Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4647.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4646.1 and Xcc-8004.4647.1 are separated by 53 nucleotidesXcc-8004.4647.1 and Xcc-8004.4648.1 are separated by 518 nucleotides Xcc-8004.4646.1: Xcc-8004.4646.1 - Transcriptional regulator, LysR family, at 4,425,425 to 4,426,360 Xcc-8004.4646.1 Xcc-8004.4647.1: Xcc-8004.4647.1 - tryptophan repressor binding protein, at 4,426,414 to 4,426,983 Xcc-8004.4647.1 Xcc-8004.4648.1: Xcc-8004.4648.1 - Oxidoreductase, at 4,427,502 to 4,428,497 Xcc-8004.4648.1 Position (kb) 4426 4427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4425.617 kb on + strand, within Xcc-8004.4646.1at 4425.617 kb on + strand, within Xcc-8004.4646.1at 4425.617 kb on + strand, within Xcc-8004.4646.1at 4425.618 kb on - strand, within Xcc-8004.4646.1at 4425.620 kb on + strand, within Xcc-8004.4646.1at 4425.620 kb on + strand, within Xcc-8004.4646.1at 4425.621 kb on - strand, within Xcc-8004.4646.1at 4425.621 kb on - strand, within Xcc-8004.4646.1at 4425.935 kb on + strand, within Xcc-8004.4646.1at 4425.935 kb on + strand, within Xcc-8004.4646.1at 4425.935 kb on + strand, within Xcc-8004.4646.1at 4425.936 kb on - strand, within Xcc-8004.4646.1at 4425.936 kb on - strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.998 kb on + strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4425.999 kb on - strand, within Xcc-8004.4646.1at 4426.004 kb on + strand, within Xcc-8004.4646.1at 4426.004 kb on + strand, within Xcc-8004.4646.1at 4426.202 kb on + strand, within Xcc-8004.4646.1at 4426.203 kb on - strand, within Xcc-8004.4646.1at 4426.203 kb on - strand, within Xcc-8004.4646.1at 4426.203 kb on - strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.226 kb on + strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.227 kb on - strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.235 kb on + strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.236 kb on - strand, within Xcc-8004.4646.1at 4426.283 kb on + strandat 4426.283 kb on + strandat 4426.283 kb on + strandat 4426.283 kb on + strandat 4426.284 kb on - strandat 4426.284 kb on - strandat 4426.284 kb on - strandat 4426.284 kb on - strandat 4426.358 kb on + strandat 4426.358 kb on + strandat 4426.358 kb on + strandat 4426.359 kb on - strandat 4426.359 kb on - strandat 4426.435 kb on + strandat 4426.436 kb on - strandat 4426.436 kb on - strandat 4426.517 kb on - strand, within Xcc-8004.4647.1at 4426.517 kb on - strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.588 kb on + strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.589 kb on - strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.603 kb on + strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.604 kb on - strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.732 kb on + strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.733 kb on - strand, within Xcc-8004.4647.1at 4426.747 kb on + strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4426.748 kb on - strand, within Xcc-8004.4647.1at 4427.035 kb on + strandat 4427.035 kb on + strandat 4427.035 kb on + strandat 4427.036 kb on - strandat 4427.036 kb on - strandat 4427.036 kb on - strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.081 kb on + strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.082 kb on - strandat 4427.208 kb on - strandat 4427.208 kb on - strandat 4427.445 