Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.393.1 and Xcc-8004.394.1 are separated by 356 nucleotides Xcc-8004.394.1 and Xcc-8004.395.1 are separated by 200 nucleotides Xcc-8004.395.1 and Xcc-8004.396.1 are separated by 90 nucleotides
Xcc-8004.393.1: Xcc-8004.393.1 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 378,588 to 379,463
Xcc-8004.393.1
Xcc-8004.394.1: Xcc-8004.394.1 - FIG01211006: hypothetical protein, at 379,820 to 380,212
Xcc-8004.394.1
Xcc-8004.395.1: Xcc-8004.395.1 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 380,413 to 381,282
Xcc-8004.395.1
Xcc-8004.396.1: Xcc-8004.396.1 - hypothetical protein, at 381,373 to 382,290
Xcc-8004.396.1
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.550 kb on + strand at 379.551 kb on - strand at 379.551 kb on - strand at 379.715 kb on + strand at 379.716 kb on - strand at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.936 kb on - strand, within Xcc-8004.394.1 at 379.945 kb on + strand, within Xcc-8004.394.1 at 379.946 kb on - strand, within Xcc-8004.394.1 at 380.371 kb on + strand at 380.443 kb on + strand at 380.444 kb on - strand at 380.486 kb on - strand at 380.524 kb on - strand, within Xcc-8004.395.1 at 380.755 kb on - strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.942 kb on - strand, within Xcc-8004.395.1 at 381.041 kb on - strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.092 kb on - strand, within Xcc-8004.395.1 at 381.264 kb on + strand at 381.265 kb on - strand at 381.385 kb on + strand at 381.386 kb on - strand at 381.413 kb on + strand at 381.414 kb on - strand at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.763 kb on + strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 382.172 kb on + strand, within Xcc-8004.396.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 379,461 + -1.1 379,461 + -2.3 379,461 + -0.9 379,461 + +1.0 379,550 + -2.1 379,551 - -0.3 379,551 - +0.8 379,715 + +1.6 379,716 - -0.1 379,935 + Xcc-8004.394.1 0.29 +0.9 379,935 + Xcc-8004.394.1 0.29 -1.6 379,935 + Xcc-8004.394.1 0.29 +0.0 379,936 - Xcc-8004.394.1 0.30 -3.2 379,945 + Xcc-8004.394.1 0.32 +0.8 379,946 - Xcc-8004.394.1 0.32 +0.7 380,371 + -1.0 380,443 + +0.9 380,444 - +0.2 380,486 - -2.1 380,524 - Xcc-8004.395.1 0.13 -1.1 380,755 - Xcc-8004.395.1 0.39 -1.7 380,927 + Xcc-8004.395.1 0.59 -1.7 380,927 + Xcc-8004.395.1 0.59 -1.4 380,927 + Xcc-8004.395.1 0.59 -3.6 380,942 - Xcc-8004.395.1 0.61 -1.9 381,041 - Xcc-8004.395.1 0.72 -1.4 381,091 + Xcc-8004.395.1 0.78 -1.0 381,091 + Xcc-8004.395.1 0.78 -2.8 381,091 + Xcc-8004.395.1 0.78 -1.7 381,091 + Xcc-8004.395.1 0.78 +0.2 381,092 - Xcc-8004.395.1 0.78 -1.4 381,264 + +0.3 381,265 - -2.1 381,385 + -0.3 381,386 - +0.1 381,413 + -0.8 381,414 - +0.4 381,563 + Xcc-8004.396.1 0.21 +0.2 381,563 + Xcc-8004.396.1 0.21 -0.7 381,564 - Xcc-8004.396.1 0.21 +2.3 381,564 - Xcc-8004.396.1 0.21 -1.8 381,564 - Xcc-8004.396.1 0.21 +0.2 381,763 + Xcc-8004.396.1 0.42 +0.5 381,764 - Xcc-8004.396.1 0.43 +0.2 381,764 - Xcc-8004.396.1 0.43 -0.9 382,172 + Xcc-8004.396.1 0.87 +0.5
Or see this region's nucleotide sequence