Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4187.1 and Xcc-8004.4188.1 are separated by 121 nucleotides Xcc-8004.4188.1 and Xcc-8004.4189.1 overlap by 4 nucleotides Xcc-8004.4189.1 and Xcc-8004.4190.1 are separated by 135 nucleotides
Xcc-8004.4187.1: Xcc-8004.4187.1 - hypothetical protein, at 4,019,657 to 4,020,925
Xcc-8004.4187.1
Xcc-8004.4188.1: Xcc-8004.4188.1 - Trp repressor binding protein, at 4,021,047 to 4,021,643
Xcc-8004.4188.1
Xcc-8004.4189.1: Xcc-8004.4189.1 - FIG01210078: hypothetical protein, at 4,021,640 to 4,021,984
Xcc-8004.4189.1
Xcc-8004.4190.1: Xcc-8004.4190.1 - Xylanase, at 4,022,120 to 4,023,337
Xcc-8004.4190.1
Position (kb) 4021
4022 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.654 kb on + strand, within Xcc-8004.4187.1 at 4020.655 kb on - strand, within Xcc-8004.4187.1 at 4020.655 kb on - strand, within Xcc-8004.4187.1 at 4020.691 kb on + strand, within Xcc-8004.4187.1 at 4020.692 kb on - strand, within Xcc-8004.4187.1 at 4020.692 kb on - strand, within Xcc-8004.4187.1 at 4020.801 kb on + strand at 4020.802 kb on - strand at 4020.802 kb on - strand at 4020.802 kb on - strand at 4020.946 kb on - strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.068 kb on + strand at 4021.069 kb on - strand at 4021.069 kb on - strand at 4021.069 kb on - strand at 4021.069 kb on - strand at 4021.069 kb on - strand at 4021.071 kb on + strand at 4021.071 kb on + strand at 4021.071 kb on + strand at 4021.072 kb on - strand at 4021.072 kb on - strand at 4021.224 kb on + strand, within Xcc-8004.4188.1 at 4021.224 kb on + strand, within Xcc-8004.4188.1 at 4021.224 kb on + strand, within Xcc-8004.4188.1 at 4021.224 kb on + strand, within Xcc-8004.4188.1 at 4021.225 kb on - strand, within Xcc-8004.4188.1 at 4021.522 kb on - strand, within Xcc-8004.4188.1 at 4021.522 kb on - strand, within Xcc-8004.4188.1 at 4021.743 kb on + strand, within Xcc-8004.4189.1 at 4021.743 kb on + strand, within Xcc-8004.4189.1 at 4021.744 kb on - strand, within Xcc-8004.4189.1 at 4022.158 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.160 kb on + strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.161 kb on - strand at 4022.190 kb on + strand at 4022.190 kb on + strand at 4022.190 kb on + strand at 4022.190 kb on + strand at 4022.191 kb on - strand at 4022.191 kb on - strand at 4022.191 kb on - strand at 4022.191 kb on - strand at 4022.203 kb on - strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.232 kb on + strand at 4022.233 kb on - strand at 4022.233 kb on - strand at 4022.233 kb on - strand at 4022.233 kb on - strand at 4022.340 kb on + strand, within Xcc-8004.4190.1 at 4022.433 kb on + strand, within Xcc-8004.4190.1 at 4022.434 kb on - strand, within Xcc-8004.4190.1 at 4022.434 kb on - strand, within Xcc-8004.4190.1 at 4022.475 kb on + strand, within Xcc-8004.4190.1 at 4022.476 kb on - strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.490 kb on + strand, within Xcc-8004.4190.1 at 4022.491 kb on - strand, within Xcc-8004.4190.1 at 4022.491 kb on - strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.502 kb on + strand, within Xcc-8004.4190.1 at 4022.503 kb on - strand, within Xcc-8004.4190.1 at 4022.503 kb on - strand, within Xcc-8004.4190.1 at 4022.503 kb on - strand, within Xcc-8004.4190.1 at 4022.503 kb on - strand, within Xcc-8004.4190.1 at 4022.503 kb on - strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.511 kb on + strand, within Xcc-8004.4190.1 at 4022.512 kb on - strand, within Xcc-8004.4190.1 at 4022.512 kb on - strand, within Xcc-8004.4190.1 at 4022.512 kb on - strand, within Xcc-8004.4190.1 at 4022.592 kb on + strand, within Xcc-8004.4190.1 at 4022.592 kb on + strand, within Xcc-8004.4190.1 at 4022.592 kb on + strand, within Xcc-8004.4190.1 at 4022.593 kb on - strand, within Xcc-8004.4190.1 at 4022.593 kb on - strand, within Xcc-8004.4190.1 at 4022.593 kb on - strand, within Xcc-8004.4190.1 at 4022.593 kb on - strand, within Xcc-8004.4190.1 at 4022.640 kb on + strand, within Xcc-8004.4190.1 at 4022.640 kb on + strand, within Xcc-8004.4190.1 at 4022.641 kb on - strand, within Xcc-8004.4190.1 at 4022.641 kb on - strand, within Xcc-8004.4190.1 at 4022.641 kb on - strand, within Xcc-8004.4190.1 at 4022.641 kb on - strand, within Xcc-8004.4190.1 at 4022.641 kb on - strand, within Xcc-8004.4190.1 at 4022.661 kb on + strand, within Xcc-8004.4190.1 at 4022.662 kb on - strand, within Xcc-8004.4190.1 at 4022.662 kb on - strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.802 kb on + strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.803 kb on - strand, within Xcc-8004.4190.1 at 4022.841 kb on + strand, within Xcc-8004.4190.1 at 4022.842 kb on - strand, within Xcc-8004.4190.1 at 4022.842 kb on - strand, within Xcc-8004.4190.1 at 4022.842 kb on - strand, within Xcc-8004.4190.1 at 4022.842 kb on - strand, within Xcc-8004.4190.1 at 4022.842 kb on - strand, within Xcc-8004.4190.1 at 4022.884 kb on - strand, within Xcc-8004.4190.1 at 4022.884 kb on - strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.910 kb on + strand, within Xcc-8004.4190.1 at 4022.911 kb on - strand, within Xcc-8004.4190.1 at 4022.911 kb on - strand, within Xcc-8004.4190.1 at 4022.911 kb on - strand, within Xcc-8004.4190.1 at 4022.911 kb on - strand, within Xcc-8004.4190.1 at 4022.911 kb on - strand, within Xcc-8004.4190.1 at 4022.940 kb on + strand, within Xcc-8004.4190.1 at 4022.941 kb on - strand, within Xcc-8004.4190.1 at 4022.950 kb on - strand, within Xcc-8004.4190.1 at 4022.950 kb on - strand, within Xcc-8004.4190.