kb on + strandat 4427.446 kb on - strandat 4427.446 kb on - strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.580 kb on + strandat 4427.581 kb on - strandat 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.670 kb on + strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.671 kb on - strand, within Xcc-8004.4648.1at 4427.809 kb on - strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.868 kb on + strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.869 kb on - strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1at 4427.871 kb on + strand, within Xcc-8004.4648.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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4,425,617 + Xcc-8004.4646.1 0.21 -0.4
4,425,617 + Xcc-8004.4646.1 0.21 +1.0
4,425,617 + Xcc-8004.4646.1 0.21 -1.2
4,425,618 - Xcc-8004.4646.1 0.21 -0.6
4,425,620 + Xcc-8004.4646.1 0.21 -1.8
4,425,620 + Xcc-8004.4646.1 0.21 -2.3
4,425,621 - Xcc-8004.4646.1 0.21 -1.1
4,425,621 - Xcc-8004.4646.1 0.21 +0.7
4,425,935 + Xcc-8004.4646.1 0.54 +0.3
4,425,935 + Xcc-8004.4646.1 0.54 -0.6
4,425,935 + Xcc-8004.4646.1 0.54 -1.3
4,425,936 - Xcc-8004.4646.1 0.55 +0.4
4,425,936 - Xcc-8004.4646.1 0.55 -0.1
4,425,998 + Xcc-8004.4646.1 0.61 -2.8
4,425,998 + Xcc-8004.4646.1 0.61 +2.1
4,425,998 + Xcc-8004.4646.1 0.61 -1.4
4,425,998 + Xcc-8004.4646.1 0.61 -2.6
4,425,998 + Xcc-8004.4646.1 0.61 +2.0
4,425,998 + Xcc-8004.4646.1 0.61 +0.7
4,425,998 + Xcc-8004.4646.1 0.61 +0.8
4,425,999 - Xcc-8004.4646.1 0.61 +0.8
4,425,999 - Xcc-8004.4646.1 0.61 +0.3
4,425,999 - Xcc-8004.4646.1 0.61 -0.8
4,425,999 - Xcc-8004.4646.1 0.61 +0.5
4,425,999 - Xcc-8004.4646.1 0.61 +2.4
4,425,999 - Xcc-8004.4646.1 0.61 -1.6
4,426,004 + Xcc-8004.4646.1 0.62 +0.0
4,426,004 + Xcc-8004.4646.1 0.62 +1.0
4,426,202 + Xcc-8004.4646.1 0.83 +0.6
4,426,203 - Xcc-8004.4646.1 0.83 +0.4
4,426,203 - Xcc-8004.4646.1 0.83 -1.3
4,426,203 - Xcc-8004.4646.1 0.83 -0.4
4,426,226 + Xcc-8004.4646.1 0.86 +2.0
4,426,226 + Xcc-8004.4646.1 0.86 +1.2
4,426,226 + Xcc-8004.4646.1 0.86 -1.8
4,426,226 + Xcc-8004.4646.1 0.86 +0.2
4,426,226 + Xcc-8004.4646.1 0.86 +0.2
4,426,226 + Xcc-8004.4646.1 0.86 -2.8
4,426,226 + Xcc-8004.4646.1 0.86 -1.9
4,426,226 + Xcc-8004.4646.1 0.86 +0.8
4,426,226 + Xcc-8004.4646.1 0.86 -0.2
4,426,226 + Xcc-8004.4646.1 0.86 +1.3
4,426,226 + Xcc-8004.4646.1 0.86 +0.0
4,426,226 + Xcc-8004.4646.1 0.86 +2.4
4,426,227 - Xcc-8004.4646.1 0.86 +0.2
4,426,227 - Xcc-8004.4646.1 0.86 +2.2
4,426,227 - Xcc-8004.4646.1 0.86 -0.2
4,426,227 - Xcc-8004.4646.1 0.86 -0.2
4,426,227 - Xcc-8004.4646.1 0.86 +1.3
4,426,227 - Xcc-8004.4646.1 0.86 +1.1
4,426,227 - Xcc-8004.4646.1 0.86 +0.2
4,426,227 - Xcc-8004.4646.1 0.86 -1.3
4,426,227 - Xcc-8004.4646.1 0.86 +0.6
4,426,227 - Xcc-8004.4646.1 0.86 -0.6
4,426,235 + Xcc-8004.4646.1 0.87 +0.2
4,426,235 + Xcc-8004.4646.1 0.87 +0.9
4,426,235 + Xcc-8004.4646.1 0.87 -0.5
4,426,235 + Xcc-8004.4646.1 0.87 -0.5
4,426,235 + Xcc-8004.4646.1 0.87 -0.1
4,426,235 + Xcc-8004.4646.1 0.87 -1.3
4,426,235 + Xcc-8004.4646.1 0.87 +0.7
4,426,235 + Xcc-8004.4646.1 0.87 -0.3
4,426,236 - Xcc-8004.4646.1 0.87 -2.0
4,426,236 - Xcc-8004.4646.1 0.87 +0.9
4,426,236 - Xcc-8004.4646.1 0.87 -0.5
4,426,236 - Xcc-8004.4646.1 0.87 +1.4
4,426,236 - Xcc-8004.4646.1 0.87 +0.3
4,426,236 - Xcc-8004.4646.1 0.87 -2.2
4,426,236 - Xcc-8004.4646.1 0.87 -2.3
4,426,236 - Xcc-8004.4646.1 0.87 -2.9
4,426,283 + -1.3
4,426,283 + -2.8
4,426,283 + -1.6
