Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4220.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4219.1 and Xcc-8004.4220.1 are separated by 174 nucleotidesXcc-8004.4220.1 and Xcc-8004.4221.1 are separated by 220 nucleotidesXcc-8004.4221.1 and Xcc-8004.4222.1 are separated by 189 nucleotides Xcc-8004.4219.1: Xcc-8004.4219.1 - Proline iminopeptidase (EC 3.4.11.5), at 4,045,588 to 4,046,529 Xcc-8004.4219.1 Xcc-8004.4220.1: Xcc-8004.4220.1 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 4,046,704 to 4,047,534 Xcc-8004.4220.1 Xcc-8004.4221.1: Xcc-8004.4221.1 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 4,047,755 to 4,048,318 Xcc-8004.4221.1 Xcc-8004.4222.1: Xcc-8004.4222.1 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 4,048,508 to 4,050,097 Xcc-8004.4222.1 Position (kb) 4046 4047 4048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4045.736 kb on + strand, within Xcc-8004.4219.1at 4045.736 kb on + strand, within Xcc-8004.4219.1at 4045.737 kb on - strand, within Xcc-8004.4219.1at 4045.737 kb on - strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.832 kb on + strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.833 kb on - strand, within Xcc-8004.4219.1at 4045.845 kb on + strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4045.846 kb on - strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.045 kb on + strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.046 kb on - strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.090 kb on + strand, within Xcc-8004.4219.1at 4046.091 kb on - strand, within Xcc-8004.4219.1at 4046.174 kb on + strand, within Xcc-8004.4219.1at 4046.175 kb on - strand, within Xcc-8004.4219.1at 4046.175 kb on - strand, within Xcc-8004.4219.1at 4046.348 kb on + strand, within Xcc-8004.4219.1at 4046.348 kb on + strand, within Xcc-8004.4219.1at 4046.349 kb on - strand, within Xcc-8004.4219.1at 4046.349 kb on - strand, within Xcc-8004.4219.1at 4046.382 kb on + strand, within Xcc-8004.4219.1at 4046.382 kb on + strand, within Xcc-8004.4219.1at 4046.383 kb on - strand, within Xcc-8004.4219.1at 4046.383 kb on - strand, within Xcc-8004.4219.1at 4046.456 kb on + strandat 4046.457 kb on - strandat 4046.457 kb on - strandat 4046.457 kb on - strandat 4046.516 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.559 kb on + strandat 4046.560 kb on - strandat 4046.560 kb on - strandat 4046.560 kb on - strandat 4047.658 kb on + strandat 4047.659 kb on - strandat 4047.659 kb on - strandat 4047.659 kb on - strandat 4047.685 kb on + strandat 4047.685 kb on + strandat 4047.689 kb on + strandat 4047.689 kb on + strandat 4047.689 kb on + strandat 4047.689 kb on + strandat 4047.689 kb on + strandat 4047.689 kb on + strandat 4047.690 kb on - strandat 4047.690 kb on - strandat 4047.690 kb on - strandat 4047.698 kb on + strandat 4047.698 kb on + strandat 4047.698 kb on + strandat 4047.698 kb on + strandat 4047.699 kb on - strandat 4047.699 kb on - strandat 4047.699 kb on - strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.702 