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 4,020,654 + Xcc-8004.4187.1 0.79 -0.9 4,020,654 + Xcc-8004.4187.1 0.79 -1.8 4,020,654 + Xcc-8004.4187.1 0.79 +0.3 4,020,654 + Xcc-8004.4187.1 0.79 -0.9 4,020,654 + Xcc-8004.4187.1 0.79 -0.2 4,020,654 + Xcc-8004.4187.1 0.79 +0.2 4,020,654 + Xcc-8004.4187.1 0.79 -0.6 4,020,654 + Xcc-8004.4187.1 0.79 +0.1 4,020,655 - Xcc-8004.4187.1 0.79 +0.5 4,020,655 - Xcc-8004.4187.1 0.79 +0.1 4,020,691 + Xcc-8004.4187.1 0.81 -1.4 4,020,692 - Xcc-8004.4187.1 0.82 +2.4 4,020,692 - Xcc-8004.4187.1 0.82 +1.9 4,020,801 + -1.6 4,020,802 - -1.2 4,020,802 - -1.3 4,020,802 - +0.8 4,020,946 - -0.5 4,021,068 + +0.4 4,021,068 + +2.3 4,021,068 + -2.1 4,021,068 + -2.0 4,021,068 + +0.2 4,021,068 + +0.4 4,021,068 + -0.6 4,021,069 - -0.6 4,021,069 - -2.1 4,021,069 - +0.8 4,021,069 - +2.4 4,021,069 - -0.3 4,021,071 + -1.8 4,021,071 + +1.0 4,021,071 + -3.3 4,021,072 - -0.4 4,021,072 - -1.1 4,021,224 + Xcc-8004.4188.1 0.30 -0.3 4,021,224 + Xcc-8004.4188.1 0.30 +0.6 4,021,224 + Xcc-8004.4188.1 0.30 +2.0 4,021,224 + Xcc-8004.4188.1 0.30 +0.4 4,021,225 - Xcc-8004.4188.1 0.30 +1.6 4,021,522 - Xcc-8004.4188.1 0.80 -2.9 4,021,522 - Xcc-8004.4188.1 0.80 +0.0 4,021,743 + Xcc-8004.4189.1 0.30 +0.6 4,021,743 + Xcc-8004.4189.1 0.30 -2.0 4,021,744 - Xcc-8004.4189.1 0.30 -1.0 4,022,158 + +1.4 4,022,160 + +0.9 4,022,160 + -2.1 4,022,160 + +0.9 4,022,160 + +0.1 4,022,160 + -0.2 4,022,160 + +1.3 4,022,160 + -0.6 4,022,160 + +1.2 4,022,160 + +0.4 4,022,160 + +0.8 4,022,160 + -1.3 4,022,160 + +0.7 4,022,160 + -1.4 4,022,160 + -0.6 4,022,160 + +0.3 4,022,161 - -2.2 4,022,161 - +0.7 4,022,161 - -2.3 4,022,161 - +0.0 4,022,161 - -1.2 4,022,161 - +0.6 4,022,161 - +0.1 4,022,161 - -0.6 4,022,190 + +1.6 4,022,190 + -1.6 4,022,190 + -2.1 4,022,190 + -0.3 4,022,191 - +1.6 4,022,191 - -1.2 4,022,191 - -2.1 4,022,191 - +0.5 4,022,203 - -0.9 4,022,232 + -0.8 4,022,232 + -1.3 4,022,232 + +1.2 4,022,232 + -0.9 4,022,232 + +0.1 4,022,232 + +0.9 4,022,232 + +0.5 4,022,232 + -1.0 4,022,232 + +0.7 4,022,232 + +0.7 4,022,232 + +0.1 4,022,232 + +1.0 4,022,232 + +1.1 4,022,232 + -3.4 4,022,232 + -1.8 4,022,233 - -3.0 4,022,233 - -1.4 4,022,233 - -1.3 4,022,233 - -0.7 4,022,340 + Xcc-8004.4190.1 0.18 -1.7 4,022,433 + Xcc-8004.4190.1 0.26 +0.2 4,022,434 - Xcc-8004.4190.1 0.26 +1.0 4,022,434 - Xcc-8004.4190.1 0.26 +1.7 4,022,475 + Xcc-8004.4190.1 0.29 +0.7 4,022,476 - Xcc-8004.4190.1 0.29 -0.7 4,022,490 + Xcc-8004.4190.1 0.30 -1.3 4,022,490 + Xcc-8004.4190.1 0.30 -0.3 4,022,490 + Xcc-8004.4190.1 0.30 +1.0 4,022,490 + Xcc-8004.4190.1 0.30 +0.6 4,022,490 + Xcc-8004.4190.1 0.30 -0.7 4,022,490 + Xcc-8004.4190.1 0.30 -0.2 4,022,491 - Xcc-8004.4190.1 0.30 -1.0 4,022,491 - Xcc-8004.4190.1 0.30 +0.0 4,022,502 + Xcc-8004.4190.1 0.31 +0.6 4,022,502 + Xcc-8004.4190.1 0.31 +0.8 4,022,502 + Xcc-8004.4190.1 0.31 +0.3 4,022,502 + Xcc-8004.4190.1 0.31 +1.2 4,022,502 + Xcc-8004.4190.1 0.31 -1.7 4,022,502 + Xcc-8004.4190.1 0.31 +0.4 4,022,503 - Xcc-8004.4190.1 0.31 +0.4 4,022,503 - Xcc-8004.4190.1 0.31 +0.4 4,022,503 - Xcc-8004.4190.1 0.31 -0.4 4,022,503 - Xcc-8004.4190.1 0.31 +1.4 4,022,503 - Xcc-8004.4190.1 0.31 +2.6 4,022,511 + Xcc-8004.4190.1 0.32 +2.6 4,022,511 + Xcc-8004.4190.1 0.32 -0.6 4,022,511 + Xcc-8004.4190.1 0.32 -3.2 4,022,511 + Xcc-8004.4190.1 0.32 -0.1 4,022,511 + Xcc-8004.4190.1 0.32 -0.2 4,022,511 + Xcc-8004.4190.1 0.32 +0.2 4,022,511 + Xcc-8004.4190.1 0.32 +1.1 4,022,512 - Xcc-8004.4190.1 0.32 +1.1 4,022,512 - Xcc-8004.4190.1 0.32 +0.2 4,022,512 - Xcc-8004.4190.1 0.32 -0.8 4,022,592 + Xcc-8004.4190.1 0.39 +0.0 4,022,592 + Xcc-8004.4190.1 0.39 +1.7 4,022,592 + Xcc-8004.4190.1 0.39 +0.0 4,022,593 - Xcc-8004.4190.1 0.39 -0.0 4,022,593 - Xcc-8004.4190.1 0.39 +0.4 4,022,593 - Xcc-8004.4190.1 0.39 -0.8 4,022,593 - Xcc-8004.4190.1 0.39 +0.5 4,022,640 + Xcc-8004.4190.1 0.43 +1.8 4,022,640 + Xcc-8004.4190.1 0.43 -0.2 4,022,641 - Xcc-8004.4190.1 0.43 +1.0 4,022,641 - Xcc-8004.4190.1 0.43 -0.0 4,022,641 - Xcc-8004.4190.1 0.43 +0.8 4,022,641 - Xcc-8004.4190.1 0.43 +1.0 4,022,641 - Xcc-8004.4190.1 0.43 -0.6 4,022,661 + Xcc-8004.4190.1 0.44 +0.9 4,022,662 - Xcc-8004.4190.1 0.44 -1.6 4,022,662 - Xcc-8004.4190.1 0.44 +1.3 4,022,802 + Xcc-8004.4190.1 0.56 -2.0 4,022,802 + Xcc-8004.4190.1 0.56 +1.4 4,022,802 + Xcc-8004.4190.1 0.56 +1.5 4,022,802 + Xcc-8004.4190.1 0.56 +1.1 4,022,802 + Xcc-8004.4190.1 0.56 +0.1 4,022,802 + Xcc-8004.4190.1 0.56 +0.2 4,022,802 + Xcc-8004.4190.1 0.56 -0.2 4,022,802 + Xcc-8004.4190.1 0.56 -1.6 4,022,802 + Xcc-8004.4190.1 0.56 +0.4 4,022,803 - Xcc-8004.4190.1 0.56 +0.5 4,022,803 - Xcc-8004.4190.1 0.56 -1.4 4,022,803 - Xcc-8004.4190.1 0.56 +0.9 4,022,803 - Xcc-8004.4190.1 0.56 +0.2 4,022,803 - Xcc-8004.4190.1 0.56 +0.8 4,022,803 - Xcc-8004.4190.1 0.56 -0.6 4,022,803 - Xcc-8004.4190.1 0.56 -0.1 4,022,841 + Xcc-8004.4190.1 0.59 -1.2 4,022,842 - Xcc-8004.4190.1 0.59 +0.8 4,022,842 - Xcc-8004.4190.1 0.59 -0.0 4,022,842 - Xcc-8004.4190.1 0.59 -0.6 4,022,842 - Xcc-8004.4190.1 0.59 -1.6 4,022,842 - Xcc-8004.4190.1 0.59 +2.9 4,022,884 - Xcc-8004.4190.1 0.63 +2.2 4,022,884 - Xcc-8004.4190.1 0.63 -0.6 4,022,910 + Xcc-8004.4190.1 0.65 +0.0 4,022,910 + Xcc-8004.4190.1 0.65 -0.7 4,022,910 + Xcc-8004.4190.1 0.65 -1.8 4,022,910 + Xcc-8004.4190.1 0.65 -0.5 4,022,910 + Xcc-8004.4190.1 0.65 +1.0 4,022,910 + Xcc-8004.4190.1 0.65 -0.1 4,022,911 - Xcc-8004.4190.1 0.65 -0.6 4,022,911 - Xcc-8004.4190.1 0.65 -1.4 4,022,911 - Xcc-8004.4190.1 0.65 +0.6 4,022,911 - Xcc-8004.4190.1 0.65 -1.0 4,022,911 - Xcc-8004.4190.1 0.65 +0.2 4,022,940 + Xcc-8004.4190.1 0.67 -0.7 4,022,941 - Xcc-8004.4190.1 0.67 +0.3 4,022,950 - Xcc-8004.4190.1 0.68 +1.0 4,022,950 - Xcc-8004.4190.1 0.68 -0.9
Or see this region's nucleotide sequence