4,426,283 + +0.2
4,426,284 - -2.0
4,426,284 - -1.7
4,426,284 - -1.3
4,426,284 - -1.6
4,426,358 + -2.5
4,426,358 + +0.2
4,426,358 + -0.2
4,426,359 - +0.4
4,426,359 - -1.1
4,426,435 + +1.6
4,426,436 - +1.8
4,426,436 - +0.5
4,426,517 - Xcc-8004.4647.1 0.18 -2.6
4,426,517 - Xcc-8004.4647.1 0.18 +1.0
4,426,588 + Xcc-8004.4647.1 0.31 -0.7
4,426,588 + Xcc-8004.4647.1 0.31 +1.6
4,426,588 + Xcc-8004.4647.1 0.31 +1.0
4,426,588 + Xcc-8004.4647.1 0.31 +0.6
4,426,589 - Xcc-8004.4647.1 0.31 +1.0
4,426,589 - Xcc-8004.4647.1 0.31 +1.0
4,426,589 - Xcc-8004.4647.1 0.31 -0.8
4,426,589 - Xcc-8004.4647.1 0.31 -1.1
4,426,589 - Xcc-8004.4647.1 0.31 +0.2
4,426,589 - Xcc-8004.4647.1 0.31 +0.2
4,426,589 - Xcc-8004.4647.1 0.31 -1.6
4,426,589 - Xcc-8004.4647.1 0.31 +0.2
4,426,589 - Xcc-8004.4647.1 0.31 +1.2
4,426,603 + Xcc-8004.4647.1 0.33 +1.2
4,426,603 + Xcc-8004.4647.1 0.33 +0.7
4,426,603 + Xcc-8004.4647.1 0.33 +1.8
4,426,603 + Xcc-8004.4647.1 0.33 -0.7
4,426,603 + Xcc-8004.4647.1 0.33 -2.3
4,426,603 + Xcc-8004.4647.1 0.33 +0.1
4,426,604 - Xcc-8004.4647.1 0.33 -0.2
4,426,604 - Xcc-8004.4647.1 0.33 -0.9
4,426,604 - Xcc-8004.4647.1 0.33 -2.4
4,426,604 - Xcc-8004.4647.1 0.33 -0.8
4,426,604 - Xcc-8004.4647.1 0.33 +2.0
4,426,604 - Xcc-8004.4647.1 0.33 +0.7
4,426,732 + Xcc-8004.4647.1 0.56 -3.0
4,426,732 + Xcc-8004.4647.1 0.56 +1.3
4,426,732 + Xcc-8004.4647.1 0.56 -0.2
4,426,733 - Xcc-8004.4647.1 0.56 +0.8
4,426,733 - Xcc-8004.4647.1 0.56 -0.6
4,426,733 - Xcc-8004.4647.1 0.56 +0.3
4,426,733 - Xcc-8004.4647.1 0.56 -2.8
4,426,733 - Xcc-8004.4647.1 0.56 +0.0
4,426,733 - Xcc-8004.4647.1 0.56 -0.4
4,426,733 - Xcc-8004.4647.1 0.56 +0.9
4,426,733 - Xcc-8004.4647.1 0.56 +0.9
4,426,733 - Xcc-8004.4647.1 0.56 +1.5
4,426,747 + Xcc-8004.4647.1 0.58 -0.3
4,426,748 - Xcc-8004.4647.1 0.59 -0.6
4,426,748 - Xcc-8004.4647.1 0.59 +0.2
4,426,748 - Xcc-8004.4647.1 0.59 +0.8
4,426,748 - Xcc-8004.4647.1 0.59 +0.6
4,426,748 - Xcc-8004.4647.1 0.59 +1.9
4,427,035 + -0.2
4,427,035 + +0.5
4,427,035 + -0.0
4,427,036 - -1.2
4,427,036 - +0.9
4,427,036 - -0.6
4,427,081 + -0.0
4,427,081 + +0.0
4,427,081 + +1.4
4,427,081 + -0.6
4,427,081 + -0.5
4,427,081 + +0.6
4,427,082 - +1.5
4,427,082 - -1.3
4,427,082 - +1.5
4,427,082 - -2.0
4,427,082 - +1.4
4,427,208 - +0.4
4,427,208 - +1.8
4,427,445 + -0.7
4,427,446 - -0.8
4,427,446 - +0.6
4,427,580 + +1.6
4,427,580 + +1.4
4,427,580 + +0.2
4,427,580 + +0.2
4,427,581 - -0.7
4,427,670 + Xcc-8004.4648.1 0.17 +1.0
4,427,670 + Xcc-8004.4648.1 0.17 -2.2
4,427,670 + Xcc-8004.4648.1 0.17 -0.6
4,427,670 + Xcc-8004.4648.1 0.17 -4.3
4,427,670 + Xcc-8004.4648.1 0.17 +0.8
4,427,670 + Xcc-8004.4648.1 0.17 -0.6
4,427,671 - Xcc-8004.4648.1 0.17 +1.3
4,427,671 - Xcc-8004.4648.1 0.17 -0.4
4,427,671 - Xcc-8004.4648.1 0.17 +0.2
4,427,671 - Xcc-8004.4648.1 0.17 -0.2
4,427,671 - Xcc-8004.4648.1 0.17 +3.8
4,427,671 - Xcc-8004.4648.1 0.17 -0.3
4,427,671 - Xcc-8004.4648.1 0.17 +1.5
4,427,671 - Xcc-8004.4648.1 0.17 +0.4
4,427,671 - Xcc-8004.4648.1 0.17 -0.9
4,427,671 - Xcc-8004.4648.1 0.17 -0.6
4,427,809 - Xcc-8004.4648.1 0.31 +0.4
4,427,868 + Xcc-8004.4648.1 0.37 +1.4
4,427,868 + Xcc-8004.4648.1 0.37 -0.6
4,427,868 + Xcc-8004.4648.1 0.37 -1.0
4,427,869 - Xcc-8004.4648.1 0.37 +0.7
4,427,869 - Xcc-8004.4648.1 0.37 +0.6
4,427,869 - Xcc-8004.4648.1 0.37 -0.1
4,427,871 + Xcc-8004.4648.1 0.37 -0.5
4,427,871 + Xcc-8004.4648.1 0.37 -0.5
4,427,871 + Xcc-8004.4648.1 0.37 -0.2

Or see this region's nucleotide sequence