kb on + strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.703 kb on - strandat 4047.926 kb on + strand, within Xcc-8004.4221.1at 4047.926 kb on + strand, within Xcc-8004.4221.1at 4047.926 kb on + strand, within Xcc-8004.4221.1at 4047.926 kb on + strand, within Xcc-8004.4221.1at 4047.927 kb on - strand, within Xcc-8004.4221.1at 4047.927 kb on - strand, within Xcc-8004.4221.1at 4047.927 kb on - strand, within Xcc-8004.4221.1at 4047.927 kb on - strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.959 kb on + strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4047.960 kb on - strand, within Xcc-8004.4221.1at 4048.316 kb on + strandat 4048.316 kb on + strandat 4048.316 kb on + strandat 4048.316 kb on + strandat 4048.316 kb on + strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strandat 4048.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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4,045,736 + Xcc-8004.4219.1 0.16 +0.2
4,045,736 + Xcc-8004.4219.1 0.16 +1.4
4,045,737 - Xcc-8004.4219.1 0.16 +1.2
4,045,737 - Xcc-8004.4219.1 0.16 +0.5
4,045,832 + Xcc-8004.4219.1 0.26 +0.2
4,045,832 + Xcc-8004.4219.1 0.26 +0.5
4,045,832 + Xcc-8004.4219.1 0.26 -0.0
4,045,832 + Xcc-8004.4219.1 0.26 -0.8
4,045,832 + Xcc-8004.4219.1 0.26 +0.8
4,045,833 - Xcc-8004.4219.1 0.26 +0.0
4,045,833 - Xcc-8004.4219.1 0.26 +0.1
4,045,833 - Xcc-8004.4219.1 0.26 +0.9
4,045,833 - Xcc-8004.4219.1 0.26 -3.8
4,045,833 - Xcc-8004.4219.1 0.26 +1.5
4,045,833 - Xcc-8004.4219.1 0.26 +0.3
4,045,845 + Xcc-8004.4219.1 0.27 +0.6
4,045,846 - Xcc-8004.4219.1 0.27 +0.5
4,045,846 - Xcc-8004.4219.1 0.27 -2.5
4,045,846 - Xcc-8004.4219.1 0.27 +0.2
4,046,045 + Xcc-8004.4219.1 0.49 -0.6
4,046,045 + Xcc-8004.4219.1 0.49 -0.7
4,046,045 + Xcc-8004.4219.1 0.49 +0.9
4,046,045 + Xcc-8004.4219.1 0.49 +0.7
4,046,045 + Xcc-8004.4219.1 0.49 +1.3
4,046,045 + Xcc-8004.4219.1 0.49 -0.9
4,046,045 + Xcc-8004.4219.1 0.49 -0.5
4,046,045 + Xcc-8004.4219.1 0.49 -0.0
4,046,045 + Xcc-8004.4219.1 0.49 +1.1
4,046,045 + Xcc-8004.4219.1 0.49 +0.1
4,046,045 + Xcc-8004.4219.1 0.49 +1.4
4,046,045 + Xcc-8004.4219.1 0.49 -1.8
4,046,045 + Xcc-8004.4219.1 0.49 -0.1
4,046,045 + Xcc-8004.4219.1 0.49 -3.0
4,046,045 + Xcc-8004.4219.1 0.49 -0.2
4,046,045 + Xcc-8004.4219.1 0.49 -1.1
4,046,045 + Xcc-8004.4219.1 0.49 -0.5
4,046,045 + Xcc-8004.4219.1 0.49 +0.6
4,046,045 + Xcc-8004.4219.1 0.49 +0.3
4,046,045 + Xcc-8004.4219.1 0.49 +1.2
4,046,045 + Xcc-8004.4219.1 0.49 +0.6
4,046,045 + Xcc-8004.4219.1 0.49 +0.1
4,046,045 + Xcc-8004.4219.1 0.49 -0.8
4,046,045 + Xcc-8004.4219.1 0.49 +1.9
4,046,045 + Xcc-8004.4219.1 0.49 -0.0
4,046,046 - Xcc-8004.4219.1 0.49 -0.3
4,046,046 - Xcc-8004.4219.1 0.49 +0.3
4,046,046 - Xcc-8004.4219.1 0.49 -0.8
4,046,046 - Xcc-8004.4219.1 0.49 -0.4
4,046,046 - Xcc-8004.4219.1 0.49 +1.1
4,046,046 - Xcc-8004.4219.1 0.49 +0.6
4,046,046 - Xcc-8004.4219.1 0.49 +1.7
4,046,046 - Xcc-8004.4219.1 0.49 -2.7
4,046,046 - Xcc-8004.4219.1 0.49 -0.1
4,046,046 - Xcc-8004.4219.1 0.49 +0.4
4,046,046 - Xcc-8004.4219.1 0.49 +0.0
4,046,046 - Xcc-8004.4219.1 0.49 +1.6
