0.1 4,515,489 - -0.1 4,515,489 - -0.7 4,515,489 - -0.0 4,515,489 - -1.4 4,515,489 - +0.4 4,515,490 + -1.2 4,515,490 + +1.7 4,515,490 + -2.0 4,515,490 + +0.6 4,515,490 + -1.3 4,515,490 + +1.4 4,515,490 + +1.1 4,515,490 + +1.1 4,515,490 + +0.5 4,515,490 + -0.0 4,515,490 + -0.2 4,515,490 + -0.9 4,515,490 + +1.4 4,515,490 + -2.0 4,515,491 - +1.4 4,515,491 - +3.2 4,515,491 - -0.5 4,515,491 - -0.9 4,515,491 - +0.6 4,515,491 - +1.0 4,515,491 - -0.7 4,515,491 - +0.4 4,515,491 - +0.2 4,515,491 - -0.6 4,515,491 - +2.0 4,515,491 - +0.6 4,515,491 - -1.5 4,515,491 - +0.4 4,515,491 - -0.2 4,515,491 - -0.5 4,515,491 - +0.7 4,515,491 - +2.1 4,515,491 - -0.6 4,515,491 - +1.4 4,515,491 - -1.1 4,515,491 - +1.4 4,515,548 + -0.0 4,515,549 - -0.0 4,515,549 - +2.0 4,515,549 - -0.8 4,515,549 - -0.0 4,515,585 + -0.7 4,515,585 + +1.2 4,515,585 + +0.7 4,515,585 + -2.3 4,515,585 + +1.7 4,515,585 + -1.5 4,515,585 + -2.6 4,515,585 + +1.0 4,515,585 + -2.2 4,515,585 + +1.0 4,515,586 - +0.8 4,515,586 - -3.2 4,515,586 - +0.5 4,515,586 - +0.6 4,515,586 - -0.7 4,515,586 - +1.0 4,515,620 + -2.7 4,515,620 + -1.8 4,515,620 + +1.0 4,515,620 + -0.1 4,515,620 + -0.6 4,515,620 + +0.9 4,515,620 + -0.1 4,515,620 + +0.2 4,515,620 + +0.2 4,515,620 + -0.6 4,515,620 + -1.8 4,515,621 - -0.5 4,515,621 - -0.5 4,515,621 - -2.5 4,515,621 - +0.0 4,515,621 - -1.3 4,515,621 - -2.0 4,515,621 - -0.9 4,515,621 - +0.5 4,515,621 - +2.3 4,515,621 - +0.7 4,515,621 - +1.2 4,515,621 - -0.8 4,515,621 - -1.6 4,515,621 - +1.1 4,515,624 + -2.2 4,515,624 + +0.6 4,515,624 + +0.9 4,515,624 + +0.9 4,515,624 + +1.6 4,515,624 + -0.6 4,515,624 + +1.3 4,515,624 + -0.1 4,515,624 + +1.5 4,515,624 + -1.0 4,515,624 + +1.2 4,515,624 + +0.5 4,515,624 + -1.2 4,515,624 + -3.1 4,515,624 + +2.6 4,515,624 + -1.1 4,515,624 + -2.0 4,515,624 + -0.3 4,515,624 + +1.9 4,515,624 + +0.0 4,515,624 + -0.5 4,515,624 + -1.2 4,515,624 + -0.3 4,515,624 + +0.8 4,515,624 + +0.1 4,515,624 + +0.1 4,515,624 + +0.4 4,515,624 + -1.3 4,515,624 + -0.3 4,515,624 + -0.4 4,515,624 + -0.2 4,515,624 + +0.9 4,515,624 + +0.6 4,515,624 + -0.6 4,515,624 + -0.7 4,515,624 + -0.5 4,515,624 + -0.3 4,515,624 + -2.5 4,515,624 + +0.8 4,515,624 + -0.4 4,515,624 + -1.5 4,515,624 + +2.1 4,515,624 + +0.7 4,515,624 + +0.8 4,515,624 + +0.2 4,515,624 + -0.1 4,515,624 + +0.2 4,515,624 + -0.4 4,515,624 + -0.9 4,515,624 + +0.7 4,515,624 + -1.7 4,515,624 + +1.0 4,515,624 + +1.0 4,515,624 + +2.0 4,515,624 + -1.2 4,515,625 - +1.1 4,515,625 - +1.6 4,515,625 - -1.2 4,515,625 - -2.0 4,515,625 - +0.1 4,515,625 - -1.7 4,515,625 - -1.6 4,515,625 - +0.1 4,515,625 - +3.2 4,515,625 - -1.8 4,515,625 - -0.5 4,515,625 - +2.0 4,515,625 - +1.4 4,515,625 - -0.6 4,515,625 - -0.9 4,515,625 - +1.4 4,515,625 - -1.3 4,515,625 - -0.9 4,515,625 - -0.5 4,515,625 - +1.1 4,515,625 - +0.9 4,515,625 - +1.7 4,515,625 - +1.0 4,515,625 - -0.7 4,515,625 - +1.2 4,515,625 - +0.1 4,515,625 - +0.6 4,515,625 - -1.4 4,515,625 - +1.3 4,515,625 - -0.4 4,515,625 - +0.2 4,515,625 - -0.3 4,515,625 - -1.5 4,515,625 - +0.2 4,515,625 - +1.6 4,515,625 - -1.6 4,515,625 - -0.6 4,515,625 - +1.0 4,515,625 - -0.0 4,515,625 - +0.0 4,515,625 - +0.1 4,515,625 - -1.3 4,515,625 - -1.7 4,515,625 - -0.7 4,515,625 - -0.2 4,515,625 - -0.7 4,515,625 - -1.3 4,515,625 - -0.3 4,515,645 - Xcc-8004.4744.1 0.10 +1.5
Or see this region's nucleotide sequence