4,046,046 - Xcc-8004.4219.1 0.49 -0.3
4,046,046 - Xcc-8004.4219.1 0.49 -0.5
4,046,046 - Xcc-8004.4219.1 0.49 -2.1
4,046,046 - Xcc-8004.4219.1 0.49 +0.8
4,046,046 - Xcc-8004.4219.1 0.49 +0.8
4,046,090 + Xcc-8004.4219.1 0.53 -0.3
4,046,090 + Xcc-8004.4219.1 0.53 -0.8
4,046,090 + Xcc-8004.4219.1 0.53 -0.8
4,046,090 + Xcc-8004.4219.1 0.53 +0.0
4,046,091 - Xcc-8004.4219.1 0.53 -1.3
4,046,174 + Xcc-8004.4219.1 0.62 +0.4
4,046,175 - Xcc-8004.4219.1 0.62 -1.4
4,046,175 - Xcc-8004.4219.1 0.62 +1.2
4,046,348 + Xcc-8004.4219.1 0.81 +0.9
4,046,348 + Xcc-8004.4219.1 0.81 -1.7
4,046,349 - Xcc-8004.4219.1 0.81 -0.2
4,046,349 - Xcc-8004.4219.1 0.81 +1.9
4,046,382 + Xcc-8004.4219.1 0.84 -0.2
4,046,382 + Xcc-8004.4219.1 0.84 +0.1
4,046,383 - Xcc-8004.4219.1 0.84 +1.3
4,046,383 - Xcc-8004.4219.1 0.84 -0.1
4,046,456 + -0.9
4,046,457 - -1.4
4,046,457 - -0.6
4,046,457 - +1.0
4,046,516 + +0.0
4,046,559 + -1.8
4,046,559 + +0.4
4,046,559 + -0.4
4,046,559 + -0.4
4,046,560 - -1.2
4,046,560 - -0.1
4,046,560 - +1.0
4,047,658 + -0.3
4,047,659 - -1.1
4,047,659 - +1.5
4,047,659 - +0.5
4,047,685 + -0.2
4,047,685 + -2.0
4,047,689 + -0.4
4,047,689 + -0.3
4,047,689 + -1.0
4,047,689 + -0.8
4,047,689 + -0.1
4,047,689 + -0.3
4,047,690 - -2.0
4,047,690 - +0.3
4,047,690 - +0.0
4,047,698 + -2.0
4,047,698 + -0.4
4,047,698 + +0.1
4,047,698 + -0.7
4,047,699 - +0.1
4,047,699 - +0.4
4,047,699 - -3.5
4,047,702 + +0.0
4,047,702 + -0.2
4,047,702 + -0.4
4,047,702 + -1.2
4,047,702 + -0.9
4,047,702 + +1.0
4,047,702 + +0.2
4,047,702 + +2.0
4,047,702 + -1.3
4,047,702 + +1.1
4,047,702 + -0.9
4,047,702 + +0.3
4,047,702 + +0.2
4,047,702 + +0.0
4,047,702 + -0.7
4,047,703 - +1.8
4,047,703 - +0.5
4,047,703 - +0.7
4,047,703 - +0.7
4,047,703 - -1.0
4,047,703 - -1.3
4,047,703 - +0.2
4,047,703 - -2.4
4,047,703 - +0.4
4,047,703 - +0.5
4,047,703 - +1.2
4,047,703 - +1.3
4,047,703 - +0.7
4,047,926 + Xcc-8004.4221.1 0.30 +1.0
4,047,926 + Xcc-8004.4221.1 0.30 +0.7
4,047,926 + Xcc-8004.4221.1 0.30 -3.0
4,047,926 + Xcc-8004.4221.1 0.30 +1.0
4,047,927 - Xcc-8004.4221.1 0.30 -2.6
4,047,927 - Xcc-8004.4221.1 0.30 -0.4
4,047,927 - Xcc-8004.4221.1 0.30 -0.4
4,047,927 - Xcc-8004.4221.1 0.30 -0.8
4,047,959 + Xcc-8004.4221.1 0.36 +2.9
4,047,959 + Xcc-8004.4221.1 0.36 -3.4
4,047,959 + Xcc-8004.4221.1 0.36 -0.1
4,047,959 + Xcc-8004.4221.1 0.36 -2.6
4,047,959 + Xcc-8004.4221.1 0.36 +0.4
4,047,959 + Xcc-8004.4221.1 0.36 +3.1
4,047,959 + Xcc-8004.4221.1 0.36 +0.1
4,047,959 + Xcc-8004.4221.1 0.36 -0.6
4,047,959 + Xcc-8004.4221.1 0.36 -0.9
4,047,960 - Xcc-8004.4221.1 0.36 -2.2
4,047,960 - Xcc-8004.4221.1 0.36 -1.3
4,047,960 - Xcc-8004.4221.1 0.36 -1.2
4,047,960 - Xcc-8004.4221.1 0.36 -0.2
4,047,960 - Xcc-8004.4221.1 0.36 -1.2
4,047,960 - Xcc-8004.4221.1 0.36 +0.0
4,047,960 - Xcc-8004.4221.1 0.36 +1.4
4,048,316 + +0.6
4,048,316 + +0.7
4,048,316 + -0.1
4,048,316 + +0.9
4,048,316 + +0.0
4,048,317 - -2.0
4,048,317 - +0.1
4,048,317 - +0.7
4,048,317 - -1.8
4,048,317 - +1.4
4,048,317 - -2.3
4,048,317 - -0.3
4,048,317 - +1.7

Or see this region's nucleotide sequence